Wall clock time and date at job start Tue Mar 31 2020 06:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47578 * 2 1 4 4 C 1.50703 * 109.47483 * 239.99397 * 2 1 3 5 5 O 1.21283 * 120.00317 * 240.00155 * 4 2 1 6 6 N 1.34777 * 119.99512 * 60.00351 * 4 2 1 7 7 C 1.46494 * 120.00353 * 359.97438 * 6 4 2 8 8 C 1.46506 * 119.99692 * 180.02562 * 6 4 2 9 9 C 1.50700 * 109.46957 * 269.99667 * 8 6 4 10 10 H 1.08002 * 119.99770 * 0.02562 * 9 8 6 11 11 C 1.37871 * 120.00083 * 180.02562 * 9 8 6 12 12 N 1.31514 * 120.00147 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00278 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47228 * 179.97438 * 13 11 9 15 15 H 1.48501 * 109.46793 * 300.00001 * 13 11 9 16 16 H 1.48500 * 109.47000 * 60.00094 * 13 11 9 17 17 N 1.46906 * 109.47293 * 119.99552 * 2 1 3 18 18 C 1.44296 * 111.00437 * 176.04577 * 17 2 1 19 19 C 1.53978 * 108.32000 * 221.35106 * 18 17 2 20 20 C 1.45879 * 112.66537 * 278.60615 * 19 18 17 21 21 C 1.54515 * 111.67250 * 61.49195 * 20 19 18 22 22 H 1.09001 * 109.57181 * 42.58344 * 21 20 19 23 23 C 1.53004 * 109.56773 * 162.94571 * 21 20 19 24 24 C 1.50530 * 108.86628 * 282.76130 * 21 20 19 25 25 C 1.47941 * 110.99685 * 303.46890 * 17 2 1 26 26 H 1.08997 * 109.47078 * 300.00923 * 1 2 3 27 27 H 1.09002 * 109.46534 * 60.00279 * 1 2 3 28 28 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47692 * 270.00267 * 7 6 4 30 30 H 1.09005 * 109.47406 * 30.00419 * 7 6 4 31 31 H 1.09005 * 109.47323 * 150.00309 * 7 6 4 32 32 H 1.08994 * 109.47197 * 150.00056 * 8 6 4 33 33 H 1.08998 * 109.47414 * 29.99736 * 8 6 4 34 34 H 0.97005 * 119.99661 * 359.97438 * 12 11 9 35 35 H 1.08997 * 109.69516 * 341.05844 * 18 17 2 36 36 H 1.09002 * 109.69459 * 101.60669 * 18 17 2 37 37 H 1.09006 * 108.84336 * 39.42317 * 19 18 17 38 38 H 1.08995 * 108.84760 * 157.88290 * 19 18 17 39 39 H 1.08997 * 109.03976 * 182.06560 * 20 19 18 40 40 H 1.09001 * 109.03526 * 301.00378 * 20 19 18 41 41 H 1.09000 * 109.47223 * 60.00769 * 23 21 20 42 42 H 1.09006 * 109.46916 * 179.97438 * 23 21 20 43 43 H 1.08989 * 109.47570 * 300.00212 * 23 21 20 44 44 H 1.09005 * 108.79134 * 212.64725 * 24 21 20 45 45 H 1.09003 * 108.79369 * 330.97440 * 24 21 20 46 46 H 1.09001 * 108.71150 * 313.17021 * 25 17 2 47 47 H 1.09004 * 108.71688 * 71.18512 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 0.8642 0.9407 -2.5891 8 6 2.1948 -0.9411 -3.6507 9 6 3.5225 -0.3582 -4.0610 10 1 3.9593 0.4463 -3.4879 11 6 4.1795 -0.8518 -5.1681 12 7 3.6473 -1.8310 -5.8663 13 14 5.8256 -0.1297 -5.6764 14 1 6.3202 -0.8300 -6.8889 15 1 5.6618 1.3164 -5.9716 16 1 6.8038 -0.3018 -4.5724 17 7 2.0197 -0.6924 1.1995 18 6 3.4591 -0.7927 1.1874 19 6 3.8507 -2.1965 1.6842 20 6 3.8411 -2.3009 3.1392 21 6 2.4346 -2.0348 3.7211 22 1 1.6855 -2.5390 3.1107 23 6 2.3666 -2.5589 5.1570 24 6 2.1771 -0.5517 3.7129 25 6 1.4783 -0.0714 2.4283 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.1837 0.6425 -2.6226 30 1 1.0273 1.5995 -1.7361 31 1 1.1219 1.4662 -3.5086 32 1 1.4769 -0.8156 -4.4611 33 1 2.3155 -2.0024 -3.4334 34 1 2.7927 -2.2062 -5.6021 35 1 3.8290 -0.6457 0.1727 36 1 3.8855 -0.0368 1.8469 37 1 3.1491 -2.9234 1.2745 38 1 4.8516 -2.4316 1.3224 39 1 4.1610 -3.3026 3.4260 40 1 4.5393 -1.5730 3.5525 41 1 3.1131 -2.0487 5.7658 42 1 1.3740 -2.3700 5.5661 43 1 2.5642 -3.6307 5.1624 44 1 1.5508 -0.2993 4.5686 45 1 3.1290 -0.0294 3.8090 46 1 1.5910 1.0101 2.3524 47 1 0.4160 -0.3054 2.4997 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249827614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:41 Heat of formation + Delta-G solvation = -32.895428 kcal Electronic energy + Delta-G solvation = -24025.999666 eV Core-core repulsion = 20822.739099 eV Total energy + Delta-G solvation = -3203.260568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.09880 -38.39787 -35.50148 -34.95188 -33.00136 -32.50908 -30.93634 -28.31444 -27.33938 -26.02734 -25.07037 -24.21949 -23.08175 -21.91830 -20.14560 -19.49870 -18.54733 -16.98799 -16.59215 -16.00866 -15.58908 -15.03538 -14.55006 -14.37338 -14.06570 -13.77039 -13.68984 -13.48016 -13.17671 -13.06479 -12.72168 -12.47739 -12.21880 -12.14307 -12.02609 -11.85614 -11.44728 -11.36928 -11.18293 -10.98363 -10.91541 -10.84114 -10.57420 -10.51829 -10.31864 -10.25906 -10.10789 -10.07588 -9.08726 -8.74694 -8.38147 -7.95213 -7.58396 -6.37761 -4.09897 3.39281 3.43221 3.46894 3.62085 3.65787 4.19539 4.53954 4.67480 4.83741 4.90336 4.95177 5.19063 5.24081 5.25603 5.33992 5.37441 5.42319 5.47572 5.55085 5.62978 5.66425 5.71018 5.74252 5.78952 5.82357 5.87713 5.92883 5.98418 6.01821 6.10023 6.17751 6.29298 6.36192 6.39436 6.47365 6.59176 6.80994 6.82569 7.12459 7.27606 7.43364 7.50965 8.04818 8.32141 8.43680 8.78656 9.06868 9.59991 10.99434 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.004533 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.953563 B = 6175.655259 C = 6919.580934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.069 3.931 3 H 0.056 0.944 4 C 0.509 3.491 5 O -0.519 6.519 6 N -0.599 5.599 7 C 0.083 3.917 8 C 0.238 3.762 9 C -0.606 4.606 10 H 0.049 0.951 11 C 0.020 3.980 12 N -0.909 5.909 13 Si 1.071 2.929 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.288 1.288 17 N -0.525 5.525 18 C 0.067 3.933 19 C -0.105 4.105 20 C -0.107 4.107 21 C -0.086 4.086 22 H 0.081 0.919 23 C -0.145 4.145 24 C -0.112 4.112 25 C 0.064 3.936 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.020 0.980 33 H 0.034 0.966 34 H 0.268 0.732 35 H 0.085 0.915 36 H 0.027 0.973 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.027 0.973 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.295 5.126 18.339 20.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.043 4.043 3 H 0.073 0.927 4 C 0.295 3.705 5 O -0.395 6.395 6 N -0.332 5.332 7 C -0.061 4.061 8 C 0.118 3.882 9 C -0.645 4.645 10 H 0.068 0.932 11 C -0.184 4.184 12 N -0.545 5.545 13 Si 0.899 3.101 14 H -0.206 1.206 15 H -0.215 1.215 16 H -0.214 1.214 17 N -0.251 5.251 18 C -0.061 4.061 19 C -0.143 4.143 20 C -0.144 4.144 21 C -0.105 4.105 22 H 0.099 0.901 23 C -0.203 4.203 24 C -0.150 4.150 25 C -0.063 4.063 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.045 0.955 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.046 0.954 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.865 4.019 17.242 18.360 hybrid contribution -0.951 1.162 1.157 1.896 sum -5.817 5.181 18.399 19.980 Atomic orbital electron populations 1.22065 0.92903 1.03408 1.02636 1.21550 0.96731 0.95724 0.90265 0.92664 1.20096 0.81088 0.85317 0.83991 1.90663 1.36980 1.26106 1.85775 1.47917 1.50061 1.28268 1.06963 1.21777 0.93734 0.88157 1.02440 1.19309 0.94599 0.93511 0.80801 1.22235 1.05788 1.21795 1.14644 0.93223 1.25791 1.03925 0.95322 0.93384 1.70802 1.19460 1.23900 1.40358 0.83520 0.74876 0.75405 0.76337 1.20635 1.21497 1.21435 1.60439 1.11208 1.53469 0.99983 1.21846 0.86215 0.96214 1.01787 1.20290 1.01379 0.98089 0.94561 1.20660 0.95975 1.00876 0.96904 1.20887 0.98263 0.95456 0.95881 0.90055 1.21897 1.01058 1.00811 0.96487 1.21439 1.00516 0.96673 0.96325 1.22397 0.99370 0.95553 0.88976 0.92098 0.90696 0.91441 0.93404 0.92335 0.90973 0.96203 0.94819 0.92209 0.89666 0.95501 0.90613 0.92681 0.92651 0.93213 0.93159 0.93044 0.92852 0.91670 0.92497 0.95439 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.49 37.15 0.32 -1.61 16 2 C 0.07 1.08 1.62 -68.86 -0.11 0.97 16 3 H 0.06 0.83 7.40 -51.93 -0.38 0.45 16 4 C 0.51 10.68 6.38 -10.98 -0.07 10.61 16 5 O -0.52 -12.90 13.46 5.56 0.07 -12.82 16 6 N -0.60 -12.81 2.86 -182.95 -0.52 -13.33 16 7 C 0.08 1.33 8.80 59.84 0.53 1.85 16 8 C 0.24 6.22 4.47 -5.19 -0.02 6.20 16 9 C -0.61 -17.43 9.39 -34.44 -0.32 -17.75 16 10 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 11 C 0.02 0.58 5.46 -17.82 -0.10 0.49 16 12 N -0.91 -27.89 13.65 55.43 0.76 -27.14 16 13 Si 1.07 25.73 29.90 -169.99 -5.08 20.64 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 N -0.53 -7.96 3.74 -228.04 -0.85 -8.82 16 18 C 0.07 1.10 4.40 -4.71 -0.02 1.08 16 19 C -0.11 -1.64 5.12 -29.59 -0.15 -1.79 16 20 C -0.11 -1.32 4.74 -29.31 -0.14 -1.46 16 21 C -0.09 -0.96 2.43 -91.06 -0.22 -1.19 16 22 H 0.08 1.05 7.79 -51.93 -0.40 0.65 16 23 C -0.15 -1.33 8.91 37.16 0.33 -1.00 16 24 C -0.11 -1.17 4.83 -27.48 -0.13 -1.31 16 25 C 0.06 0.75 4.58 -2.77 -0.01 0.74 16 26 H 0.06 0.63 6.60 -51.93 -0.34 0.28 16 27 H 0.07 0.88 4.53 -51.93 -0.24 0.64 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.65 6.95 -51.93 -0.36 0.29 16 30 H 0.06 0.78 6.01 -51.93 -0.31 0.47 16 31 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 32 H 0.02 0.52 7.94 -51.93 -0.41 0.11 16 33 H 0.03 0.99 7.29 -51.93 -0.38 0.61 16 34 H 0.27 8.16 7.22 -40.82 -0.29 7.87 16 35 H 0.09 1.72 5.43 -51.93 -0.28 1.43 16 36 H 0.03 0.40 6.79 -51.93 -0.35 0.05 16 37 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.65 8.02 -51.93 -0.42 0.23 16 40 H 0.05 0.58 7.58 -51.93 -0.39 0.19 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.43 8.10 -51.93 -0.42 0.00 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.57 7.70 -51.93 -0.40 0.17 16 45 H 0.06 0.61 6.65 -51.93 -0.35 0.27 16 46 H 0.03 0.31 8.02 -51.93 -0.42 -0.11 16 47 H 0.07 0.78 6.90 -51.93 -0.36 0.42 16 LS Contribution 348.01 15.07 5.24 5.24 Total: -1.00 -32.60 348.01 -8.76 -41.36 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -8.25 Total: -0.99 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.13 Total: -4.16 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.62 Total: -49.28 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.07 Total: -12.82 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.60 -8.76 -41.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249827614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.462 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds