Wall clock time and date at job start Tue Mar 31 2020 06:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.53159 * 2 1 4 4 C 1.53119 * 109.49977 * 120.09171 * 2 1 3 5 5 C 1.53128 * 109.16023 * 62.29336 * 4 2 1 6 6 C 1.53035 * 109.27985 * 57.64815 * 5 4 2 7 7 N 1.46849 * 109.52336 * 300.82353 * 6 5 4 8 8 C 1.46903 * 110.99862 * 185.83918 * 7 6 5 9 9 C 1.52994 * 109.46904 * 45.79025 * 8 7 6 10 10 C 1.50707 * 109.47057 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99871 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00018 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00033 * 359.97438 * 12 10 9 14 14 C 1.46497 * 119.99807 * 179.97438 * 12 10 9 15 15 C 1.50694 * 109.47115 * 89.99947 * 14 12 10 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 12 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.46844 * 111.19648 * 61.74246 * 7 6 5 24 24 H 1.08997 * 109.46487 * 58.27332 * 23 7 6 25 25 C 1.53006 * 109.45995 * 178.25238 * 23 7 6 26 26 H 1.09004 * 109.47343 * 180.10117 * 1 2 3 27 27 H 1.09000 * 109.47608 * 300.09950 * 1 2 3 28 28 H 1.09002 * 109.47251 * 60.10482 * 1 2 3 29 29 H 1.09002 * 109.52121 * 182.18654 * 4 2 1 30 30 H 1.08993 * 109.53136 * 302.31898 * 4 2 1 31 31 H 1.09000 * 109.49961 * 177.59209 * 5 4 2 32 32 H 1.08996 * 109.49993 * 297.66792 * 5 4 2 33 33 H 1.08996 * 109.46421 * 180.80482 * 6 5 4 34 34 H 1.09004 * 109.46268 * 60.83787 * 6 5 4 35 35 H 1.09003 * 109.46947 * 285.79236 * 8 7 6 36 36 H 1.08995 * 109.47013 * 165.78786 * 8 7 6 37 37 H 1.09000 * 109.47693 * 59.99820 * 9 8 7 38 38 H 1.09008 * 109.47342 * 299.99683 * 9 8 7 39 39 H 1.08996 * 109.47419 * 270.00311 * 13 12 10 40 40 H 1.09004 * 109.47352 * 30.00015 * 13 12 10 41 41 H 1.08995 * 109.47003 * 149.99929 * 13 12 10 42 42 H 1.09007 * 109.47078 * 329.99586 * 14 12 10 43 43 H 1.09003 * 109.46733 * 210.00309 * 14 12 10 44 44 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 45 45 H 1.08993 * 109.47034 * 59.99755 * 25 23 7 46 46 H 1.08999 * 109.46974 * 179.97438 * 25 23 7 47 47 H 1.09004 * 109.46946 * 299.99749 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0411 -0.7237 1.2488 5 6 1.5749 -2.1818 1.2109 6 6 2.0846 -2.8420 -0.0722 7 7 1.5675 -2.1135 -1.2377 8 6 1.9224 -2.7997 -2.4873 9 6 1.6402 -4.2967 -2.3448 10 6 2.0048 -5.0007 -3.6265 11 8 2.4463 -4.3674 -4.5618 12 7 1.8392 -6.3340 -3.7336 13 6 1.3053 -7.0989 -2.6039 14 6 2.1930 -7.0183 -4.9796 15 6 3.6339 -7.4559 -4.9207 16 1 4.2269 -7.2450 -4.0431 17 6 4.1955 -8.1246 -5.9878 18 7 3.4735 -8.3810 -7.0567 19 14 5.9817 -8.6664 -5.9150 20 1 6.8484 -7.5880 -6.4545 21 1 6.3575 -8.9449 -4.5056 22 1 6.1591 -9.8970 -6.7271 23 6 2.0409 -0.7235 -1.2479 24 1 3.1308 -0.7111 -1.2542 25 6 1.5157 -0.0153 -2.4984 26 1 -0.3634 -1.0277 0.0018 27 1 -0.3634 0.5154 0.8891 28 1 -0.3634 0.5122 -0.8909 29 1 3.1304 -0.6901 1.2691 30 1 1.6451 -0.2367 2.1399 31 1 1.9715 -2.7132 2.0760 32 1 0.4857 -2.2161 1.2306 33 1 1.7424 -3.8762 -0.1092 34 1 3.1743 -2.8196 -0.0841 35 1 2.9812 -2.6479 -2.6971 36 1 1.3278 -2.3942 -3.3059 37 1 0.5814 -4.4486 -2.1349 38 1 2.2348 -4.7022 -1.5261 39 1 2.1272 -7.4354 -1.9721 40 1 0.6347 -6.4669 -2.0217 41 1 0.7567 -7.9635 -2.9775 42 1 2.0539 -6.3380 -5.8199 43 1 1.5531 -7.8912 -5.1091 44 1 3.8687 -8.8511 -7.8075 45 1 0.4259 -0.0281 -2.4924 46 1 1.8667 1.0166 -2.5059 47 1 1.8803 -0.5299 -3.3875 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250427715.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:54 Heat of formation + Delta-G solvation = -44.178701 kcal Electronic energy + Delta-G solvation = -23267.614040 eV Core-core repulsion = 20063.864192 eV Total energy + Delta-G solvation = -3203.749847 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.01430 -38.78585 -35.06146 -34.59081 -33.02947 -32.60115 -30.48689 -28.12067 -27.50696 -26.42520 -25.77551 -24.60466 -22.87655 -21.70819 -20.89607 -18.66728 -18.25616 -16.70663 -16.52585 -15.66063 -15.46222 -15.32152 -15.03296 -14.91103 -14.49842 -14.00112 -13.89174 -13.37735 -13.22888 -12.57843 -12.43695 -12.24445 -12.16920 -12.10076 -12.03039 -11.98250 -11.75896 -11.60491 -11.37197 -11.23232 -11.07267 -10.86126 -10.78580 -10.58013 -10.54579 -10.21253 -10.17179 -10.12596 -9.61866 -8.85605 -8.42416 -8.24539 -7.61582 -6.03328 -4.07881 3.31400 3.36947 3.38647 3.48414 3.70326 4.15249 4.45920 4.56532 4.62811 4.73541 4.97344 5.12860 5.17769 5.22231 5.25608 5.29755 5.36234 5.40433 5.44145 5.53602 5.60128 5.61939 5.65350 5.68889 5.78535 5.80947 5.90033 5.93143 5.94952 5.97690 6.06577 6.09898 6.18894 6.20700 6.22020 6.31991 6.41190 7.05873 7.11808 7.15403 7.45824 7.56869 7.93152 8.25076 8.44606 8.91582 9.12640 9.57060 11.04775 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027451 B = 0.003431 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.766102 B = 8159.664059 C = 8227.055608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 H 0.068 0.932 4 C -0.117 4.117 5 C -0.117 4.117 6 C 0.046 3.954 7 N -0.531 5.531 8 C 0.072 3.928 9 C -0.142 4.142 10 C 0.505 3.495 11 O -0.544 6.544 12 N -0.604 5.604 13 C 0.086 3.914 14 C 0.245 3.755 15 C -0.525 4.525 16 H 0.056 0.944 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.275 1.275 22 H -0.285 1.285 23 C 0.087 3.913 24 H 0.038 0.962 25 C -0.152 4.152 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.031 0.969 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.031 0.969 44 H 0.263 0.737 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.646 13.555 17.308 22.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.102 4.102 3 H 0.086 0.914 4 C -0.155 4.155 5 C -0.155 4.155 6 C -0.082 4.082 7 N -0.256 5.256 8 C -0.055 4.055 9 C -0.182 4.182 10 C 0.291 3.709 11 O -0.423 6.423 12 N -0.336 5.336 13 C -0.058 4.058 14 C 0.126 3.874 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.200 1.200 22 H -0.211 1.211 23 C -0.021 4.021 24 H 0.056 0.944 25 C -0.210 4.210 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.917 13.783 16.648 22.693 hybrid contribution 1.991 -0.546 -0.018 2.065 sum -4.925 13.237 16.630 21.818 Atomic orbital electron populations 1.21811 0.94502 1.02898 1.00566 1.21163 0.96951 0.98244 0.93821 0.91351 1.21629 1.00233 0.96015 0.97631 1.21621 1.01884 0.95379 0.96610 1.22229 0.97238 0.98415 0.90344 1.62043 1.59810 1.01548 1.02248 1.21851 1.00014 0.92094 0.91577 1.21827 1.03360 0.95734 0.97312 1.20294 0.79010 0.82573 0.89057 1.90664 1.45539 1.65395 1.40661 1.48152 1.62436 1.06575 1.16437 1.21615 0.98038 0.96514 0.89648 1.19292 0.95495 0.92073 0.80577 1.21433 0.96532 1.36336 1.02115 0.92582 1.24943 0.98147 0.95931 0.95148 1.69935 1.36372 1.41391 1.05732 0.86501 0.84927 0.78045 0.77960 1.20561 1.19961 1.21112 1.21591 0.96649 0.88447 0.95426 0.94413 1.21980 1.02307 0.99583 0.97096 0.91044 0.93827 0.92763 0.92487 0.92001 0.91873 0.90828 0.89990 0.95072 0.94081 0.89602 0.88857 0.89504 0.93358 0.92506 0.91452 0.93879 0.95054 0.92730 0.91407 0.92542 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.38 37.16 0.31 -0.92 16 2 C -0.08 -0.75 2.75 -90.54 -0.25 -1.00 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.12 -0.99 5.51 -26.60 -0.15 -1.14 16 5 C -0.12 -1.03 5.74 -26.65 -0.15 -1.18 16 6 C 0.05 0.49 4.85 -3.83 -0.02 0.47 16 7 N -0.53 -6.27 3.93 -226.69 -0.89 -7.16 16 8 C 0.07 1.05 3.65 -3.83 -0.01 1.04 16 9 C -0.14 -2.11 3.50 -27.88 -0.10 -2.21 16 10 C 0.50 10.56 7.67 -10.98 -0.08 10.48 16 11 O -0.54 -13.82 15.56 5.56 0.09 -13.74 16 12 N -0.60 -12.98 2.86 -182.96 -0.52 -13.50 16 13 C 0.09 1.37 10.29 59.85 0.62 1.98 16 14 C 0.24 6.52 5.20 -5.20 -0.03 6.50 16 15 C -0.53 -15.17 9.39 -34.44 -0.32 -15.50 16 16 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 19 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.09 0.95 2.10 -67.72 -0.14 0.81 16 24 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 25 C -0.15 -1.61 8.41 37.16 0.31 -1.30 16 26 H 0.07 0.70 6.01 -51.93 -0.31 0.39 16 27 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.47 6.42 -51.93 -0.33 0.14 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.65 6.58 -51.93 -0.34 0.31 16 33 H 0.08 0.84 5.81 -51.93 -0.30 0.54 16 34 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.04 0.68 8.04 -51.93 -0.42 0.26 16 36 H 0.09 1.34 6.80 -51.93 -0.35 0.98 16 37 H 0.09 1.21 7.40 -51.93 -0.38 0.83 16 38 H 0.09 1.17 6.17 -51.92 -0.32 0.85 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.70 6.44 -51.93 -0.33 0.37 16 41 H 0.07 1.03 7.89 -51.93 -0.41 0.62 16 42 H 0.04 1.29 7.42 -51.92 -0.39 0.91 16 43 H 0.03 0.84 7.89 -51.93 -0.41 0.43 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.07 0.70 6.42 -51.93 -0.33 0.37 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.75 6.55 -51.93 -0.34 0.41 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -32.60 354.62 -8.71 -41.30 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -8.33 Total: -2.83 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -0.11 Total: -0.32 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.68 Total: -46.87 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.60 -8.71 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250427715.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.877 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds