Wall clock time and date at job start Tue Mar 31 2020 06:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46833 * 2 1 4 4 C 1.50702 * 109.47143 * 240.00854 * 2 1 3 5 5 O 1.21283 * 119.99465 * 258.51874 * 4 2 1 6 6 N 1.34771 * 120.00318 * 78.25094 * 4 2 1 7 7 C 1.46500 * 119.99959 * 355.86910 * 6 4 2 8 8 C 1.46501 * 119.99796 * 175.87111 * 6 4 2 9 9 C 1.50699 * 109.47125 * 89.99916 * 8 6 4 10 10 H 1.07995 * 119.99901 * 359.97438 * 9 8 6 11 11 C 1.37877 * 120.00142 * 179.97438 * 9 8 6 12 12 N 1.31525 * 119.99904 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00278 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46999 * 90.00284 * 13 11 9 15 15 H 1.48496 * 109.47505 * 209.99965 * 13 11 9 16 16 H 1.48497 * 109.47519 * 330.00702 * 13 11 9 17 17 N 1.46894 * 109.47195 * 120.00177 * 2 1 3 18 18 C 1.47804 * 110.99813 * 180.97928 * 17 2 1 19 19 C 1.45866 * 112.91652 * 153.86747 * 18 17 2 20 20 C 1.54513 * 111.59027 * 61.32905 * 19 18 17 21 21 C 1.50465 * 108.85103 * 282.80631 * 20 19 18 22 22 H 1.08996 * 108.76762 * 331.23664 * 21 20 19 23 23 C 1.52998 * 108.76767 * 213.06822 * 21 20 19 24 24 C 1.54296 * 113.03228 * 92.15665 * 21 20 19 25 25 C 1.44266 * 110.99829 * 59.00084 * 17 2 1 26 26 H 1.09006 * 109.47286 * 51.72643 * 1 2 3 27 27 H 1.09000 * 109.46797 * 171.72526 * 1 2 3 28 28 H 1.08993 * 109.47515 * 291.72398 * 1 2 3 29 29 H 1.08994 * 109.47412 * 90.72410 * 7 6 4 30 30 H 1.08999 * 109.46973 * 210.72507 * 7 6 4 31 31 H 1.09001 * 109.47156 * 330.72084 * 7 6 4 32 32 H 1.09001 * 109.46925 * 209.99617 * 8 6 4 33 33 H 1.08993 * 109.47507 * 329.99493 * 8 6 4 34 34 H 0.96993 * 119.99636 * 179.97438 * 12 11 9 35 35 H 1.09001 * 108.79724 * 274.75601 * 18 17 2 36 36 H 1.08998 * 108.79436 * 33.09836 * 18 17 2 37 37 H 1.09003 * 109.05726 * 181.87098 * 19 18 17 38 38 H 1.08997 * 109.05876 * 300.78365 * 19 18 17 39 39 H 1.08999 * 109.57181 * 42.61745 * 20 19 18 40 40 H 1.08996 * 109.57089 * 162.99595 * 20 19 18 41 41 H 1.09004 * 109.47199 * 60.00594 * 23 21 20 42 42 H 1.08998 * 109.47294 * 180.02562 * 23 21 20 43 43 H 1.09004 * 109.47427 * 300.00107 * 23 21 20 44 44 H 1.08997 * 108.91914 * 79.01922 * 24 21 20 45 45 H 1.08996 * 108.91665 * 197.67228 * 24 21 20 46 46 H 1.08997 * 108.98497 * 339.95122 * 25 17 2 47 47 H 1.08998 * 108.98097 * 98.66535 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 8 2.4315 -1.8527 -1.1508 6 7 2.0329 -0.0778 -2.4207 7 6 1.4621 1.2665 -2.5361 8 6 2.6043 -0.7346 -3.5989 9 6 1.5315 -1.5244 -4.3035 10 1 0.5249 -1.5362 -3.9125 11 6 1.8351 -2.2318 -5.4474 12 7 3.0612 -2.2178 -5.9233 13 14 0.5056 -3.2113 -6.3204 14 1 -0.1623 -2.3498 -7.3289 15 1 1.1176 -4.3826 -6.9975 16 1 -0.4957 -3.6800 -5.3289 17 7 2.0196 -0.6925 1.1994 18 6 3.4970 -0.6918 1.2453 19 6 4.0231 -0.7901 2.6022 20 6 3.5887 -2.1056 3.2865 21 6 2.1564 -1.9739 3.7282 22 1 1.9488 -0.9244 3.9367 23 6 1.9629 -2.7761 5.0166 24 6 1.1504 -2.4791 2.6730 25 6 1.5380 -2.0516 1.2444 26 1 -0.3634 0.6366 -0.8068 27 1 -0.3633 -1.0170 -0.1479 28 1 -0.3634 0.3803 0.9546 29 1 2.2409 2.0083 -2.3599 30 1 1.0508 1.4019 -3.5364 31 1 0.6696 1.3893 -1.7978 32 1 3.0048 0.0193 -4.2767 33 1 3.4048 -1.4059 -3.2883 34 1 3.2748 -2.7158 -6.7277 35 1 3.8669 -1.5359 0.6632 36 1 3.8619 0.2313 0.7950 37 1 5.1118 -0.7507 2.5656 38 1 3.6572 0.0533 3.1878 39 1 3.6788 -2.9314 2.5807 40 1 4.2224 -2.2928 4.1533 41 1 2.6253 -2.3870 5.7899 42 1 0.9278 -2.6889 5.3469 43 1 2.1975 -3.8242 4.8308 44 1 1.1086 -3.5674 2.7171 45 1 0.1638 -2.0781 2.9050 46 1 0.6642 -2.1398 0.5988 47 1 2.3184 -2.7168 0.8749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249827616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:44 Heat of formation + Delta-G solvation = -34.372136 kcal Electronic energy + Delta-G solvation = -24105.768470 eV Core-core repulsion = 20902.443867 eV Total energy + Delta-G solvation = -3203.324603 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.28745 -38.17308 -35.38860 -34.67976 -32.97647 -32.57459 -30.72725 -28.12959 -27.69710 -25.97011 -25.43924 -24.06116 -23.04353 -21.71639 -20.55369 -19.34726 -18.14855 -16.56920 -16.51262 -16.02627 -15.36742 -15.03177 -14.74374 -14.56250 -14.27309 -14.01365 -13.68606 -13.15289 -12.91364 -12.74723 -12.47443 -12.44084 -12.24996 -12.07303 -11.95848 -11.83098 -11.38626 -11.32640 -11.16159 -10.99415 -10.84137 -10.61283 -10.57116 -10.44677 -10.31146 -10.21471 -10.12078 -9.98540 -9.63728 -9.39531 -8.44766 -7.79973 -7.63303 -6.05304 -4.09872 3.28622 3.34592 3.36748 3.42155 3.96587 4.08203 4.43815 4.78081 4.93466 5.02475 5.11328 5.22065 5.26512 5.29675 5.32343 5.44304 5.48398 5.55614 5.56464 5.67180 5.75677 5.85679 5.90761 5.91548 5.97014 5.98672 6.00213 6.10956 6.13879 6.16222 6.23982 6.32165 6.38977 6.43841 6.45179 6.57597 6.65242 7.01862 7.25627 7.38766 7.41956 7.54233 7.91009 8.22737 8.41606 8.89190 9.07916 9.55198 11.02795 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.004377 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.037309 B = 6395.487172 C = 6630.029855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.061 3.939 3 H 0.097 0.903 4 C 0.477 3.523 5 O -0.539 6.539 6 N -0.600 5.600 7 C 0.075 3.925 8 C 0.246 3.754 9 C -0.523 4.523 10 H 0.056 0.944 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.500 5.500 18 C 0.046 3.954 19 C -0.109 4.109 20 C -0.112 4.112 21 C -0.081 4.081 22 H 0.071 0.929 23 C -0.149 4.149 24 C -0.104 4.104 25 C 0.051 3.949 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.040 0.960 34 H 0.263 0.737 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.440 5.894 17.576 18.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.051 4.051 3 H 0.114 0.886 4 C 0.262 3.738 5 O -0.417 6.417 6 N -0.332 5.332 7 C -0.069 4.069 8 C 0.126 3.874 9 C -0.562 4.562 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.223 5.223 18 C -0.081 4.081 19 C -0.147 4.147 20 C -0.150 4.150 21 C -0.099 4.099 22 H 0.090 0.910 23 C -0.207 4.207 24 C -0.142 4.142 25 C -0.077 4.077 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.287 5.476 17.868 18.828 hybrid contribution -0.393 -0.888 -1.489 1.778 sum -2.680 4.587 16.379 17.219 Atomic orbital electron populations 1.21910 0.92606 1.02936 1.02597 1.21981 0.97035 0.98624 0.87484 0.88554 1.21515 0.79767 0.87294 0.85230 1.90654 1.48239 1.17312 1.85503 1.48250 1.58398 1.16341 1.10240 1.21816 0.97693 0.84234 1.03133 1.19253 0.94496 0.92745 0.80882 1.21409 0.96011 1.29670 1.09100 0.92558 1.24940 0.95608 0.96450 0.97150 1.69935 1.18373 1.42404 1.22775 0.86504 0.81726 0.79693 0.79543 1.20630 1.21085 1.19927 1.62094 1.08739 1.16938 1.34499 1.21051 0.87779 1.01847 0.97427 1.20554 0.99517 0.98093 0.96539 1.21428 0.95907 0.97815 0.99824 1.20798 0.94677 1.00270 0.94182 0.91020 1.21989 1.01044 1.00153 0.97486 1.22052 0.98269 0.99386 0.94513 1.21993 1.01210 0.89162 0.95347 0.91200 0.91869 0.91010 0.93863 0.90805 0.91735 0.95199 0.94183 0.92747 0.92706 0.92373 0.92073 0.91736 0.91970 0.92371 0.93161 0.93164 0.93100 0.92581 0.92655 0.91513 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.61 37.16 0.32 -1.58 16 2 C 0.06 0.93 1.86 -68.87 -0.13 0.80 16 3 H 0.10 1.30 7.36 -51.93 -0.38 0.92 16 4 C 0.48 9.72 6.12 -10.99 -0.07 9.65 16 5 O -0.54 -13.10 12.29 5.55 0.07 -13.03 16 6 N -0.60 -12.67 2.86 -182.96 -0.52 -13.19 16 7 C 0.08 1.19 9.89 59.85 0.59 1.78 16 8 C 0.25 6.47 5.13 -5.19 -0.03 6.44 16 9 C -0.52 -14.93 9.39 -34.44 -0.32 -15.25 16 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 13 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 17 N -0.50 -7.34 4.26 -232.94 -0.99 -8.33 16 18 C 0.05 0.68 4.15 -6.70 -0.03 0.65 16 19 C -0.11 -1.30 5.53 -29.31 -0.16 -1.46 16 20 C -0.11 -1.30 5.10 -27.20 -0.14 -1.44 16 21 C -0.08 -0.91 2.32 -91.21 -0.21 -1.12 16 22 H 0.07 0.84 7.38 -51.93 -0.38 0.46 16 23 C -0.15 -1.43 8.79 37.16 0.33 -1.10 16 24 C -0.10 -1.31 5.51 -25.49 -0.14 -1.45 16 25 C 0.05 0.80 3.38 -4.67 -0.02 0.79 16 26 H 0.07 0.86 5.78 -51.93 -0.30 0.56 16 27 H 0.06 0.94 6.28 -51.93 -0.33 0.62 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 31 H 0.06 0.84 4.43 -51.93 -0.23 0.61 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.04 1.19 7.49 -51.93 -0.39 0.80 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.05 0.97 6.16 -51.93 -0.32 0.65 16 36 H 0.06 0.84 7.73 -51.93 -0.40 0.44 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.73 7.59 -51.93 -0.39 0.33 16 39 H 0.06 0.82 7.15 -51.93 -0.37 0.45 16 40 H 0.06 0.59 7.68 -51.93 -0.40 0.19 16 41 H 0.05 0.44 8.07 -51.93 -0.42 0.02 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.69 7.98 -51.93 -0.41 0.27 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 1.13 5.19 -51.93 -0.27 0.86 16 47 H 0.06 1.11 5.47 -51.93 -0.28 0.82 16 LS Contribution 347.66 15.07 5.24 5.24 Total: -1.00 -31.76 347.66 -8.79 -40.56 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -8.20 Total: -0.52 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.10 Total: -1.65 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.78 Total: -47.61 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.07 Total: -13.03 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.76 -8.79 -40.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249827616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.187 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds