Wall clock time and date at job start Tue Mar 31 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47395 * 2 1 4 4 C 1.50699 * 109.47530 * 120.00628 * 2 1 3 5 5 O 1.21280 * 120.00310 * 120.00189 * 4 2 1 6 6 N 1.34781 * 119.99564 * 299.99976 * 4 2 1 7 7 C 1.46495 * 119.99581 * 180.02562 * 6 4 2 8 8 H 1.08999 * 109.47566 * 324.99982 * 7 6 4 9 9 C 1.53004 * 109.47358 * 85.00103 * 7 6 4 10 10 C 1.53004 * 109.47204 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46975 * 299.99712 * 10 9 7 12 12 C 1.53004 * 109.46919 * 60.00114 * 11 10 9 13 13 H 1.08999 * 109.46881 * 60.00027 * 12 11 10 14 14 C 1.53003 * 109.46861 * 179.97438 * 12 11 10 15 15 C 1.52995 * 109.47055 * 299.99723 * 12 11 10 16 16 H 1.09005 * 109.46562 * 180.02562 * 15 12 11 17 17 C 1.53001 * 109.47217 * 299.99989 * 15 12 11 18 18 N 1.46505 * 109.47004 * 240.00751 * 2 1 3 19 19 C 1.46507 * 119.99766 * 299.99479 * 18 2 1 20 20 C 1.36935 * 120.00134 * 119.99674 * 18 2 1 21 21 H 1.08003 * 120.00179 * 22.70105 * 20 18 2 22 22 C 1.38807 * 119.99993 * 202.69189 * 20 18 2 23 23 N 1.31630 * 119.99887 * 14.12496 * 22 20 18 24 24 Si 1.86802 * 120.00294 * 194.11945 * 22 20 18 25 25 H 1.48502 * 109.46751 * 90.00169 * 24 22 20 26 26 H 1.48494 * 109.47243 * 210.00346 * 24 22 20 27 27 H 1.48499 * 109.46971 * 330.00261 * 24 22 20 28 28 H 1.09000 * 109.46802 * 299.99291 * 1 2 3 29 29 H 1.08991 * 109.47289 * 59.99435 * 1 2 3 30 30 H 1.08998 * 109.46995 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99897 * 359.97438 * 6 4 2 32 32 H 1.09004 * 109.47031 * 299.99466 * 9 7 6 33 33 H 1.08998 * 109.47273 * 59.99829 * 9 7 6 34 34 H 1.08999 * 109.47039 * 179.97438 * 10 9 7 35 35 H 1.08998 * 109.46934 * 59.99880 * 10 9 7 36 36 H 1.08998 * 109.47428 * 299.99866 * 11 10 9 37 37 H 1.09004 * 109.46847 * 179.97438 * 11 10 9 38 38 H 1.08995 * 109.46898 * 180.02562 * 14 12 11 39 39 H 1.09000 * 109.47319 * 300.00212 * 14 12 11 40 40 H 1.08999 * 109.46906 * 60.00588 * 14 12 11 41 41 H 1.09000 * 109.47131 * 180.02562 * 17 15 12 42 42 H 1.08995 * 109.46777 * 300.00004 * 17 15 12 43 43 H 1.08995 * 109.47082 * 60.00073 * 17 15 12 44 44 H 1.08999 * 109.46782 * 95.26223 * 19 18 2 45 45 H 1.09001 * 109.47108 * 215.26382 * 19 18 2 46 46 H 1.08996 * 109.47171 * 335.26413 * 19 18 2 47 47 H 0.96998 * 119.99568 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7298 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1957 -0.9405 3.6505 8 1 2.2328 -2.0133 3.4613 9 6 3.5982 -0.4344 3.9941 10 6 4.1085 -1.1550 5.2437 11 6 3.1644 -0.8756 6.4148 12 6 1.7619 -1.3817 6.0712 13 1 1.7990 -2.4545 5.8823 14 6 0.8180 -1.1028 7.2426 15 6 1.2517 -0.6611 4.8218 16 1 0.2524 -1.0213 4.5773 17 6 1.1997 0.8449 5.0870 18 7 2.0183 -0.6905 -1.1963 19 6 1.6644 -2.0931 -1.4282 20 6 2.8055 -0.0249 -2.0977 21 1 3.3650 0.8451 -1.7870 22 6 2.8846 -0.4685 -3.4106 23 7 2.0093 -1.3406 -3.8644 24 14 4.2329 0.1723 -4.5334 25 1 5.4253 -0.7064 -4.4264 26 1 3.7471 0.1788 -5.9366 27 1 4.5983 1.5539 -4.1297 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.1495 0.5388 2.5436 32 1 4.2707 -0.6331 3.1596 33 1 3.5611 0.6383 4.1835 34 1 5.1078 -0.7949 5.4882 35 1 4.1455 -2.2279 5.0547 36 1 3.1274 0.1972 6.6038 37 1 3.5277 -1.3894 7.3049 38 1 -0.1810 -1.4637 6.9980 39 1 1.1817 -1.6164 8.1326 40 1 0.7809 -0.0300 7.4319 41 1 0.8358 1.3582 4.1969 42 1 0.5272 1.0438 5.9212 43 1 2.1988 1.2053 5.3317 44 1 0.7905 -2.1447 -2.0776 45 1 2.5011 -2.6051 -1.9036 46 1 1.4384 -2.5730 -0.4761 47 1 2.0644 -1.6503 -4.7820 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249801253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:10 Heat of formation + Delta-G solvation = -35.981124 kcal Electronic energy + Delta-G solvation = -23771.704698 eV Core-core repulsion = 20568.310325 eV Total energy + Delta-G solvation = -3203.394374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.21464 -38.50430 -35.36878 -34.10257 -32.70132 -32.04762 -30.46699 -28.90940 -27.27836 -25.91300 -25.81366 -24.08169 -22.49304 -21.84368 -20.66942 -19.37141 -18.46490 -16.84359 -16.42558 -15.92185 -15.40781 -14.83561 -14.70774 -14.56243 -14.10040 -13.81625 -13.61382 -13.29247 -12.90983 -12.72259 -12.61782 -12.40466 -12.26598 -12.10517 -11.70653 -11.60413 -11.48127 -11.26023 -11.17351 -10.84078 -10.78541 -10.72025 -10.53588 -10.50066 -10.27167 -10.18346 -10.16320 -9.96376 -9.79960 -8.94919 -8.54642 -8.43813 -6.69303 -5.65627 -3.11926 3.42761 3.43943 3.49480 3.50135 3.65379 4.49659 4.54830 4.57907 4.66790 4.99239 5.04582 5.16166 5.21297 5.30397 5.33476 5.44193 5.48626 5.51709 5.54578 5.59410 5.61801 5.70867 5.76440 5.81654 5.87336 5.97835 5.98748 6.00183 6.06910 6.14385 6.17606 6.24768 6.29458 6.35300 6.48932 6.60239 6.89110 6.96163 7.07129 7.59754 7.81770 7.90447 8.06046 8.44587 8.98976 9.29504 9.91451 10.40385 11.38374 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031162 B = 0.003869 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.304034 B = 7236.176137 C = 7566.739805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.158 3.842 3 H 0.086 0.914 4 C 0.492 3.508 5 O -0.526 6.526 6 N -0.739 5.739 7 C 0.152 3.848 8 H 0.081 0.919 9 C -0.130 4.130 10 C -0.117 4.117 11 C -0.116 4.116 12 C -0.085 4.085 13 H 0.071 0.929 14 C -0.148 4.148 15 C -0.092 4.092 16 H 0.074 0.926 17 C -0.154 4.154 18 N -0.573 5.573 19 C 0.171 3.829 20 C -0.257 4.257 21 H 0.067 0.933 22 C 0.005 3.995 23 N -0.903 5.903 24 Si 0.906 3.094 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.280 1.280 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.393 0.607 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.026 0.974 45 H 0.037 0.963 46 H 0.007 0.993 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 3.518 21.688 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.104 0.896 4 C 0.277 3.723 5 O -0.400 6.400 6 N -0.394 5.394 7 C 0.046 3.954 8 H 0.099 0.901 9 C -0.169 4.169 10 C -0.155 4.155 11 C -0.153 4.153 12 C -0.104 4.104 13 H 0.089 0.911 14 C -0.205 4.205 15 C -0.111 4.111 16 H 0.092 0.908 17 C -0.211 4.211 18 N -0.293 5.293 19 C 0.026 3.974 20 C -0.386 4.386 21 H 0.084 0.916 22 C -0.194 4.194 23 N -0.547 5.547 24 Si 0.736 3.264 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.205 1.205 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.227 0.773 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.056 0.944 46 H 0.026 0.974 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.581 2.684 21.344 21.666 hybrid contribution 0.497 0.604 -0.618 0.997 sum -2.085 3.289 20.726 21.089 Atomic orbital electron populations 1.22225 0.96453 1.01731 1.00868 1.20250 0.93313 0.95989 0.85997 0.89604 1.22716 0.79617 0.85075 0.84849 1.90622 1.36802 1.26101 1.86446 1.46467 1.54976 1.32488 1.05465 1.20799 0.92506 0.97893 0.84174 0.90058 1.21953 0.97033 1.00094 0.97836 1.21485 0.98441 1.00883 0.94661 1.21654 0.94514 1.01309 0.97828 1.21092 0.94948 1.00001 0.94319 0.91095 1.21875 0.99168 1.01782 0.97668 1.21365 0.99128 0.96316 0.94296 0.90805 1.22006 1.02310 0.95364 1.01393 1.43625 1.57883 1.08415 1.19348 1.20710 0.99199 0.82880 0.94593 1.19196 1.19184 1.11144 0.89111 0.91555 1.24961 0.98351 0.99569 0.96492 1.70105 1.34526 1.34732 1.15371 0.86239 0.81809 0.78448 0.79920 1.21492 1.21768 1.20500 0.93923 0.91525 0.92958 0.77273 0.91382 0.91797 0.92039 0.91913 0.91667 0.92238 0.92745 0.92862 0.92350 0.92771 0.92346 0.91785 0.95553 0.94415 0.97442 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.09 37.16 0.34 -2.37 16 2 C 0.16 3.29 3.13 -69.08 -0.22 3.08 16 3 H 0.09 1.70 7.86 -51.93 -0.41 1.29 16 4 C 0.49 9.69 6.82 -10.98 -0.07 9.62 16 5 O -0.53 -12.60 14.27 5.56 0.08 -12.52 16 6 N -0.74 -10.70 4.89 -53.81 -0.26 -10.96 16 7 C 0.15 1.97 2.15 -67.93 -0.15 1.82 16 8 H 0.08 1.27 7.58 -51.93 -0.39 0.88 16 9 C -0.13 -1.63 5.22 -26.73 -0.14 -1.77 16 10 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 11 C -0.12 -0.98 4.93 -26.73 -0.13 -1.11 16 12 C -0.08 -0.73 2.49 -90.62 -0.23 -0.96 16 13 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 14 C -0.15 -1.06 8.84 37.16 0.33 -0.73 16 15 C -0.09 -0.89 2.41 -90.62 -0.22 -1.11 16 16 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 17 C -0.15 -1.28 7.97 37.16 0.30 -0.98 16 18 N -0.57 -15.12 2.58 -174.81 -0.45 -15.57 16 19 C 0.17 4.61 7.47 59.85 0.45 5.06 16 20 C -0.26 -7.32 9.58 -15.06 -0.14 -7.47 16 21 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 22 C 0.00 0.14 5.08 -17.43 -0.09 0.05 16 23 N -0.90 -27.10 10.75 55.49 0.60 -26.50 16 24 Si 0.91 22.51 29.58 -169.99 -5.03 17.48 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 H 0.04 0.58 7.56 -51.93 -0.39 0.18 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.05 0.98 7.67 -51.93 -0.40 0.58 16 31 H 0.39 4.66 6.28 -40.82 -0.26 4.40 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.74 6.43 -51.93 -0.33 0.40 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 41 H 0.05 0.44 6.50 -51.93 -0.34 0.10 16 42 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 43 H 0.06 0.54 4.81 -51.93 -0.25 0.29 16 44 H 0.03 0.74 7.33 -51.93 -0.38 0.36 16 45 H 0.04 1.11 7.36 -51.93 -0.38 0.73 16 46 H 0.01 0.18 6.44 -51.93 -0.33 -0.15 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 349.03 15.07 5.26 5.26 Total: -1.00 -32.67 349.03 -8.16 -40.83 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -8.22 Total: 0.23 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -0.13 Total: 1.75 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.12 Total: -53.03 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.52 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.48 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.67 -8.16 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249801253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.851 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds