Wall clock time and date at job start Tue Mar 31 2020 06:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47204 * 2 1 4 4 C 1.53003 * 109.47161 * 240.00105 * 2 1 3 5 5 C 1.52998 * 109.47161 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47304 * 60.00187 * 5 4 2 7 7 H 1.09004 * 109.47422 * 59.99655 * 6 5 4 8 8 N 1.46490 * 109.47255 * 179.97438 * 6 5 4 9 9 C 1.34776 * 120.00131 * 274.99637 * 8 6 5 10 10 O 1.21591 * 120.00195 * 0.02562 * 9 8 6 11 11 N 1.34777 * 120.00267 * 180.02562 * 9 8 6 12 12 C 1.46500 * 120.00376 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47299 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46886 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46912 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99751 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00001 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99923 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00006 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47093 * 90.00088 * 19 17 15 21 21 H 1.48500 * 109.47049 * 210.00797 * 19 17 15 22 22 H 1.48504 * 109.47189 * 330.00185 * 19 17 15 23 23 C 1.53003 * 109.47123 * 300.00278 * 6 5 4 24 24 C 1.52998 * 109.47258 * 59.99693 * 23 6 5 25 25 H 1.08995 * 109.47204 * 60.00488 * 24 23 6 26 26 C 1.53003 * 109.47161 * 180.02562 * 24 23 6 27 27 H 1.09008 * 109.47278 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47199 * 299.99585 * 1 2 3 29 29 H 1.08995 * 109.47576 * 59.99912 * 1 2 3 30 30 H 1.09002 * 109.46748 * 59.99957 * 4 2 1 31 31 H 1.09008 * 109.47174 * 300.00246 * 4 2 1 32 32 H 1.08995 * 109.47204 * 299.99895 * 5 4 2 33 33 H 1.09002 * 109.47063 * 179.97438 * 5 4 2 34 34 H 0.97004 * 120.00364 * 95.00049 * 8 6 5 35 35 H 0.97003 * 119.99640 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.46596 * 59.99898 * 12 11 9 37 37 H 1.09002 * 109.47129 * 300.00253 * 12 11 9 38 38 H 1.09001 * 109.46652 * 60.00269 * 13 12 11 39 39 H 1.08992 * 109.47514 * 300.00358 * 13 12 11 40 40 H 1.09002 * 109.47398 * 300.00496 * 14 13 12 41 41 H 1.09001 * 109.47194 * 60.00677 * 14 13 12 42 42 H 0.97000 * 119.99684 * 180.02562 * 18 17 15 43 43 H 1.08993 * 109.47568 * 180.02562 * 23 6 5 44 44 H 1.09004 * 109.46463 * 299.99964 * 23 6 5 45 45 H 1.09000 * 109.47026 * 179.97438 * 26 24 23 46 46 H 1.09002 * 109.46748 * 300.00043 * 26 24 23 47 47 H 1.09004 * 109.46824 * 60.00109 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0795 -1.4435 0.0002 7 1 3.7158 -2.4710 0.0000 8 7 5.5444 -1.4445 0.0002 9 6 6.2176 -2.4011 -0.6692 10 8 5.6091 -3.2630 -1.2736 11 7 7.5654 -2.4024 -0.6688 12 6 8.2972 -3.4419 -1.3970 13 6 9.8016 -3.2140 -1.2365 14 6 10.5657 -4.3000 -1.9965 15 6 12.0476 -4.0760 -1.8379 16 1 12.4081 -3.2426 -1.2533 17 6 12.9429 -4.9349 -2.4393 18 7 14.2360 -4.7396 -2.3005 19 14 12.3192 -6.3767 -3.4501 20 1 12.1546 -5.9553 -4.8644 21 1 13.2964 -7.4924 -3.3763 22 1 11.0106 -6.8287 -2.9127 23 6 3.5695 -0.7223 1.2495 24 6 2.0395 -0.7218 1.2492 25 1 1.6758 -1.7492 1.2490 26 6 1.5295 0.0000 2.4982 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6766 -0.2073 -2.1392 31 1 1.6766 -1.7490 -1.2493 32 1 3.9337 0.3057 -1.2487 33 1 3.9333 -1.2360 -2.1387 34 1 6.0300 -0.7568 0.4821 35 1 8.0509 -1.7150 -0.1864 36 1 8.0342 -3.3986 -2.4539 37 1 8.0328 -4.4206 -0.9966 38 1 10.0648 -3.2570 -0.1797 39 1 10.0656 -2.2354 -1.6372 40 1 10.3016 -5.2785 -1.5954 41 1 10.3026 -4.2575 -3.0534 42 1 14.8659 -5.3437 -2.7239 43 1 3.9328 -1.2361 2.1395 44 1 3.9332 0.3052 1.2497 45 1 0.4395 0.0007 2.4977 46 1 1.8925 -0.5139 3.3884 47 1 1.8932 1.0275 2.4980 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248543031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:38 Heat of formation + Delta-G solvation = -77.552369 kcal Electronic energy + Delta-G solvation = -22051.770628 eV Core-core repulsion = 18846.573590 eV Total energy + Delta-G solvation = -3205.197038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31589 -38.99469 -35.72436 -34.75242 -33.30686 -32.54730 -31.75241 -30.78519 -27.64920 -26.92430 -25.43171 -22.92448 -22.27881 -21.30403 -20.70502 -20.37547 -19.88012 -18.06377 -16.84957 -16.28019 -15.57048 -15.22339 -14.92928 -14.76718 -14.61935 -14.40846 -14.05067 -13.99565 -13.73011 -13.13268 -12.86989 -12.66240 -12.41650 -12.21556 -12.09357 -12.05424 -11.89399 -11.76483 -11.27163 -11.19259 -11.04393 -10.90696 -10.87335 -10.55627 -10.36382 -10.21084 -9.97207 -9.79402 -9.64983 -9.21318 -9.16510 -8.63640 -8.54247 -6.05226 -4.03774 2.79699 3.32668 3.35978 3.40062 3.44912 4.26599 4.28877 4.34299 4.45747 4.56727 4.65720 4.81401 5.03302 5.08258 5.14967 5.22478 5.23044 5.24443 5.28996 5.43407 5.44622 5.53390 5.57161 5.64710 5.65316 5.68776 5.72095 5.83853 5.93244 5.94514 6.01433 6.06668 6.08083 6.20127 6.41877 6.49456 6.52692 6.73019 6.85459 7.05722 7.25450 7.38704 7.77176 8.15035 8.51454 8.75203 8.98639 9.57152 11.07980 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046309 B = 0.002364 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.487519 B =11843.350865 C =12144.239928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.130 4.130 6 C 0.165 3.835 7 H 0.086 0.914 8 N -0.748 5.748 9 C 0.701 3.299 10 O -0.594 6.594 11 N -0.743 5.743 12 C 0.133 3.867 13 C -0.113 4.113 14 C -0.011 4.011 15 C -0.521 4.521 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C -0.121 4.121 24 C -0.083 4.083 25 H 0.073 0.927 26 C -0.149 4.149 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.393 0.607 35 H 0.395 0.605 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.263 0.737 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.401 12.308 8.163 31.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.169 4.169 6 C 0.060 3.940 7 H 0.104 0.896 8 N -0.403 5.403 9 C 0.400 3.600 10 O -0.472 6.472 11 N -0.397 5.397 12 C 0.010 3.990 13 C -0.151 4.151 14 C -0.049 4.049 15 C -0.559 4.559 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.159 4.159 24 C -0.102 4.102 25 H 0.091 0.909 26 C -0.206 4.206 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.227 0.773 35 H 0.228 0.772 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.766 11.396 7.540 30.946 hybrid contribution 0.424 -0.082 -0.142 0.454 sum -27.342 11.315 7.398 30.502 Atomic orbital electron populations 1.21895 0.95294 1.01890 1.01622 1.21206 0.95463 0.99572 0.94432 0.91187 1.21559 0.95023 1.00958 0.97437 1.21952 0.95466 1.00669 0.98836 1.20759 0.78289 1.00645 0.94314 0.89575 1.45219 1.06835 1.31425 1.56802 1.16030 0.82025 0.81970 0.79939 1.90908 1.67926 1.39633 1.48775 1.45344 1.04334 1.33267 1.56755 1.21497 0.92058 0.89658 0.95810 1.21701 0.90710 1.01201 1.01453 1.19505 0.96132 0.94098 0.95188 1.21099 0.88752 1.13478 1.32597 0.91031 1.25035 0.94762 0.97669 0.96086 1.69914 1.01190 1.38344 1.44785 0.86771 0.79105 0.82494 0.80908 1.20247 1.21389 1.18856 1.21871 0.95738 1.00904 0.97396 1.21096 0.94169 1.00128 0.94786 0.90869 1.21885 1.01205 1.00397 0.97104 0.92668 0.92425 0.92812 0.91776 0.91693 0.92025 0.91219 0.77338 0.77222 0.92052 0.92034 0.92165 0.92187 0.96283 0.96718 0.92721 0.91264 0.91450 0.92239 0.92700 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.84 37.16 0.33 -0.52 16 2 C -0.09 -0.56 2.25 -90.62 -0.20 -0.77 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.11 -0.87 5.20 -26.73 -0.14 -1.01 16 5 C -0.13 -1.24 5.49 -26.73 -0.15 -1.38 16 6 C 0.17 1.61 2.45 -67.93 -0.17 1.45 16 7 H 0.09 1.05 7.58 -51.93 -0.39 0.65 16 8 N -0.75 -7.96 5.08 -58.68 -0.30 -8.26 16 9 C 0.70 10.48 8.53 -86.92 -0.74 9.74 16 10 O -0.59 -11.40 16.01 5.29 0.08 -11.31 16 11 N -0.74 -10.50 5.56 -65.22 -0.36 -10.87 16 12 C 0.13 2.28 5.67 -4.04 -0.02 2.25 16 13 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 14 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 15 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 16 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 19 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 22 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 23 C -0.12 -0.85 4.67 -26.73 -0.12 -0.98 16 24 C -0.08 -0.53 2.25 -90.62 -0.20 -0.73 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 C -0.15 -0.80 8.84 37.16 0.33 -0.47 16 27 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 28 H 0.06 0.29 6.43 -51.93 -0.33 -0.04 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.39 3.08 8.62 -40.82 -0.35 2.73 16 35 H 0.39 4.44 8.49 -40.82 -0.35 4.09 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 41 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.30 6.43 -51.93 -0.33 -0.04 16 46 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 366.35 15.07 5.52 5.52 Total: -1.00 -33.02 366.35 -9.60 -42.62 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.88 Total: 0.50 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -1.78 Total: -8.35 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.11 Total: -46.22 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.02 -9.60 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248543031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.928 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds