Wall clock time and date at job start Tue Mar 31 2020 06:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47263 * 2 1 4 4 C 1.50696 * 109.47361 * 120.00124 * 2 1 3 5 5 O 1.21286 * 120.00036 * 119.99863 * 4 2 1 6 6 N 1.34778 * 119.99944 * 300.00359 * 4 2 1 7 7 C 1.46505 * 119.99849 * 180.02562 * 6 4 2 8 8 H 1.09000 * 109.47142 * 324.99470 * 7 6 4 9 9 C 1.53000 * 109.47364 * 84.99664 * 7 6 4 10 10 C 1.52995 * 109.47129 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47139 * 300.00272 * 10 9 7 12 12 C 1.53000 * 109.47333 * 59.99852 * 11 10 9 13 13 H 1.09000 * 109.47150 * 60.00262 * 12 11 10 14 14 C 1.53004 * 109.46917 * 180.02562 * 12 11 10 15 15 C 1.52995 * 109.47129 * 300.00153 * 12 11 10 16 16 H 1.09000 * 109.47193 * 300.00082 * 15 12 11 17 17 C 1.53000 * 109.47129 * 179.97438 * 15 12 11 18 18 N 1.46504 * 109.47225 * 240.00566 * 2 1 3 19 19 C 1.46503 * 119.99725 * 299.99679 * 18 2 1 20 20 C 1.36936 * 120.00365 * 120.00014 * 18 2 1 21 21 H 1.07999 * 119.99757 * 22.69541 * 20 18 2 22 22 C 1.38811 * 119.99670 * 202.69210 * 20 18 2 23 23 N 1.31615 * 120.00140 * 14.13029 * 22 20 18 24 24 Si 1.86800 * 119.99690 * 194.12242 * 22 20 18 25 25 H 1.48503 * 109.47236 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46911 * 120.00534 * 24 22 20 27 27 H 1.48503 * 109.47554 * 240.00497 * 24 22 20 28 28 H 1.09000 * 109.47305 * 59.99640 * 1 2 3 29 29 H 1.08998 * 109.47208 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47143 * 299.99982 * 1 2 3 31 31 H 0.96998 * 120.00349 * 359.97438 * 6 4 2 32 32 H 1.09000 * 109.47105 * 300.00005 * 9 7 6 33 33 H 1.08996 * 109.46677 * 59.99695 * 9 7 6 34 34 H 1.09000 * 109.47193 * 59.99918 * 10 9 7 35 35 H 1.09000 * 109.47471 * 179.97438 * 10 9 7 36 36 H 1.09000 * 109.46789 * 299.99894 * 11 10 9 37 37 H 1.08997 * 109.47395 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.46791 * 180.02562 * 14 12 11 39 39 H 1.09000 * 109.46948 * 299.99852 * 14 12 11 40 40 H 1.09000 * 109.47223 * 60.00029 * 14 12 11 41 41 H 1.08997 * 109.47094 * 299.99574 * 17 15 12 42 42 H 1.09000 * 109.47105 * 59.99914 * 17 15 12 43 43 H 1.09000 * 109.47191 * 179.97438 * 17 15 12 44 44 H 1.08998 * 109.47243 * 95.25784 * 19 18 2 45 45 H 1.08996 * 109.47306 * 215.26515 * 19 18 2 46 46 H 1.09004 * 109.47187 * 335.26537 * 19 18 2 47 47 H 0.97004 * 119.99462 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1956 -0.9403 3.6507 8 1 2.2327 -2.0131 3.4614 9 6 3.5980 -0.4343 3.9943 10 6 4.1083 -1.1548 5.2438 11 6 3.1641 -0.8754 6.4149 12 6 1.7617 -1.3815 6.0713 13 1 1.7987 -2.4543 5.8825 14 6 0.8175 -1.1014 7.2422 15 6 1.2515 -0.6610 4.8218 16 1 1.2145 0.4119 5.0106 17 6 -0.1507 -1.1674 4.4778 18 7 2.0184 -0.6905 -1.1963 19 6 1.6645 -2.0931 -1.4281 20 6 2.8056 -0.0250 -2.0976 21 1 3.3650 0.8450 -1.7869 22 6 2.8847 -0.4687 -3.4105 23 7 2.0095 -1.3406 -3.8643 24 14 4.2332 0.1719 -4.5332 25 1 5.0824 1.1352 -3.7873 26 1 5.0678 -0.9634 -5.0020 27 1 3.6218 0.8529 -5.7028 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.1493 0.5388 2.5436 32 1 4.2705 -0.6330 3.1598 33 1 3.5609 0.6384 4.1835 34 1 4.1453 -2.2277 5.0549 35 1 5.1076 -0.7947 5.4883 36 1 3.1272 0.1974 6.6037 37 1 3.5278 -1.3883 7.3052 38 1 -0.1815 -1.4624 6.9976 39 1 1.1808 -1.6145 8.1327 40 1 0.7806 -0.0285 7.4307 41 1 -0.1133 -2.2402 4.2888 42 1 -0.8235 -0.9687 5.3120 43 1 -0.5144 -0.6538 3.5879 44 1 0.7905 -2.1448 -2.0775 45 1 2.5011 -2.6051 -1.9034 46 1 1.4384 -2.5730 -0.4759 47 1 2.0646 -1.6504 -4.7819 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249801256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:13 Heat of formation + Delta-G solvation = -40.981199 kcal Electronic energy + Delta-G solvation = -23743.036750 eV Core-core repulsion = 20539.425557 eV Total energy + Delta-G solvation = -3203.611193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.02386 -38.38943 -35.36378 -34.09082 -33.14669 -32.08800 -30.50304 -28.89166 -27.08694 -25.87780 -25.62641 -24.06607 -22.32979 -21.17072 -20.67419 -20.16506 -18.95772 -16.84749 -16.33270 -15.76949 -14.90924 -14.88514 -14.66242 -14.45581 -14.30170 -13.96569 -13.63423 -13.22988 -12.90940 -12.68860 -12.52963 -12.31268 -12.20219 -11.93138 -11.87011 -11.65031 -11.49779 -11.25757 -11.11777 -10.93351 -10.78702 -10.73122 -10.59739 -10.49850 -10.38721 -10.26543 -10.10595 -9.94616 -9.80194 -8.94840 -8.53848 -8.44232 -6.69257 -5.65962 -3.12011 3.41747 3.44178 3.49209 3.51434 3.64625 4.50096 4.54500 4.58471 4.67602 4.91240 5.05247 5.26009 5.29706 5.34422 5.36327 5.42514 5.44271 5.51546 5.53751 5.59737 5.66422 5.72250 5.79984 5.81510 5.92043 5.95993 5.98263 6.06098 6.09924 6.14719 6.16084 6.25818 6.29785 6.33809 6.44676 6.60045 6.89024 6.95917 7.06886 7.59626 7.81871 7.90336 8.06155 8.44334 8.99121 9.29326 9.91365 10.40207 11.38088 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030342 B = 0.003946 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.600671 B = 7093.771784 C = 7600.336219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.158 3.842 3 H 0.086 0.914 4 C 0.493 3.507 5 O -0.526 6.526 6 N -0.738 5.738 7 C 0.152 3.848 8 H 0.082 0.918 9 C -0.129 4.129 10 C -0.117 4.117 11 C -0.114 4.114 12 C -0.084 4.084 13 H 0.071 0.929 14 C -0.148 4.148 15 C -0.091 4.091 16 H 0.072 0.928 17 C -0.148 4.148 18 N -0.573 5.573 19 C 0.171 3.829 20 C -0.256 4.256 21 H 0.067 0.933 22 C 0.005 3.995 23 N -0.902 5.902 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.290 1.290 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.393 0.607 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.026 0.974 45 H 0.037 0.963 46 H 0.007 0.993 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.532 2.838 21.459 21.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.045 3.955 3 H 0.104 0.896 4 C 0.278 3.722 5 O -0.400 6.400 6 N -0.392 5.392 7 C 0.046 3.954 8 H 0.100 0.900 9 C -0.168 4.168 10 C -0.155 4.155 11 C -0.152 4.152 12 C -0.103 4.103 13 H 0.090 0.910 14 C -0.205 4.205 15 C -0.110 4.110 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.293 5.293 19 C 0.026 3.974 20 C -0.386 4.386 21 H 0.085 0.915 22 C -0.194 4.194 23 N -0.547 5.547 24 Si 0.735 3.265 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.218 1.218 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.226 0.774 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.044 0.956 45 H 0.056 0.944 46 H 0.026 0.974 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.012 1.996 21.123 21.430 hybrid contribution 0.519 0.643 -0.616 1.031 sum -2.493 2.639 20.507 20.826 Atomic orbital electron populations 1.22224 0.96452 1.01710 1.00864 1.20249 0.93308 0.95987 0.86002 0.89614 1.22695 0.79605 0.85068 0.84798 1.90624 1.36815 1.26114 1.86426 1.46388 1.54923 1.32372 1.05484 1.20844 0.92232 0.98088 0.84209 0.89999 1.21925 0.97165 0.99839 0.97892 1.21488 0.98479 1.00893 0.94635 1.21618 0.94599 1.01079 0.97869 1.21120 0.94709 1.00251 0.94262 0.91034 1.21878 0.99490 1.01516 0.97594 1.21401 0.95061 1.00364 0.94160 0.90967 1.21876 0.95754 1.01578 1.01346 1.43630 1.57892 1.08413 1.19350 1.20705 0.99188 0.82882 0.94588 1.19227 1.19133 1.11093 0.89103 0.91534 1.24957 0.98383 0.99558 0.96502 1.70110 1.34592 1.34735 1.15273 0.86185 0.81670 0.78093 0.80563 1.20346 1.21598 1.21757 0.91557 0.92971 0.93905 0.77384 0.91270 0.92158 0.91873 0.92009 0.92040 0.92129 0.92308 0.92877 0.92783 0.92675 0.92528 0.92259 0.95570 0.94429 0.97438 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.09 37.16 0.34 -2.34 16 2 C 0.16 3.27 3.12 -69.08 -0.22 3.06 16 3 H 0.09 1.69 7.86 -51.93 -0.41 1.28 16 4 C 0.49 9.62 6.82 -10.99 -0.07 9.54 16 5 O -0.53 -12.54 14.27 5.55 0.08 -12.46 16 6 N -0.74 -10.53 4.27 -53.80 -0.23 -10.76 16 7 C 0.15 1.95 1.90 -67.93 -0.13 1.83 16 8 H 0.08 1.28 7.58 -51.93 -0.39 0.88 16 9 C -0.13 -1.63 5.49 -26.73 -0.15 -1.77 16 10 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 11 C -0.11 -0.98 5.20 -26.73 -0.14 -1.12 16 12 C -0.08 -0.73 2.25 -90.62 -0.20 -0.94 16 13 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 14 C -0.15 -1.07 8.84 37.16 0.33 -0.74 16 15 C -0.09 -0.88 1.82 -90.62 -0.17 -1.04 16 16 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 17 C -0.15 -1.42 8.68 37.16 0.32 -1.10 16 18 N -0.57 -15.07 2.58 -174.81 -0.45 -15.52 16 19 C 0.17 4.60 7.47 59.85 0.45 5.05 16 20 C -0.26 -7.29 9.58 -15.06 -0.14 -7.43 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 23 N -0.90 -27.06 10.75 55.49 0.60 -26.46 16 24 Si 0.90 22.48 29.58 -169.99 -5.03 17.45 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 0.97 7.67 -51.93 -0.40 0.57 16 30 H 0.04 0.57 7.56 -51.93 -0.39 0.18 16 31 H 0.39 4.56 7.81 -40.82 -0.32 4.24 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 43 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 44 H 0.03 0.74 7.34 -51.93 -0.38 0.36 16 45 H 0.04 1.10 7.36 -51.93 -0.38 0.72 16 46 H 0.01 0.18 6.44 -51.93 -0.33 -0.15 16 47 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -32.61 357.82 -8.35 -40.96 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -8.68 Total: -0.27 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -0.03 Total: 1.66 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.08 Total: -52.74 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.61 -8.35 -40.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249801256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.023 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds