Wall clock time and date at job start Tue Mar 31 2020 06:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.46585 * 2 1 4 4 C 1.50694 * 109.47174 * 239.99970 * 2 1 3 5 5 O 1.21286 * 120.00076 * 270.73776 * 4 2 1 6 6 N 1.34776 * 120.00351 * 90.73816 * 4 2 1 7 7 C 1.46507 * 119.99599 * 354.78324 * 6 4 2 8 8 C 1.46500 * 120.00505 * 174.78822 * 6 4 2 9 9 C 1.50695 * 109.47275 * 89.99776 * 8 6 4 10 10 H 1.07999 * 119.99671 * 0.02562 * 9 8 6 11 11 C 1.37877 * 119.99851 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99810 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 119.99989 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47112 * 90.00068 * 13 11 9 15 15 H 1.48504 * 109.47253 * 209.99549 * 13 11 9 16 16 H 1.48501 * 109.47473 * 329.99589 * 13 11 9 17 17 N 1.46893 * 109.47404 * 119.99481 * 2 1 3 18 18 C 1.46854 * 111.00303 * 299.28261 * 17 2 1 19 19 C 1.53034 * 109.52409 * 174.16137 * 18 17 2 20 20 H 1.09005 * 109.50250 * 299.23009 * 19 18 17 21 21 C 1.52996 * 109.50184 * 179.11876 * 19 18 17 22 22 C 1.53112 * 109.28207 * 59.17355 * 19 18 17 23 23 C 1.53123 * 109.16334 * 302.34608 * 22 19 18 24 24 H 1.08998 * 109.49818 * 297.71440 * 23 22 19 25 25 C 1.52998 * 109.50565 * 177.63496 * 23 22 19 26 26 C 1.46842 * 111.00266 * 175.06820 * 17 2 1 27 27 H 1.09004 * 109.47371 * 305.43384 * 1 2 3 28 28 H 1.08998 * 109.47048 * 65.43875 * 1 2 3 29 29 H 1.08999 * 109.47050 * 185.44091 * 1 2 3 30 30 H 1.09000 * 109.46807 * 94.65559 * 7 6 4 31 31 H 1.08999 * 109.47431 * 214.64806 * 7 6 4 32 32 H 1.08993 * 109.47482 * 334.65604 * 7 6 4 33 33 H 1.08999 * 109.46986 * 210.00067 * 8 6 4 34 34 H 1.09006 * 109.46617 * 329.99704 * 8 6 4 35 35 H 0.97004 * 119.99814 * 180.02562 * 12 11 9 36 36 H 1.08991 * 109.46392 * 54.13551 * 18 17 2 37 37 H 1.09008 * 109.44598 * 294.16838 * 18 17 2 38 38 H 1.09003 * 109.47055 * 300.18822 * 21 19 18 39 39 H 1.08995 * 109.47577 * 60.18927 * 21 19 18 40 40 H 1.09004 * 109.47149 * 180.19679 * 21 19 18 41 41 H 1.09000 * 109.52359 * 182.44398 * 22 19 18 42 42 H 1.08997 * 109.57813 * 62.28403 * 22 19 18 43 43 H 1.08996 * 109.47005 * 60.07621 * 25 23 22 44 44 H 1.08997 * 109.47024 * 180.02562 * 25 23 22 45 45 H 1.09003 * 109.47148 * 300.07782 * 25 23 22 46 46 H 1.08994 * 109.46770 * 65.82349 * 26 17 2 47 47 H 1.09005 * 109.46343 * 305.85485 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.2217 -1.9081 -1.2043 6 7 2.2712 -0.0149 -2.3599 7 6 1.9351 1.4095 -2.4278 8 6 2.8667 -0.6831 -3.5196 9 6 1.7735 -1.2410 -4.3941 10 1 0.7386 -1.1105 -4.1141 11 6 2.0945 -1.9181 -5.5514 12 7 1.1405 -2.4046 -6.3148 13 14 3.8845 -2.1444 -6.0351 14 1 4.4000 -3.4074 -5.4482 15 1 3.9935 -2.2058 -7.5149 16 1 4.6832 -1.0002 -5.5270 17 7 2.0197 -0.6923 1.1994 18 6 1.5630 -0.0165 2.4206 19 6 1.9670 -0.8426 3.6439 20 1 1.4986 -1.8254 3.5901 21 6 1.5102 -0.1272 4.9168 22 6 3.4896 -1.0024 3.6656 23 6 3.9441 -1.6648 2.3620 24 1 3.5068 -2.6605 2.2881 25 6 5.4701 -1.7748 2.3499 26 6 3.4828 -0.8148 1.1759 27 1 -0.3634 0.5958 0.8373 28 1 -0.3633 0.4272 -0.9347 29 1 -0.3633 -1.0230 0.0974 30 1 2.8152 2.0026 -2.1794 31 1 1.6032 1.6568 -3.4362 32 1 1.1371 1.6288 -1.7186 33 1 3.4568 0.0348 -4.0892 34 1 3.5104 -1.4947 -3.1803 35 1 1.3664 -2.8812 -7.1289 36 1 0.4783 0.0871 2.3943 37 1 2.0208 0.9709 2.4818 38 1 1.9778 0.8561 4.9687 39 1 0.4263 -0.0136 4.9008 40 1 1.8013 -0.7142 5.7879 41 1 3.7783 -1.6266 4.5112 42 1 3.9584 -0.0229 3.7591 43 1 5.7975 -2.3788 3.1961 44 1 5.7930 -2.2460 1.4216 45 1 5.9068 -0.7788 2.4238 46 1 3.9314 0.1762 1.2431 47 1 3.7925 -1.2912 0.2456 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248402704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:20 Heat of formation + Delta-G solvation = -40.345763 kcal Electronic energy + Delta-G solvation = -23848.812136 eV Core-core repulsion = 20645.228498 eV Total energy + Delta-G solvation = -3203.583639 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.08983 -38.44729 -35.05392 -34.71786 -33.51039 -32.50240 -30.50058 -28.40197 -26.86510 -26.66078 -25.91194 -24.53024 -23.09319 -21.19121 -20.62865 -19.72178 -18.23049 -16.92632 -16.66591 -16.12314 -15.36914 -15.06680 -14.67145 -14.51875 -14.32924 -13.99278 -13.60081 -13.18222 -12.98361 -12.86040 -12.69239 -12.54188 -12.37638 -12.20985 -12.10790 -11.99427 -11.65434 -11.53640 -11.48067 -11.45123 -11.22024 -10.87201 -10.83840 -10.58895 -10.50832 -10.23464 -10.20795 -10.10258 -9.50813 -8.84558 -8.56611 -8.13704 -7.66123 -6.06179 -4.04471 3.30115 3.33085 3.36081 3.37980 3.62241 4.11334 4.41455 4.60515 4.75094 4.76924 4.94284 5.05165 5.24220 5.27573 5.29795 5.34249 5.36475 5.41785 5.48823 5.51906 5.54900 5.57728 5.68949 5.71640 5.78699 5.80612 5.83082 5.85330 5.93521 5.97877 6.02895 6.14548 6.15998 6.19394 6.31327 6.39744 6.47189 6.69703 6.92159 7.13339 7.21923 7.38079 7.63543 8.28319 8.49924 8.96781 9.04923 9.54231 11.07373 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023572 B = 0.004494 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.581819 B = 6229.518045 C = 6876.455253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.067 3.933 3 H 0.053 0.947 4 C 0.511 3.489 5 O -0.517 6.517 6 N -0.601 5.601 7 C 0.081 3.919 8 C 0.218 3.782 9 C -0.526 4.526 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.876 3.124 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.267 1.267 17 N -0.516 5.516 18 C 0.060 3.940 19 C -0.090 4.090 20 H 0.080 0.920 21 C -0.144 4.144 22 C -0.109 4.109 23 C -0.087 4.087 24 H 0.081 0.919 25 C -0.145 4.145 26 C 0.057 3.943 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.078 0.922 37 H 0.029 0.971 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.025 0.975 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 8.806 20.075 22.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.045 4.045 3 H 0.071 0.929 4 C 0.296 3.704 5 O -0.392 6.392 6 N -0.334 5.334 7 C -0.063 4.063 8 C 0.097 3.903 9 C -0.565 4.565 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.240 5.240 18 C -0.068 4.068 19 C -0.109 4.109 20 H 0.098 0.902 21 C -0.202 4.202 22 C -0.147 4.147 23 C -0.106 4.106 24 H 0.099 0.901 25 C -0.203 4.203 26 C -0.070 4.070 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.043 0.957 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.490 7.592 19.877 21.562 hybrid contribution 1.132 0.768 -0.525 1.465 sum 4.622 8.361 19.353 21.582 Atomic orbital electron populations 1.21778 0.92253 1.03733 1.01966 1.21641 0.97339 0.95564 0.89919 0.92885 1.20108 0.78733 0.87702 0.83825 1.90680 1.50699 1.14028 1.83777 1.47873 1.62004 1.09550 1.13987 1.21697 0.99255 0.82053 1.03260 1.19629 0.94573 0.92954 0.83122 1.21324 0.94222 1.35369 1.05540 0.90752 1.24860 0.97212 0.94855 0.96112 1.69900 1.32130 1.37283 1.14334 0.86858 0.85738 0.79378 0.77744 1.19906 1.21078 1.19142 1.61616 1.11088 1.51048 1.00296 1.22199 1.00553 0.94765 0.89265 1.21157 0.96005 1.00115 0.93590 0.90158 1.21783 1.01113 1.00256 0.97069 1.21711 0.95156 1.00395 0.97396 1.21123 0.95315 1.00285 0.93890 0.90075 1.21777 0.95164 1.01415 1.01937 1.22227 0.86681 0.97987 1.00125 0.92055 0.91433 0.90727 0.93872 0.90575 0.92016 0.95326 0.94815 0.92603 0.90376 0.95304 0.92948 0.92594 0.92567 0.92015 0.92494 0.92636 0.92338 0.93055 0.95697 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.56 37.16 0.32 -1.64 16 2 C 0.07 1.05 1.62 -68.87 -0.11 0.94 16 3 H 0.05 0.74 6.75 -51.92 -0.35 0.39 16 4 C 0.51 10.64 5.61 -10.99 -0.06 10.58 16 5 O -0.52 -13.05 15.07 5.55 0.08 -12.97 16 6 N -0.60 -12.59 2.86 -182.95 -0.52 -13.11 16 7 C 0.08 1.28 9.88 59.85 0.59 1.87 16 8 C 0.22 5.40 4.21 -5.20 -0.02 5.38 16 9 C -0.53 -15.32 9.94 -34.44 -0.34 -15.67 16 10 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 11 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 12 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 13 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 14 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 17 N -0.52 -7.72 4.29 -228.08 -0.98 -8.70 16 18 C 0.06 0.69 4.51 -3.83 -0.02 0.68 16 19 C -0.09 -0.92 2.88 -90.55 -0.26 -1.18 16 20 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 21 C -0.14 -1.15 9.20 37.16 0.34 -0.81 16 22 C -0.11 -1.11 4.57 -26.61 -0.12 -1.23 16 23 C -0.09 -1.08 2.88 -90.54 -0.26 -1.34 16 24 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 25 C -0.15 -1.57 9.20 37.16 0.34 -1.23 16 26 C 0.06 0.85 4.38 -3.84 -0.02 0.83 16 27 H 0.06 0.67 6.59 -51.93 -0.34 0.33 16 28 H 0.07 0.95 7.23 -51.93 -0.38 0.58 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.23 8.11 -51.93 -0.42 0.81 16 32 H 0.06 0.81 5.40 -51.93 -0.28 0.53 16 33 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 34 H 0.03 0.89 6.93 -51.93 -0.36 0.53 16 35 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 36 H 0.08 0.84 6.15 -51.93 -0.32 0.53 16 37 H 0.03 0.32 8.14 -51.92 -0.42 -0.10 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.09 1.58 5.96 -51.93 -0.31 1.27 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -33.67 357.91 -8.28 -41.95 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -8.64 Total: -1.66 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 0.28 Total: -0.81 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.73 Total: -49.03 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.67 -8.28 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248402704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.600 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds