Wall clock time and date at job start Tue Mar 31 2020 06:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46649 * 2 1 4 4 C 1.50700 * 109.47447 * 240.00032 * 2 1 3 5 5 O 1.21277 * 119.99558 * 270.75162 * 4 2 1 6 6 N 1.34775 * 119.99963 * 90.74812 * 4 2 1 7 7 C 1.46493 * 120.00246 * 354.78793 * 6 4 2 8 8 C 1.46501 * 119.99833 * 174.78981 * 6 4 2 9 9 C 1.50703 * 109.47271 * 89.99880 * 8 6 4 10 10 H 1.07999 * 120.00028 * 0.02562 * 9 8 6 11 11 C 1.37874 * 119.99902 * 180.02562 * 9 8 6 12 12 N 1.31517 * 120.00290 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99822 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47223 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47065 * 120.00120 * 13 11 9 16 16 H 1.48499 * 109.47410 * 239.99675 * 13 11 9 17 17 N 1.46896 * 109.47380 * 119.99585 * 2 1 3 18 18 C 1.46854 * 111.00023 * 299.28037 * 17 2 1 19 19 C 1.53037 * 109.52228 * 174.15756 * 18 17 2 20 20 H 1.08999 * 109.50489 * 299.23764 * 19 18 17 21 21 C 1.53002 * 109.50289 * 179.12258 * 19 18 17 22 22 C 1.53118 * 109.27788 * 59.17789 * 19 18 17 23 23 C 1.53117 * 109.16394 * 302.34556 * 22 19 18 24 24 H 1.08992 * 109.50335 * 177.59446 * 23 22 19 25 25 C 1.53003 * 109.53200 * 297.69588 * 23 22 19 26 26 C 1.46840 * 111.00281 * 175.06757 * 17 2 1 27 27 H 1.08996 * 109.47243 * 305.44091 * 1 2 3 28 28 H 1.08997 * 109.46950 * 65.44218 * 1 2 3 29 29 H 1.08996 * 109.47102 * 185.43723 * 1 2 3 30 30 H 1.09003 * 109.47219 * 94.65011 * 7 6 4 31 31 H 1.09003 * 109.47648 * 214.64769 * 7 6 4 32 32 H 1.09000 * 109.47286 * 334.65370 * 7 6 4 33 33 H 1.09004 * 109.47080 * 210.00269 * 8 6 4 34 34 H 1.09004 * 109.47233 * 329.99904 * 8 6 4 35 35 H 0.96994 * 120.00317 * 180.02562 * 12 11 9 36 36 H 1.09001 * 109.46131 * 54.14534 * 18 17 2 37 37 H 1.08994 * 109.45346 * 294.16773 * 18 17 2 38 38 H 1.09000 * 109.47296 * 59.99875 * 21 19 18 39 39 H 1.08996 * 109.47376 * 180.02562 * 21 19 18 40 40 H 1.09004 * 109.46637 * 299.99802 * 21 19 18 41 41 H 1.09000 * 109.52015 * 62.25335 * 22 19 18 42 42 H 1.09002 * 109.52142 * 182.43937 * 22 19 18 43 43 H 1.08997 * 109.46836 * 179.82233 * 25 23 22 44 44 H 1.08999 * 109.47008 * 299.82027 * 25 23 22 45 45 H 1.08997 * 109.47404 * 59.82040 * 25 23 22 46 46 H 1.09001 * 109.46468 * 305.85714 * 26 17 2 47 47 H 1.08998 * 109.46387 * 65.82621 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2216 -1.9080 -1.2043 6 7 2.2715 -0.0148 -2.3598 7 6 1.9357 1.4096 -2.4277 8 6 2.8670 -0.6831 -3.5195 9 6 1.7738 -1.2408 -4.3941 10 1 0.7389 -1.1101 -4.1144 11 6 2.0949 -1.9179 -5.5515 12 7 3.3551 -2.0766 -5.8925 13 14 0.7398 -2.6085 -6.6359 14 1 -0.5822 -2.2960 -6.0359 15 1 0.8267 -1.9973 -7.9865 16 1 0.8974 -4.0809 -6.7480 17 7 2.0197 -0.6924 1.1994 18 6 1.5630 -0.0165 2.4206 19 6 1.9669 -0.8426 3.6439 20 1 1.4986 -1.8254 3.5901 21 6 1.5101 -0.1273 4.9169 22 6 3.4896 -1.0025 3.6656 23 6 3.9441 -1.6648 2.3621 24 1 5.0312 -1.7425 2.3532 25 6 3.3311 -3.0628 2.2578 26 6 3.4828 -0.8149 1.1759 27 1 -0.3633 0.5959 0.8372 28 1 -0.3633 0.4271 -0.9347 29 1 -0.3633 -1.0230 0.0974 30 1 2.8159 2.0026 -2.1791 31 1 1.6039 1.6571 -3.4361 32 1 1.1377 1.6290 -1.7185 33 1 3.4574 0.0348 -4.0890 34 1 3.5106 -1.4948 -3.1803 35 1 3.5809 -2.5526 -6.7068 36 1 0.4782 0.0870 2.3943 37 1 2.0207 0.9708 2.4819 38 1 0.4265 -0.0107 4.8992 39 1 1.7984 -0.7158 5.7878 40 1 1.9804 0.8546 4.9704 41 1 3.9574 -0.0224 3.7586 42 1 3.7783 -1.6266 4.5113 43 1 3.6528 -3.5320 1.3281 44 1 3.6599 -3.6676 3.1028 45 1 2.2440 -2.9846 2.2681 46 1 3.7925 -1.2912 0.2457 47 1 3.9314 0.1762 1.2431 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248402705.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:22 Heat of formation + Delta-G solvation = -41.486244 kcal Electronic energy + Delta-G solvation = -23997.535049 eV Core-core repulsion = 20793.901956 eV Total energy + Delta-G solvation = -3203.633094 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.09622 -38.42313 -34.94391 -34.60443 -33.13309 -32.55279 -30.26715 -27.80988 -26.83368 -26.57176 -25.79675 -24.56340 -23.26731 -21.45489 -21.21072 -18.69198 -18.19344 -16.63766 -16.46746 -16.10886 -15.08609 -14.91942 -14.69747 -14.27611 -14.15302 -13.98488 -13.91569 -13.46183 -13.04249 -12.79442 -12.55891 -12.23521 -12.16956 -11.98690 -11.88790 -11.75353 -11.52908 -11.48466 -11.28509 -11.20904 -11.10328 -10.82454 -10.82099 -10.57215 -10.47152 -10.18685 -10.12572 -10.00192 -9.56523 -8.71985 -8.41310 -8.05467 -7.58482 -6.01685 -4.05889 3.31636 3.38828 3.41663 3.45133 3.73662 4.21613 4.47482 4.67292 4.79168 4.83526 5.04937 5.15738 5.29668 5.30850 5.33849 5.38803 5.42801 5.46064 5.53506 5.59143 5.64087 5.70549 5.75479 5.81056 5.86958 5.90943 5.94206 6.01039 6.01698 6.07865 6.09674 6.20312 6.30428 6.33706 6.39364 6.48967 6.75220 7.02173 7.21652 7.28413 7.45788 7.58959 7.95231 8.26563 8.46839 8.94552 9.17438 9.59283 11.06443 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026581 B = 0.004248 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.140847 B = 6589.573090 C = 6899.869123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.065 3.935 3 H 0.052 0.948 4 C 0.509 3.491 5 O -0.518 6.518 6 N -0.606 5.606 7 C 0.082 3.918 8 C 0.248 3.752 9 C -0.522 4.522 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.897 3.103 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.283 1.283 17 N -0.511 5.511 18 C 0.060 3.940 19 C -0.091 4.091 20 H 0.083 0.917 21 C -0.145 4.145 22 C -0.110 4.110 23 C -0.085 4.085 24 H 0.068 0.932 25 C -0.136 4.136 26 C 0.056 3.944 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.031 0.969 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.028 0.972 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.039 0.961 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.216 7.528 18.764 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.047 4.047 3 H 0.070 0.930 4 C 0.294 3.706 5 O -0.393 6.393 6 N -0.339 5.339 7 C -0.062 4.062 8 C 0.128 3.872 9 C -0.561 4.561 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 N -0.236 5.236 18 C -0.068 4.068 19 C -0.109 4.109 20 H 0.101 0.899 21 C -0.203 4.203 22 C -0.148 4.148 23 C -0.104 4.104 24 H 0.087 0.913 25 C -0.193 4.193 26 C -0.072 4.072 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.181 6.334 18.598 19.767 hybrid contribution -0.315 0.621 -0.804 1.064 sum -2.496 6.955 17.793 19.267 Atomic orbital electron populations 1.21762 0.92523 1.03536 1.01792 1.21667 0.97135 0.95637 0.90245 0.93031 1.20065 0.78956 0.87753 0.83818 1.90673 1.50823 1.14027 1.83742 1.48187 1.61769 1.09355 1.14614 1.21660 0.99098 0.82635 1.02829 1.19252 0.93777 0.92909 0.81226 1.21467 0.93277 1.35298 1.06046 0.92427 1.24936 0.95597 0.95922 0.97710 1.69940 1.16454 1.42287 1.24861 0.86452 0.82083 0.78914 0.80026 1.19806 1.21030 1.20876 1.61618 1.11059 1.50756 1.00162 1.22198 1.00434 0.94782 0.89409 1.21196 0.96076 1.00160 0.93494 0.89885 1.21793 1.01031 1.00263 0.97183 1.21687 0.95384 1.00168 0.97520 1.21112 0.99262 0.96232 0.93776 0.91334 1.21705 1.02329 0.94550 1.00707 1.22214 0.86856 0.97832 1.00278 0.92169 0.91628 0.90854 0.94000 0.90862 0.92364 0.95132 0.94070 0.92827 0.90504 0.95380 0.92677 0.92615 0.92997 0.92610 0.92036 0.92495 0.94145 0.91187 0.89298 0.95797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.56 37.16 0.32 -1.60 16 2 C 0.06 1.03 1.62 -68.87 -0.11 0.91 16 3 H 0.05 0.74 6.75 -51.93 -0.35 0.39 16 4 C 0.51 10.72 5.61 -10.99 -0.06 10.66 16 5 O -0.52 -13.15 15.07 5.56 0.08 -13.06 16 6 N -0.61 -13.03 2.86 -182.95 -0.52 -13.55 16 7 C 0.08 1.33 9.88 59.84 0.59 1.92 16 8 C 0.25 6.55 5.14 -5.19 -0.03 6.52 16 9 C -0.52 -14.99 9.39 -34.44 -0.32 -15.31 16 10 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 13 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 14 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 17 N -0.51 -7.62 3.57 -228.08 -0.81 -8.44 16 18 C 0.06 0.69 4.51 -3.83 -0.02 0.68 16 19 C -0.09 -0.94 2.53 -90.54 -0.23 -1.17 16 20 H 0.08 0.95 6.58 -51.93 -0.34 0.61 16 21 C -0.14 -1.18 9.20 37.16 0.34 -0.84 16 22 C -0.11 -1.16 4.79 -26.61 -0.13 -1.29 16 23 C -0.09 -1.09 3.21 -90.54 -0.29 -1.38 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 C -0.14 -1.87 8.75 37.16 0.33 -1.55 16 26 C 0.06 0.85 4.54 -3.84 -0.02 0.83 16 27 H 0.06 0.65 6.59 -51.93 -0.34 0.31 16 28 H 0.06 0.90 7.23 -51.93 -0.38 0.53 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 32 H 0.06 0.78 5.40 -51.93 -0.28 0.50 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.22 7.50 -51.93 -0.39 0.83 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.08 0.83 6.15 -51.93 -0.32 0.51 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 1.04 6.01 -51.93 -0.31 0.72 16 46 H 0.09 1.68 5.96 -51.93 -0.31 1.37 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 357.01 15.07 5.38 5.38 Total: -1.00 -32.35 357.01 -8.36 -40.71 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -8.48 Total: -2.04 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 0.27 Total: 0.03 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.60 Total: -48.14 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.06 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.35 -8.36 -40.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248402705.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.772 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds