Wall clock time and date at job start Tue Mar 31 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.46620 * 2 1 4 4 C 1.50696 * 109.46561 * 240.00339 * 2 1 3 5 5 O 1.21282 * 120.00452 * 17.11040 * 4 2 1 6 6 N 1.34776 * 119.99782 * 197.11220 * 4 2 1 7 7 C 1.46507 * 119.99816 * 353.69142 * 6 4 2 8 8 C 1.46500 * 120.00151 * 173.69529 * 6 4 2 9 9 C 1.50705 * 109.47222 * 89.99810 * 8 6 4 10 10 H 1.07998 * 119.99831 * 0.02562 * 9 8 6 11 11 C 1.37875 * 120.00343 * 179.97438 * 9 8 6 12 12 N 1.31519 * 119.99560 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00411 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47409 * 89.99999 * 13 11 9 15 15 H 1.48502 * 109.47095 * 210.00343 * 13 11 9 16 16 H 1.48506 * 109.46903 * 329.99682 * 13 11 9 17 17 N 1.46902 * 109.47224 * 120.00457 * 2 1 3 18 18 C 1.47625 * 111.00168 * 56.30554 * 17 2 1 19 19 C 1.50814 * 108.03208 * 150.30641 * 18 17 2 20 20 C 1.53819 * 111.61354 * 95.06982 * 19 18 17 21 21 C 1.54165 * 111.97398 * 319.04322 * 20 19 18 22 22 C 1.50757 * 112.61465 * 318.48438 * 21 20 19 23 23 H 1.09004 * 109.54237 * 333.14275 * 22 21 20 24 24 C 1.52997 * 109.61761 * 212.91798 * 22 21 20 25 25 C 1.39786 * 110.99603 * 287.39763 * 17 2 1 26 26 H 1.08997 * 109.47038 * 184.81838 * 1 2 3 27 27 H 1.09005 * 109.46328 * 304.81355 * 1 2 3 28 28 H 1.08998 * 109.47361 * 64.81550 * 1 2 3 29 29 H 1.08998 * 109.46612 * 93.96618 * 7 6 4 30 30 H 1.09000 * 109.47101 * 213.96525 * 7 6 4 31 31 H 1.08995 * 109.46985 * 333.96397 * 7 6 4 32 32 H 1.09000 * 109.47092 * 209.99278 * 8 6 4 33 33 H 1.08996 * 109.47487 * 329.99694 * 8 6 4 34 34 H 0.97002 * 120.00107 * 179.97438 * 12 11 9 35 35 H 1.09000 * 109.74768 * 269.94435 * 18 17 2 36 36 H 1.09000 * 109.75007 * 30.62592 * 18 17 2 37 37 H 1.08998 * 109.05154 * 215.61383 * 19 18 17 38 38 H 1.09000 * 109.05548 * 334.51995 * 19 18 17 39 39 H 1.09004 * 108.97937 * 79.68891 * 20 19 18 40 40 H 1.09006 * 108.97889 * 198.40146 * 20 19 18 41 41 H 1.09002 * 108.85830 * 197.67785 * 21 20 19 42 42 H 1.09002 * 108.85554 * 79.28892 * 21 20 19 43 43 H 1.09003 * 109.46998 * 300.21828 * 24 22 21 44 44 H 1.08992 * 109.46865 * 60.21920 * 24 22 21 45 45 H 1.09000 * 109.47046 * 180.21945 * 24 22 21 46 46 H 1.09002 * 109.02091 * 68.55388 * 25 17 2 47 47 H 1.09001 * 108.96260 * 309.68616 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.2880 -0.8958 -2.1699 6 7 3.3086 -1.1396 -1.2871 7 6 4.2452 -0.7960 -0.2141 8 6 3.7595 -1.9495 -2.4215 9 6 4.2806 -1.0453 -3.5087 10 1 4.2767 0.0255 -3.3685 11 6 4.7632 -1.5852 -4.6820 12 7 4.7693 -2.8893 -4.8521 13 14 5.4098 -0.4645 -6.0293 14 1 6.8631 -0.2354 -5.8278 15 1 5.1879 -1.1018 -7.3522 16 1 4.6922 0.8347 -5.9792 17 7 2.0198 -0.6926 1.1994 18 6 1.4753 -2.0625 1.2787 19 6 2.4816 -2.9238 1.9998 20 6 2.1644 -3.0293 3.5012 21 6 1.7112 -1.6791 4.0914 22 6 2.5253 -0.5192 3.5772 23 1 3.5185 -0.8679 3.2940 24 6 2.6487 0.5458 4.6687 25 6 1.8189 0.0847 2.3437 26 1 -0.3633 -1.0240 0.0863 27 1 -0.3632 0.5868 0.8438 28 1 -0.3634 0.4373 -0.9299 29 1 4.2644 -1.5994 0.5223 30 1 5.2430 -0.6621 -0.6318 31 1 3.9249 0.1289 0.2654 32 1 4.5539 -2.6209 -2.0956 33 1 2.9238 -2.5347 -2.8051 34 1 5.1086 -3.2691 -5.6777 35 1 0.5353 -2.0538 1.8303 36 1 1.3092 -2.4515 0.2741 37 1 2.4728 -3.9225 1.5633 38 1 3.4743 -2.4912 1.8755 39 1 1.3715 -3.7633 3.6453 40 1 3.0568 -3.3654 4.0293 41 1 1.8032 -1.7203 5.1767 42 1 0.6645 -1.5160 3.8346 43 1 1.6549 0.8937 4.9508 44 1 3.1445 0.1175 5.5397 45 1 3.2343 1.3849 4.2931 46 1 0.7496 0.1520 2.5442 47 1 2.2103 1.0861 2.1649 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248544131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:28 Heat of formation + Delta-G solvation = -32.929082 kcal Electronic energy + Delta-G solvation = -24371.546324 eV Core-core repulsion = 21168.284297 eV Total energy + Delta-G solvation = -3203.262027 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.41891 -38.31935 -35.29009 -34.68692 -33.35499 -32.43916 -30.24177 -28.00683 -27.78829 -25.88289 -25.06692 -24.88585 -23.44193 -21.75157 -20.27953 -19.41163 -18.08033 -16.57409 -16.44915 -16.06277 -15.40003 -15.25592 -14.74093 -14.65643 -14.30703 -14.05696 -13.58602 -13.28693 -13.04392 -12.74753 -12.57833 -12.43279 -12.11653 -12.03526 -11.81940 -11.72098 -11.51994 -11.33193 -11.21499 -11.08355 -11.00605 -10.79740 -10.69954 -10.57448 -10.48061 -10.36289 -10.16377 -10.07549 -9.51868 -8.83853 -8.36903 -8.02200 -7.42831 -5.97266 -4.01269 3.34264 3.38796 3.41194 3.46607 4.01068 4.13410 4.51397 4.61692 4.71130 4.80224 5.04568 5.10993 5.14746 5.24593 5.31877 5.36148 5.40204 5.46793 5.49024 5.54769 5.56700 5.71775 5.77408 5.82807 5.85853 5.90132 5.95742 6.02623 6.11156 6.13423 6.18259 6.24261 6.29320 6.35186 6.39563 6.48840 6.68146 7.07656 7.20898 7.45959 7.52629 7.70627 8.00295 8.32385 8.60298 8.98753 9.23545 9.63668 11.10580 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025688 B = 0.004471 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.748122 B = 6261.506757 C = 6417.434479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.066 3.934 3 H 0.099 0.901 4 C 0.511 3.489 5 O -0.547 6.547 6 N -0.587 5.587 7 C 0.105 3.895 8 C 0.247 3.753 9 C -0.520 4.520 10 H 0.056 0.944 11 C 0.060 3.940 12 N -0.897 5.897 13 Si 0.897 3.103 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.275 1.275 17 N -0.538 5.538 18 C 0.068 3.932 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.115 4.115 22 C -0.090 4.090 23 H 0.084 0.916 24 C -0.143 4.143 25 C 0.079 3.921 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.262 0.738 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.020 0.980 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 3.950 20.417 21.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.044 4.044 3 H 0.117 0.883 4 C 0.296 3.704 5 O -0.425 6.425 6 N -0.318 5.318 7 C -0.039 4.039 8 C 0.127 3.873 9 C -0.559 4.559 10 H 0.074 0.926 11 C -0.142 4.142 12 N -0.536 5.536 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 N -0.263 5.263 18 C -0.058 4.058 19 C -0.158 4.158 20 C -0.154 4.154 21 C -0.152 4.152 22 C -0.109 4.109 23 H 0.102 0.898 24 C -0.201 4.201 25 C -0.051 4.051 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.038 0.962 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.626 3.638 19.748 20.606 hybrid contribution -0.379 0.687 -0.669 1.031 sum -5.005 4.325 19.079 20.193 Atomic orbital electron populations 1.22153 0.95274 1.02522 1.02421 1.21875 0.94503 0.98836 0.89225 0.88341 1.20080 0.82708 0.80068 0.87562 1.90677 1.56522 1.57034 1.38287 1.48000 1.09005 1.51522 1.23234 1.21610 0.92689 1.00085 0.89490 1.19228 0.95394 0.90234 0.82426 1.21447 1.40482 0.93462 1.00547 0.92570 1.24930 0.95980 0.95075 0.98198 1.69938 1.46905 1.10213 1.26585 0.86516 0.78920 0.80832 0.81258 1.20707 1.21168 1.19948 1.59180 1.61639 1.03102 1.02360 1.21775 0.95802 0.87627 1.00641 1.21471 1.00899 0.99558 0.93895 1.21912 1.00778 0.96572 0.96091 1.21478 0.99624 0.94466 0.99658 1.21026 1.00586 0.95064 0.94184 0.89786 1.21822 1.01399 0.98692 0.98147 1.21025 0.97636 0.96609 0.89805 0.92178 0.92801 0.90832 0.93218 0.92929 0.92028 0.95151 0.94373 0.92847 0.94063 0.90718 0.91943 0.89991 0.92705 0.92358 0.92475 0.92678 0.93052 0.92694 0.92555 0.96168 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 8.24 37.16 0.31 -2.01 16 2 C 0.07 1.01 1.77 -68.86 -0.12 0.89 16 3 H 0.10 1.39 7.65 -51.93 -0.40 0.99 16 4 C 0.51 10.71 5.77 -10.99 -0.06 10.65 16 5 O -0.55 -13.98 15.55 5.56 0.09 -13.90 16 6 N -0.59 -12.66 2.86 -182.95 -0.52 -13.18 16 7 C 0.11 1.78 9.06 59.85 0.54 2.33 16 8 C 0.25 6.58 5.13 -5.19 -0.03 6.55 16 9 C -0.52 -15.11 9.39 -34.44 -0.32 -15.43 16 10 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 13 Si 0.90 22.31 29.54 -169.99 -5.02 17.28 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 17 N -0.54 -6.78 1.22 -233.38 -0.29 -7.07 16 18 C 0.07 0.89 3.74 -4.52 -0.02 0.87 16 19 C -0.12 -1.40 5.33 -27.40 -0.15 -1.55 16 20 C -0.12 -1.10 5.91 -25.70 -0.15 -1.25 16 21 C -0.11 -1.01 4.88 -27.25 -0.13 -1.15 16 22 C -0.09 -0.81 2.44 -90.99 -0.22 -1.03 16 23 H 0.08 0.84 7.11 -51.93 -0.37 0.47 16 24 C -0.14 -1.08 8.90 37.16 0.33 -0.74 16 25 C 0.08 0.81 4.05 -6.74 -0.03 0.78 16 26 H 0.06 0.88 6.66 -51.93 -0.35 0.53 16 27 H 0.05 0.62 7.14 -51.93 -0.37 0.25 16 28 H 0.07 1.14 7.74 -51.93 -0.40 0.74 16 29 H 0.05 0.76 5.62 -51.93 -0.29 0.47 16 30 H 0.05 0.94 8.10 -51.93 -0.42 0.51 16 31 H 0.06 0.92 6.29 -51.93 -0.33 0.59 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.04 1.14 7.52 -51.93 -0.39 0.75 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.04 0.50 6.47 -51.93 -0.34 0.17 16 36 H 0.07 1.21 6.49 -51.93 -0.34 0.87 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.02 5.08 -51.93 -0.26 0.75 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.46 7.69 -51.93 -0.40 0.06 16 42 H 0.05 0.52 6.58 -51.93 -0.34 0.18 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 0.38 8.09 -51.93 -0.42 -0.04 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.02 0.21 6.44 -51.93 -0.33 -0.12 16 47 H 0.07 0.69 7.64 -51.93 -0.40 0.29 16 LS Contribution 347.05 15.07 5.23 5.23 Total: -1.00 -32.05 347.05 -8.15 -40.19 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -8.22 Total: -2.74 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -0.15 Total: 0.56 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.07 Total: -46.63 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.90 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.05 -8.15 -40.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248544131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.265 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds