Wall clock time and date at job start Tue Mar 31 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46847 * 2 1 4 4 C 1.50702 * 109.47118 * 240.00435 * 2 1 3 5 5 O 1.21279 * 119.99841 * 240.00160 * 4 2 1 6 6 N 1.34777 * 119.99925 * 59.99605 * 4 2 1 7 7 C 1.46510 * 119.99736 * 180.02562 * 6 4 2 8 8 H 1.09002 * 109.46769 * 324.99924 * 7 6 4 9 9 C 1.52994 * 109.47020 * 84.99939 * 7 6 4 10 10 C 1.52997 * 109.47156 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47264 * 300.00472 * 10 9 7 12 12 C 1.53001 * 109.47551 * 59.99462 * 11 10 9 13 13 H 1.09006 * 109.46626 * 59.99786 * 12 11 10 14 14 C 1.52997 * 109.47551 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.46596 * 205.00004 * 7 6 4 16 16 H 1.08997 * 109.47212 * 299.99816 * 15 7 6 17 17 C 1.52998 * 109.47152 * 60.00227 * 15 7 6 18 18 N 1.46498 * 109.47335 * 120.00282 * 2 1 3 19 19 C 1.46497 * 119.99931 * 59.99939 * 18 2 1 20 20 C 1.36939 * 119.99958 * 240.00266 * 18 2 1 21 21 H 1.08001 * 119.99410 * 339.51811 * 20 18 2 22 22 C 1.38803 * 119.99906 * 159.24456 * 20 18 2 23 23 N 1.31614 * 120.00231 * 345.38203 * 22 20 18 24 24 Si 1.86803 * 119.99927 * 165.37939 * 22 20 18 25 25 H 1.48492 * 109.47267 * 94.73381 * 24 22 20 26 26 H 1.48496 * 109.47263 * 214.73804 * 24 22 20 27 27 H 1.48504 * 109.46784 * 334.73179 * 24 22 20 28 28 H 1.09002 * 109.46847 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47072 * 299.99576 * 1 2 3 30 30 H 1.09004 * 109.47483 * 59.99907 * 1 2 3 31 31 H 0.97003 * 120.00063 * 0.02562 * 6 4 2 32 32 H 1.08998 * 109.47709 * 299.99996 * 9 7 6 33 33 H 1.09002 * 109.47362 * 60.00348 * 9 7 6 34 34 H 1.08997 * 109.46872 * 60.00006 * 10 9 7 35 35 H 1.09003 * 109.47351 * 179.97438 * 10 9 7 36 36 H 1.09003 * 109.47322 * 179.97438 * 11 10 9 37 37 H 1.09002 * 109.47079 * 299.99240 * 11 10 9 38 38 H 1.08997 * 109.46796 * 60.00118 * 14 12 11 39 39 H 1.08996 * 109.47297 * 180.02562 * 14 12 11 40 40 H 1.09003 * 109.47322 * 300.00226 * 14 12 11 41 41 H 1.08997 * 109.47398 * 59.99702 * 17 15 7 42 42 H 1.09005 * 109.46998 * 179.97438 * 17 15 7 43 43 H 1.08991 * 109.47297 * 299.99282 * 17 15 7 44 44 H 1.08999 * 109.47287 * 264.79402 * 19 18 2 45 45 H 1.08997 * 109.47256 * 24.79675 * 19 18 2 46 46 H 1.09000 * 109.46748 * 144.79359 * 19 18 2 47 47 H 0.97004 * 120.00502 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1946 -0.9407 -3.6509 8 1 3.1937 -1.3332 -3.4616 9 6 1.2501 -2.0943 -3.9944 10 6 1.7593 -2.8154 -5.2440 11 6 1.8105 -1.8321 -6.4150 12 6 2.7550 -0.6785 -6.0715 13 1 3.7542 -1.0710 -5.8826 14 6 2.8067 0.3045 -7.2428 15 6 2.2462 0.0424 -4.8221 16 1 1.2471 0.4348 -5.0113 17 6 3.1907 1.1959 -4.4785 18 7 2.0184 -0.6906 1.1961 19 6 1.6645 -2.0932 1.4279 20 6 2.8056 -0.0251 2.0975 21 1 3.3368 0.8656 1.7962 22 6 2.9164 -0.4922 3.3999 23 7 2.0626 -1.3851 3.8537 24 14 4.2774 0.1464 4.5086 25 1 3.7615 1.2730 5.3270 26 1 4.7396 -0.9446 5.4037 27 1 5.4132 0.6185 3.6764 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.1493 0.5391 -2.5435 32 1 1.2133 -2.7946 -3.1600 33 1 0.2510 -1.7018 -4.1837 34 1 2.7585 -3.2078 -5.0552 35 1 1.0866 -3.6376 -5.4885 36 1 2.1737 -2.3458 -7.3052 37 1 0.8113 -1.4397 -6.6039 38 1 1.8076 0.6970 -7.4320 39 1 3.4799 1.1261 -6.9982 40 1 3.1698 -0.2096 -8.1328 41 1 4.1898 0.8034 -4.2893 42 1 3.2278 1.8961 -5.3131 43 1 2.8277 1.7099 -3.5885 44 1 0.7900 -2.1449 2.0765 45 1 1.4394 -2.5733 0.4756 46 1 2.5008 -2.6050 1.9040 47 1 2.1402 -1.7119 4.7637 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249801258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:16 Heat of formation + Delta-G solvation = -40.128518 kcal Electronic energy + Delta-G solvation = -23737.557744 eV Core-core repulsion = 20533.983525 eV Total energy + Delta-G solvation = -3203.574218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.02372 -38.39167 -35.36867 -34.08953 -33.14671 -32.09847 -30.50089 -28.86531 -27.11475 -25.87560 -25.63300 -24.04080 -22.33590 -21.17390 -20.68116 -20.15462 -18.96159 -16.86995 -16.30282 -15.77340 -14.95816 -14.79248 -14.58612 -14.57145 -14.34353 -13.92994 -13.63902 -13.25466 -12.87639 -12.63674 -12.55651 -12.34403 -12.19898 -11.93562 -11.86229 -11.60603 -11.55624 -11.24589 -11.10705 -10.93322 -10.79260 -10.70944 -10.57603 -10.55450 -10.36767 -10.26042 -10.10587 -9.97108 -9.78540 -8.94191 -8.54202 -8.43122 -6.71257 -5.65647 -3.09633 3.41771 3.44099 3.49237 3.52222 3.64837 4.50025 4.54803 4.58607 4.67789 4.91274 5.04779 5.25537 5.29797 5.34075 5.36619 5.42958 5.44252 5.51508 5.53696 5.59495 5.67068 5.73684 5.80043 5.81895 5.92136 5.95040 5.97526 6.05898 6.08709 6.15565 6.15994 6.26612 6.29418 6.31951 6.44866 6.59384 6.88434 6.96021 7.07058 7.61341 7.80662 7.91529 8.06365 8.43810 8.99322 9.29623 9.92044 10.39923 11.38744 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028813 B = 0.003927 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.559222 B = 7128.375135 C = 7461.319108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.158 3.842 3 H 0.086 0.914 4 C 0.493 3.507 5 O -0.526 6.526 6 N -0.738 5.738 7 C 0.151 3.849 8 H 0.082 0.918 9 C -0.128 4.128 10 C -0.117 4.117 11 C -0.114 4.114 12 C -0.085 4.085 13 H 0.071 0.929 14 C -0.147 4.147 15 C -0.091 4.091 16 H 0.072 0.928 17 C -0.149 4.149 18 N -0.573 5.573 19 C 0.172 3.828 20 C -0.256 4.256 21 H 0.067 0.933 22 C 0.004 3.996 23 N -0.904 5.904 24 Si 0.905 3.095 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.393 0.607 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.025 0.975 45 H 0.006 0.994 46 H 0.039 0.961 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.012 3.330 -21.440 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.045 3.955 3 H 0.104 0.896 4 C 0.278 3.722 5 O -0.399 6.399 6 N -0.392 5.392 7 C 0.046 3.954 8 H 0.100 0.900 9 C -0.167 4.167 10 C -0.155 4.155 11 C -0.151 4.151 12 C -0.104 4.104 13 H 0.090 0.910 14 C -0.205 4.205 15 C -0.110 4.110 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.293 5.293 19 C 0.027 3.973 20 C -0.385 4.385 21 H 0.085 0.915 22 C -0.195 4.195 23 N -0.548 5.548 24 Si 0.735 3.265 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.205 1.205 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.226 0.774 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.043 0.957 45 H 0.025 0.975 46 H 0.058 0.942 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.471 2.487 -21.101 21.390 hybrid contribution 0.432 0.598 0.606 0.955 sum -2.039 3.085 -20.495 20.826 Atomic orbital electron populations 1.22228 0.96455 1.01726 1.00872 1.20240 0.93306 0.95984 0.86002 0.89633 1.22701 0.79544 0.85148 0.84790 1.90623 1.36827 1.26069 1.86420 1.46392 1.55021 1.32280 1.05482 1.20847 0.98557 0.91796 0.84213 0.89975 1.21916 0.98979 0.97978 0.97843 1.21491 1.01611 0.97769 0.94645 1.21618 0.99573 0.96089 0.97866 1.21115 0.99601 0.95387 0.94265 0.91034 1.21875 1.01783 0.99227 0.97587 1.21390 0.99856 0.95562 0.94159 0.90977 1.21877 0.99624 0.97753 1.01331 1.43643 1.57893 1.08507 1.19294 1.20703 0.99218 0.82846 0.94485 1.19200 1.20046 1.09459 0.89831 0.91488 1.24913 0.98578 0.99504 0.96467 1.70113 1.35309 1.33569 1.15837 0.86244 0.82030 0.77813 0.80461 1.21545 1.21573 1.20530 0.92969 0.91572 0.93871 0.77390 0.91344 0.92158 0.91865 0.92007 0.92130 0.92036 0.92788 0.92307 0.92875 0.92654 0.92515 0.92283 0.95714 0.97501 0.94194 0.93815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.09 37.16 0.34 -2.35 16 2 C 0.16 3.27 3.12 -69.08 -0.22 3.06 16 3 H 0.09 1.68 7.85 -51.93 -0.41 1.27 16 4 C 0.49 9.62 6.82 -10.98 -0.07 9.55 16 5 O -0.53 -12.55 14.27 5.56 0.08 -12.47 16 6 N -0.74 -10.53 4.28 -53.80 -0.23 -10.76 16 7 C 0.15 1.95 1.90 -67.93 -0.13 1.82 16 8 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 9 C -0.13 -1.58 5.49 -26.74 -0.15 -1.73 16 10 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 11 C -0.11 -0.97 5.20 -26.73 -0.14 -1.11 16 12 C -0.08 -0.74 2.25 -90.64 -0.20 -0.95 16 13 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 14 C -0.15 -1.08 8.84 37.16 0.33 -0.75 16 15 C -0.09 -0.88 1.82 -90.64 -0.17 -1.05 16 16 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 17 C -0.15 -1.46 8.68 37.16 0.32 -1.14 16 18 N -0.57 -15.09 2.59 -174.82 -0.45 -15.55 16 19 C 0.17 4.64 7.47 59.85 0.45 5.08 16 20 C -0.26 -7.28 9.61 -15.06 -0.14 -7.43 16 21 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 22 C 0.00 0.11 5.07 -17.44 -0.09 0.02 16 23 N -0.90 -27.12 10.67 55.49 0.59 -26.53 16 24 Si 0.90 22.48 29.58 -169.99 -5.03 17.45 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 H 0.05 0.97 7.67 -51.93 -0.40 0.57 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.04 0.58 7.57 -51.93 -0.39 0.18 16 31 H 0.39 4.55 7.81 -40.82 -0.32 4.23 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 43 H 0.06 0.61 7.44 -51.93 -0.39 0.22 16 44 H 0.02 0.70 7.38 -51.93 -0.38 0.31 16 45 H 0.01 0.17 6.43 -51.93 -0.33 -0.17 16 46 H 0.04 1.18 7.24 -51.93 -0.38 0.80 16 47 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -32.64 357.65 -8.36 -40.99 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -8.68 Total: -0.21 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -0.03 Total: 1.68 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.09 Total: -52.83 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.08 Total: -12.47 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.64 -8.36 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249801258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.866 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds