Wall clock time and date at job start Tue Mar 31 2020 06:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53006 * 109.46997 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46974 * 59.99987 * 5 4 2 7 7 H 1.09002 * 109.47045 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47194 * 60.00428 * 6 5 4 9 9 C 1.34776 * 120.00464 * 84.99718 * 8 6 5 10 10 O 1.21587 * 119.99608 * 0.02562 * 9 8 6 11 11 N 1.34767 * 120.00390 * 180.02562 * 9 8 6 12 12 C 1.46502 * 120.00230 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47247 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46848 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46565 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00292 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99699 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99949 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00012 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47224 * 89.99867 * 19 17 15 21 21 H 1.48501 * 109.47309 * 210.00045 * 19 17 15 22 22 H 1.48506 * 109.47156 * 329.99851 * 19 17 15 23 23 C 1.53002 * 109.47092 * 300.00168 * 6 5 4 24 24 C 1.52996 * 109.47343 * 60.00063 * 23 6 5 25 25 H 1.09000 * 109.46870 * 59.99786 * 24 23 6 26 26 C 1.53002 * 109.47346 * 179.97438 * 24 23 6 27 27 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 31 31 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 32 32 H 1.09000 * 109.46866 * 300.00212 * 5 4 2 33 33 H 1.09001 * 109.47377 * 180.02562 * 5 4 2 34 34 H 0.97005 * 119.99633 * 265.00192 * 8 6 5 35 35 H 0.97010 * 120.00113 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.47083 * 299.99713 * 12 11 9 37 37 H 1.08999 * 109.47000 * 59.99894 * 12 11 9 38 38 H 1.09001 * 109.46647 * 299.99737 * 13 12 11 39 39 H 1.08996 * 109.47267 * 59.99388 * 13 12 11 40 40 H 1.08994 * 109.47128 * 299.99656 * 14 13 12 41 41 H 1.08999 * 109.47057 * 59.99861 * 14 13 12 42 42 H 0.97000 * 119.99897 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.47059 * 299.99666 * 23 6 5 44 44 H 1.09004 * 109.46930 * 180.02562 * 23 6 5 45 45 H 1.09002 * 109.47070 * 180.02562 * 26 24 23 46 46 H 1.08992 * 109.46974 * 300.00318 * 26 24 23 47 47 H 1.08996 * 109.46550 * 60.00424 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5700 -0.7208 -1.2497 6 6 4.0805 -1.4416 -0.0005 7 1 5.1705 -1.4409 -0.0005 8 7 3.5927 -2.8230 -0.0001 9 6 4.2697 -3.7769 -0.6696 10 8 5.2855 -3.4911 -1.2735 11 7 3.8206 -5.0476 -0.6698 12 6 4.5568 -6.0846 -1.3970 13 6 3.8392 -7.4265 -1.2374 14 6 4.6077 -8.5094 -1.9975 15 6 3.9012 -9.8311 -1.8398 16 1 2.9946 -9.8926 -1.2562 17 6 4.4124 -10.9620 -2.4406 18 7 5.5167 -10.8873 -3.1508 19 14 3.5364 -12.6002 -2.2457 20 1 2.5481 -12.7665 -3.3415 21 1 4.5296 -13.7027 -2.3034 22 1 2.8350 -12.6339 -0.9371 23 6 3.5706 -0.7204 1.2488 24 6 2.0406 -0.7209 1.2492 25 1 1.6776 -1.7487 1.2494 26 6 1.5306 -0.0001 2.4988 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6766 -1.7490 -1.2493 31 1 1.6767 -0.2074 -2.1393 32 1 3.9329 0.3070 -1.2499 33 1 3.9333 -1.2342 -2.1399 34 1 2.7824 -3.0511 0.4819 35 1 3.0099 -5.2756 -0.1883 36 1 4.6051 -5.8224 -2.4539 37 1 5.5671 -6.1624 -0.9954 38 1 3.7905 -7.6890 -0.1806 39 1 2.8290 -7.3484 -1.6393 40 1 4.6560 -8.2466 -3.0542 41 1 5.6180 -8.5875 -1.5960 42 1 5.8761 -11.6828 -3.5738 43 1 3.9336 0.3074 1.2486 44 1 3.9347 -1.2337 2.1388 45 1 0.4406 -0.0009 2.4993 46 1 1.8944 -0.5140 3.3885 47 1 1.8936 1.0276 2.4989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248543033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:40 Heat of formation + Delta-G solvation = -77.555234 kcal Electronic energy + Delta-G solvation = -22424.543285 eV Core-core repulsion = 19219.346123 eV Total energy + Delta-G solvation = -3205.197162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.48008 -38.83673 -35.51047 -34.50903 -33.29705 -32.49348 -31.67008 -30.51376 -27.57002 -26.55135 -25.66199 -23.17230 -22.15908 -21.24128 -20.93415 -20.49961 -19.24854 -18.06909 -16.51446 -15.97769 -15.71928 -15.16011 -14.88817 -14.77543 -14.43915 -14.39624 -14.15351 -13.84551 -13.68408 -13.23533 -12.67184 -12.33033 -12.26505 -12.15604 -12.05503 -11.84448 -11.79623 -11.70891 -11.57871 -11.23800 -10.89287 -10.74321 -10.69386 -10.57586 -10.36734 -10.17451 -10.01443 -9.83209 -9.41349 -9.10616 -9.08380 -8.53675 -8.35684 -6.00326 -4.03325 2.90923 3.31628 3.37941 3.40771 3.45181 4.32101 4.36840 4.39656 4.43357 4.49346 4.70938 4.90873 5.05543 5.10376 5.15330 5.24843 5.26590 5.35393 5.38042 5.40667 5.49059 5.58906 5.66584 5.71654 5.72459 5.76247 5.83140 5.85440 5.93247 6.02305 6.05949 6.13777 6.21185 6.22592 6.58424 6.61421 6.65842 6.86202 7.05857 7.15597 7.65867 7.79076 7.98878 8.23339 8.39877 8.84284 9.03473 9.60672 11.11019 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029257 B = 0.002608 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.793363 B =10734.499320 C =11086.306448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 H 0.069 0.931 4 C -0.112 4.112 5 C -0.132 4.132 6 C 0.166 3.834 7 H 0.087 0.913 8 N -0.744 5.744 9 C 0.700 3.300 10 O -0.594 6.594 11 N -0.743 5.743 12 C 0.136 3.864 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.122 4.122 24 C -0.087 4.087 25 H 0.068 0.932 26 C -0.149 4.149 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.392 0.608 35 H 0.392 0.608 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.467 24.621 10.022 28.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.171 4.171 6 C 0.060 3.940 7 H 0.105 0.895 8 N -0.401 5.401 9 C 0.399 3.601 10 O -0.472 6.472 11 N -0.397 5.397 12 C 0.012 3.988 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.160 4.160 24 C -0.106 4.106 25 H 0.086 0.914 26 C -0.207 4.207 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.226 0.774 35 H 0.225 0.775 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.369 24.759 9.344 27.755 hybrid contribution -1.206 -1.219 0.450 1.773 sum -9.574 23.540 9.795 27.234 Atomic orbital electron populations 1.21898 0.95379 1.01876 1.01568 1.21180 0.95355 0.99502 0.94445 0.91248 1.21550 0.95505 1.00784 0.97153 1.21947 0.95770 1.00435 0.98930 1.20713 0.99320 0.79686 0.94274 0.89528 1.45259 1.30050 1.07996 1.56746 1.16052 0.83247 0.80791 0.79973 1.90907 1.26025 1.81515 1.48802 1.45394 1.30358 1.07170 1.56822 1.21487 0.95409 0.86102 0.95774 1.21885 0.99580 0.93161 1.01173 1.19026 0.95431 0.91604 0.95317 1.21210 1.09885 0.93186 1.31742 0.92672 1.25033 0.95019 0.99169 0.95277 1.69967 1.20615 1.29298 1.33406 0.86583 0.79353 0.83526 0.78454 1.20673 1.21211 1.19906 1.21905 0.95484 1.01122 0.97489 1.21153 0.94991 0.99628 0.94826 0.91378 1.21889 1.01200 1.00425 0.97139 0.92476 0.92851 0.92710 0.91845 0.92168 0.91384 0.91154 0.77383 0.77472 0.92050 0.92036 0.92820 0.92831 0.96263 0.96248 0.92934 0.90456 0.91243 0.92325 0.92734 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.84 37.16 0.33 -0.60 16 2 C -0.09 -0.57 2.25 -90.62 -0.20 -0.78 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 4 C -0.11 -0.93 5.05 -26.73 -0.13 -1.06 16 5 C -0.13 -1.27 5.60 -26.73 -0.15 -1.42 16 6 C 0.17 1.64 2.78 -67.93 -0.19 1.45 16 7 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 8 N -0.74 -8.14 4.24 -58.68 -0.25 -8.39 16 9 C 0.70 10.82 8.53 -86.93 -0.74 10.08 16 10 O -0.59 -11.77 16.01 5.29 0.08 -11.69 16 11 N -0.74 -11.03 5.56 -65.22 -0.36 -11.39 16 12 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 13 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 19 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.12 -0.87 4.89 -26.73 -0.13 -1.00 16 24 C -0.09 -0.55 2.08 -90.62 -0.19 -0.74 16 25 H 0.07 0.45 6.51 -51.93 -0.34 0.11 16 26 C -0.15 -0.82 8.84 37.16 0.33 -0.50 16 27 H 0.06 0.31 6.43 -51.93 -0.33 -0.02 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.59 7.61 -51.93 -0.39 0.19 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.39 3.36 6.88 -40.82 -0.28 3.08 16 35 H 0.39 4.67 8.49 -40.82 -0.35 4.32 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.31 6.43 -51.93 -0.33 -0.03 16 46 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 365.53 15.07 5.51 5.51 Total: -1.00 -32.46 365.53 -9.82 -42.29 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.73 Total: 1.02 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -1.79 Total: -7.63 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.13 Total: -46.07 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.46 -9.82 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248543033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.269 kcal (2) G-P(sol) polarization free energy of solvation -32.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds