Wall clock time and date at job start Tue Mar 31 2020 06:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.51885 * 2 1 4 4 C 1.53119 * 109.52365 * 120.13189 * 2 1 3 5 5 C 1.53031 * 109.27616 * 177.62279 * 4 2 1 6 6 N 1.46843 * 109.51704 * 300.82228 * 5 4 2 7 7 C 1.46900 * 111.00243 * 185.83788 * 6 5 4 8 8 C 1.52999 * 109.47314 * 86.58017 * 7 6 5 9 9 C 1.53001 * 109.46928 * 297.12403 * 8 7 6 10 10 C 1.52997 * 109.47116 * 57.12470 * 8 7 6 11 11 C 1.53000 * 109.47303 * 177.12228 * 8 7 6 12 12 C 1.50694 * 109.47241 * 179.97438 * 11 8 7 13 13 H 1.08003 * 120.00150 * 359.97438 * 12 11 8 14 14 C 1.37881 * 119.99947 * 180.02562 * 12 11 8 15 15 N 1.31513 * 120.00053 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99956 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46859 * 90.00445 * 16 14 12 18 18 H 1.48498 * 109.46882 * 210.00049 * 16 14 12 19 19 H 1.48493 * 109.47121 * 329.99900 * 16 14 12 20 20 C 1.46824 * 111.21040 * 61.75098 * 6 5 4 21 21 H 1.08999 * 109.45638 * 58.25543 * 20 6 5 22 22 C 1.50699 * 109.46786 * 178.23550 * 20 6 5 23 23 N 1.34779 * 119.99796 * 208.66487 * 22 20 6 24 24 O 1.21282 * 120.00022 * 28.67265 * 22 20 6 25 25 C 1.53040 * 109.51583 * 298.25316 * 20 6 5 26 26 H 1.08996 * 109.46897 * 299.87230 * 1 2 3 27 27 H 1.09004 * 109.47066 * 59.86991 * 1 2 3 28 28 H 1.09003 * 109.47261 * 179.86623 * 1 2 3 29 29 H 1.08995 * 109.50194 * 57.67980 * 4 2 1 30 30 H 1.09002 * 109.53009 * 297.58266 * 4 2 1 31 31 H 1.09001 * 109.46697 * 60.83991 * 5 4 2 32 32 H 1.09005 * 109.46216 * 180.81606 * 5 4 2 33 33 H 1.09003 * 109.47282 * 206.58127 * 7 6 5 34 34 H 1.09005 * 109.47198 * 326.57549 * 7 6 5 35 35 H 1.08997 * 109.46702 * 71.16283 * 9 8 7 36 36 H 1.09003 * 109.46765 * 191.16018 * 9 8 7 37 37 H 1.09002 * 109.47200 * 311.15841 * 9 8 7 38 38 H 1.08997 * 109.47572 * 59.99881 * 10 8 7 39 39 H 1.08995 * 109.47179 * 180.02562 * 10 8 7 40 40 H 1.09004 * 109.47243 * 300.00322 * 10 8 7 41 41 H 1.08995 * 109.47191 * 300.00277 * 11 8 7 42 42 H 1.09001 * 109.46726 * 60.00033 * 11 8 7 43 43 H 0.96999 * 120.00414 * 179.97438 * 15 14 12 44 44 H 0.96998 * 120.00519 * 0.02562 * 23 22 20 45 45 H 0.97003 * 119.99793 * 179.97438 * 23 22 20 46 46 H 1.08995 * 109.50092 * 299.23324 * 25 20 6 47 47 H 1.09003 * 109.53314 * 179.14015 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0418 -0.7245 1.2481 5 6 3.5709 -0.7732 1.2127 6 7 4.0114 -1.4766 0.0013 7 6 5.4683 -1.6642 0.0018 8 6 5.8166 -2.9515 0.7517 9 6 5.3786 -2.8253 2.2123 10 6 5.0919 -4.1321 0.1021 11 6 7.3275 -3.1845 0.6907 12 6 7.6705 -4.4521 1.4298 13 1 6.8891 -5.0333 1.8969 14 6 8.9822 -4.8695 1.5108 15 7 9.2815 -5.9760 2.1555 16 14 10.3338 -3.8640 0.7037 17 1 10.8523 -2.8644 1.6717 18 1 11.4371 -4.7648 0.2836 19 1 9.7865 -3.1636 -0.4858 20 6 3.5722 -0.7735 -1.2105 21 1 3.9678 0.2421 -1.2046 22 6 4.0809 -1.5034 -2.4269 23 7 4.3281 -0.8255 -3.5652 24 8 4.2676 -2.7009 -2.3815 25 6 2.0430 -0.7247 -1.2475 26 1 -0.3633 0.5118 0.8911 27 1 -0.3633 0.5159 -0.8888 28 1 -0.3634 -1.0277 -0.0024 29 1 1.6456 -1.7397 1.2677 30 1 1.7152 -0.1892 2.1397 31 1 3.9666 0.2425 1.2072 32 1 3.9379 -1.3011 2.0929 33 1 5.8261 -1.7340 -1.0255 34 1 5.9437 -0.8163 0.4951 35 1 4.2906 -2.8584 2.2694 36 1 5.7980 -3.6491 2.7898 37 1 5.7351 -1.8785 2.6180 38 1 5.4039 -4.2220 -0.9383 39 1 5.3396 -5.0491 0.6366 40 1 4.0155 -3.9661 0.1455 41 1 7.6395 -3.2744 -0.3498 42 1 7.8438 -2.3434 1.1535 43 1 10.2042 -6.2699 2.2122 44 1 4.1790 0.1323 -3.6015 45 1 4.6559 -1.2953 -4.3480 46 1 1.6470 -1.7400 -1.2672 47 1 1.7169 -0.1895 -2.1393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249788586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:52 Heat of formation + Delta-G solvation = -49.475217 kcal Electronic energy + Delta-G solvation = -24300.504936 eV Core-core repulsion = 21096.525414 eV Total energy + Delta-G solvation = -3203.979521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.41691 -38.12089 -36.72740 -33.80737 -33.60772 -32.03352 -31.04104 -28.62937 -27.41945 -26.20104 -25.03970 -24.26600 -22.46703 -21.82838 -20.23576 -19.67937 -17.78393 -17.31697 -16.73182 -16.63494 -15.56989 -15.10026 -14.74261 -14.47989 -14.22520 -14.05102 -13.58774 -13.44969 -13.21015 -12.98171 -12.50710 -12.47693 -12.12608 -12.04175 -11.92774 -11.60385 -11.38496 -11.05837 -10.90539 -10.77500 -10.74709 -10.57212 -10.32889 -10.23929 -10.05544 -9.67815 -9.63990 -9.54555 -9.40687 -9.03168 -8.80292 -8.40018 -7.96544 -5.90502 -3.85185 2.73251 3.37663 3.39442 3.45087 3.50137 4.08030 4.56701 4.61247 4.66671 4.69114 5.00577 5.08335 5.13393 5.36443 5.42810 5.48045 5.48522 5.52379 5.57955 5.64147 5.78407 5.88188 5.94384 5.99351 6.05517 6.09431 6.12805 6.24530 6.34902 6.42655 6.60669 6.76569 6.85491 6.88777 7.11982 7.16022 7.29041 7.32147 7.41166 7.44278 7.51921 7.56921 7.71847 7.97005 8.39098 8.71643 9.16788 9.73188 11.22858 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022838 B = 0.004942 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.721740 B = 5664.513134 C = 6324.479551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.065 0.935 4 C -0.113 4.113 5 C 0.039 3.961 6 N -0.506 5.506 7 C 0.064 3.936 8 C -0.037 4.037 9 C -0.135 4.135 10 C -0.107 4.107 11 C -0.004 4.004 12 C -0.500 4.500 13 H 0.079 0.921 14 C 0.064 3.936 15 N -0.908 5.908 16 Si 0.874 3.126 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.268 1.268 20 C 0.070 3.930 21 H 0.050 0.950 22 C 0.513 3.487 23 N -0.864 5.864 24 O -0.500 6.500 25 C -0.098 4.098 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.026 0.974 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.029 0.971 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.012 0.988 42 H 0.004 0.996 43 H 0.260 0.740 44 H 0.396 0.604 45 H 0.400 0.600 46 H 0.079 0.921 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.297 16.771 -7.701 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.084 0.916 4 C -0.150 4.150 5 C -0.089 4.089 6 N -0.231 5.231 7 C -0.063 4.063 8 C -0.038 4.038 9 C -0.191 4.191 10 C -0.164 4.164 11 C -0.042 4.042 12 C -0.539 4.539 13 H 0.097 0.903 14 C -0.136 4.136 15 N -0.548 5.548 16 Si 0.702 3.298 17 H -0.206 1.206 18 H -0.216 1.216 19 H -0.192 1.192 20 C -0.042 4.042 21 H 0.068 0.932 22 C 0.297 3.703 23 N -0.429 5.429 24 O -0.372 6.372 25 C -0.137 4.137 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.122 0.878 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.031 0.969 42 H 0.022 0.978 43 H 0.070 0.930 44 H 0.224 0.776 45 H 0.231 0.769 46 H 0.098 0.902 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.305 15.388 -7.422 23.616 hybrid contribution 1.463 1.739 -0.864 2.431 sum -14.842 17.127 -8.286 24.130 Atomic orbital electron populations 1.21800 0.94987 1.02042 1.01396 1.21162 0.95613 0.99008 0.95154 0.91626 1.21678 0.95229 1.01373 0.96770 1.22623 0.95285 0.96405 0.94542 1.61708 1.14282 1.47641 0.99432 1.22404 0.84897 0.98256 1.00733 1.20277 0.96852 0.92857 0.93772 1.22014 0.99008 1.01123 0.97002 1.21505 0.98427 0.96865 0.99605 1.19626 0.91068 0.96987 0.96546 1.21156 0.93650 1.06444 1.32600 0.90334 1.25006 0.98591 0.94886 0.95144 1.69913 1.18681 1.22831 1.43337 0.86862 0.82055 0.80348 0.80492 1.20593 1.21611 1.19244 1.21589 0.96953 0.95331 0.90337 0.93223 1.20521 0.77241 0.88213 0.84373 1.43954 1.71595 1.12541 1.14844 1.90834 1.49051 1.14214 1.83128 1.21572 0.92073 1.02249 0.97759 0.92666 0.92947 0.92416 0.90748 0.91690 0.95599 0.87837 0.91827 0.95294 0.93514 0.91152 0.94767 0.93591 0.93214 0.93602 0.96949 0.97752 0.93020 0.77647 0.76941 0.90185 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.21 37.16 0.34 -0.75 16 2 C -0.09 -0.80 2.79 -90.49 -0.25 -1.06 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.11 -1.17 5.38 -26.65 -0.14 -1.31 16 5 C 0.04 0.49 4.85 -3.84 -0.02 0.47 16 6 N -0.51 -7.46 3.17 -228.10 -0.72 -8.18 16 7 C 0.06 1.14 3.67 -3.82 -0.01 1.13 16 8 C -0.04 -0.78 0.60 -154.51 -0.09 -0.87 16 9 C -0.13 -2.63 6.78 37.16 0.25 -2.37 16 10 C -0.11 -2.35 7.28 37.16 0.27 -2.08 16 11 C 0.00 -0.11 3.11 -27.89 -0.09 -0.20 16 12 C -0.50 -14.46 8.05 -34.44 -0.28 -14.74 16 13 H 0.08 2.42 5.99 -52.48 -0.31 2.11 16 14 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 15 N -0.91 -28.65 13.96 55.43 0.77 -27.88 16 16 Si 0.87 22.58 27.47 -169.99 -4.67 17.91 16 17 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 19 H -0.27 -6.74 6.54 56.52 0.37 -6.37 16 20 C 0.07 0.85 2.23 -68.89 -0.15 0.69 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 C 0.51 6.95 5.74 -10.98 -0.06 6.89 16 23 N -0.86 -7.79 8.87 31.22 0.28 -7.51 16 24 O -0.50 -9.21 14.55 5.56 0.08 -9.13 16 25 C -0.10 -0.98 4.64 -26.65 -0.12 -1.10 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.10 1.43 4.08 -51.93 -0.21 1.22 16 33 H 0.06 1.20 5.79 -51.93 -0.30 0.90 16 34 H 0.03 0.50 7.83 -51.93 -0.41 0.09 16 35 H 0.05 0.81 6.23 -51.93 -0.32 0.49 16 36 H 0.07 1.57 6.33 -51.93 -0.33 1.24 16 37 H 0.03 0.61 7.67 -51.93 -0.40 0.21 16 38 H 0.04 1.07 6.98 -51.93 -0.36 0.71 16 39 H 0.05 1.19 6.62 -51.93 -0.34 0.84 16 40 H 0.04 0.95 7.53 -51.93 -0.39 0.56 16 41 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 42 H 0.00 0.11 7.57 -51.93 -0.39 -0.29 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 44 H 0.40 2.26 8.83 -40.82 -0.36 1.90 16 45 H 0.40 3.34 8.93 -40.82 -0.36 2.98 16 46 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 345.87 15.07 5.21 5.21 Total: -1.00 -33.81 345.87 -7.77 -41.58 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.27 Total: 1.48 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -0.46 Total: -13.49 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.33 Total: -43.57 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.67 Total: 17.91 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.81 -7.77 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249788586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.895 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds