Wall clock time and date at job start Tue Mar 31 2020 06:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47043 * 2 1 4 4 C 1.52998 * 109.47251 * 239.99547 * 2 1 3 5 5 N 1.46901 * 109.47032 * 184.67325 * 4 2 1 6 6 C 1.46853 * 110.99976 * 169.67580 * 5 4 2 7 7 C 1.53040 * 109.52381 * 185.84565 * 6 5 4 8 8 C 1.53205 * 109.29445 * 300.82088 * 7 6 5 9 9 C 1.53118 * 109.12000 * 57.63076 * 8 7 6 10 10 H 1.08996 * 109.50030 * 62.32664 * 9 8 7 11 11 C 1.52997 * 109.50250 * 182.40502 * 9 8 7 12 12 C 1.46847 * 111.00517 * 293.88585 * 5 4 2 13 13 N 1.46501 * 109.46916 * 119.99711 * 2 1 3 14 14 C 1.34782 * 120.00058 * 279.08964 * 13 2 1 15 15 O 1.21282 * 119.99689 * 0.02562 * 14 13 2 16 16 C 1.50693 * 120.00142 * 180.02562 * 14 13 2 17 17 C 1.52996 * 109.47290 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47296 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99856 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00229 * 179.97438 * 18 17 16 21 21 N 1.31504 * 120.00081 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 119.99798 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46656 * 89.99597 * 22 20 18 24 24 H 1.48493 * 109.47091 * 209.99960 * 22 20 18 25 25 H 1.48496 * 109.46882 * 329.99975 * 22 20 18 26 26 H 1.08998 * 109.46944 * 60.00717 * 1 2 3 27 27 H 1.09003 * 109.47043 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47077 * 300.00213 * 1 2 3 29 29 H 1.09001 * 109.47205 * 64.67920 * 4 2 1 30 30 H 1.08996 * 109.47576 * 304.67611 * 4 2 1 31 31 H 1.09001 * 109.45759 * 305.85638 * 6 5 4 32 32 H 1.08996 * 109.46315 * 65.82370 * 6 5 4 33 33 H 1.09000 * 109.50717 * 60.75359 * 7 6 5 34 34 H 1.08994 * 109.50037 * 180.84008 * 7 6 5 35 35 H 1.09005 * 109.51245 * 297.75507 * 8 7 6 36 36 H 1.08996 * 109.57320 * 177.54496 * 8 7 6 37 37 H 1.09006 * 109.47202 * 179.97438 * 11 9 8 38 38 H 1.09004 * 109.46946 * 299.92129 * 11 9 8 39 39 H 1.08997 * 109.47484 * 59.92224 * 11 9 8 40 40 H 1.09000 * 109.45765 * 54.14530 * 12 5 4 41 41 H 1.09000 * 109.45821 * 294.17923 * 12 5 4 42 42 H 0.97002 * 120.00062 * 99.10055 * 13 2 1 43 43 H 1.08996 * 109.47173 * 300.00711 * 16 14 13 44 44 H 1.09005 * 109.46737 * 60.00220 * 16 14 13 45 45 H 1.09007 * 109.46782 * 300.00242 * 17 16 14 46 46 H 1.08998 * 109.47012 * 60.00076 * 17 16 14 47 47 H 0.97002 * 120.00176 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5047 -0.8198 -1.1940 6 6 4.0120 -1.7130 -2.2435 7 6 5.5197 -1.9062 -2.0659 8 6 6.2176 -0.5448 -2.1469 9 6 5.6362 0.3814 -1.0751 10 1 5.8351 -0.0350 -0.0877 11 6 6.2848 1.7626 -1.1872 12 6 4.1252 0.5083 -1.2814 13 7 2.0183 -0.6906 1.1962 14 6 2.0690 -0.0408 2.3760 15 8 1.7100 1.1155 2.4473 16 6 2.5718 -0.7509 3.6063 17 6 2.5263 0.2041 4.8008 18 6 3.0297 -0.5059 6.0311 19 1 3.3505 -1.5352 5.9673 20 6 3.0817 0.1588 7.2379 21 7 3.5205 -0.4609 8.3116 22 14 2.5275 1.9394 7.3481 23 1 1.0779 1.9877 7.6666 24 1 3.2925 2.6307 8.4167 25 1 2.7715 2.6151 6.0485 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.7468 -0.1615 -2.1372 30 1 1.6100 -1.7219 -1.2920 31 1 3.5112 -2.6785 -2.1719 32 1 3.8148 -1.2734 -3.2212 33 1 5.7167 -2.3585 -1.0939 34 1 5.8984 -2.5573 -2.8538 35 1 6.0532 -0.1095 -3.1327 36 1 7.2868 -0.6719 -1.9776 37 1 5.8702 2.4216 -0.4242 38 1 7.3612 1.6714 -1.0416 39 1 6.0856 2.1785 -2.1748 40 1 3.7066 1.1560 -0.5112 41 1 3.9274 0.9375 -2.2637 42 1 2.3052 -1.6154 1.1392 43 1 1.9414 -1.6165 3.8093 44 1 3.5982 -1.0794 3.4422 45 1 3.1565 1.0700 4.5979 46 1 1.4998 0.5322 4.9647 47 1 3.5568 0.0067 9.1607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330888075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:59 Heat of formation + Delta-G solvation = -64.575001 kcal Electronic energy + Delta-G solvation = -23117.639647 eV Core-core repulsion = 19913.005350 eV Total energy + Delta-G solvation = -3204.634297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.85912 -38.87157 -36.02280 -33.73140 -33.37614 -32.10698 -31.38308 -30.30320 -26.93814 -26.54851 -25.96975 -23.56983 -21.88677 -21.65554 -20.36083 -19.86916 -19.50353 -17.14886 -16.26852 -16.17272 -15.81568 -15.11193 -14.84549 -14.62700 -14.53687 -14.20552 -13.99305 -13.61250 -13.28085 -12.96859 -12.75501 -12.67691 -12.53963 -12.48927 -12.11265 -12.06813 -11.84518 -11.67279 -11.32980 -11.23605 -11.01170 -10.88465 -10.81073 -10.54341 -10.28988 -10.06998 -9.96038 -9.72344 -9.13662 -9.04912 -8.67250 -8.51653 -8.45279 -5.97928 -3.95925 3.29184 3.41636 3.47783 3.50729 3.59663 3.74834 4.50270 4.51729 4.55740 4.64922 4.76917 4.93487 5.01913 5.12800 5.21297 5.26523 5.31282 5.33621 5.37861 5.39993 5.47558 5.51272 5.55064 5.61222 5.63812 5.68063 5.73284 5.78716 5.95525 5.99736 6.03838 6.10490 6.19485 6.21460 6.23634 6.26843 6.77593 6.82119 6.89305 6.95459 7.44882 7.52210 7.84839 8.02396 8.57184 8.84369 9.06276 9.65646 11.15078 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.003968 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.507708 B = 7054.735450 C = 7682.215298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.080 0.920 4 C 0.048 3.952 5 N -0.533 5.533 6 C 0.057 3.943 7 C -0.117 4.117 8 C -0.115 4.115 9 C -0.090 4.090 10 H 0.082 0.918 11 C -0.147 4.147 12 C 0.060 3.940 13 N -0.721 5.721 14 C 0.512 3.488 15 O -0.548 6.548 16 C -0.121 4.121 17 C 0.003 3.997 18 C -0.523 4.523 19 H 0.072 0.928 20 C 0.069 3.931 21 N -0.905 5.905 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.261 1.261 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.029 0.971 42 H 0.401 0.599 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.022 0.978 46 H 0.017 0.983 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 -2.166 -26.155 26.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 H 0.098 0.902 4 C -0.080 4.080 5 N -0.257 5.257 6 C -0.071 4.071 7 C -0.155 4.155 8 C -0.153 4.153 9 C -0.109 4.109 10 H 0.100 0.900 11 C -0.205 4.205 12 C -0.068 4.068 13 N -0.374 5.374 14 C 0.300 3.700 15 O -0.425 6.425 16 C -0.161 4.161 17 C -0.035 4.035 18 C -0.561 4.561 19 H 0.090 0.910 20 C -0.132 4.132 21 N -0.544 5.544 22 Si 0.704 3.296 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.185 1.185 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.047 0.953 42 H 0.235 0.765 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.041 0.959 46 H 0.036 0.964 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.073 -1.501 -25.470 25.537 hybrid contribution -0.383 0.772 -0.676 1.096 sum 0.690 -0.729 -26.146 26.165 Atomic orbital electron populations 1.22157 0.95405 1.02059 1.02571 1.20812 0.93423 0.97288 0.84406 0.90170 1.22420 0.87851 1.01130 0.96610 1.61839 1.04770 1.11670 1.47439 1.22081 0.96026 0.96819 0.92175 1.21594 0.94113 0.97217 1.02578 1.21658 0.99689 0.95373 0.98559 1.21154 0.93835 0.95674 1.00198 0.89996 1.21795 1.00655 0.96449 1.01596 1.22187 0.94673 0.89931 0.99970 1.45986 1.67363 1.16269 1.07746 1.21439 0.76670 0.87112 0.84780 1.90630 1.48398 1.17744 1.85769 1.21629 1.01665 1.00431 0.92411 1.19348 0.97364 0.94813 0.92005 1.21145 1.43085 1.00098 0.91736 0.90975 1.24966 0.94603 0.98043 0.95622 1.69912 1.47426 1.37196 0.99896 0.86803 0.78903 0.85706 0.78195 1.20293 1.21510 1.18526 0.92281 0.92497 0.91400 0.93776 0.90164 0.90814 0.95278 0.90800 0.91729 0.92579 0.91827 0.92299 0.92422 0.93063 0.90278 0.95262 0.76502 0.89926 0.89732 0.95943 0.96415 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.41 37.16 0.35 -1.47 16 2 C 0.15 1.74 2.32 -67.93 -0.16 1.58 16 3 H 0.08 1.13 6.23 -51.93 -0.32 0.81 16 4 C 0.05 0.44 4.49 -3.82 -0.02 0.42 16 5 N -0.53 -5.17 4.39 -234.67 -1.03 -6.20 16 6 C 0.06 0.46 5.46 -3.83 -0.02 0.44 16 7 C -0.12 -0.93 6.10 -26.60 -0.16 -1.09 16 8 C -0.12 -0.95 5.29 -26.56 -0.14 -1.09 16 9 C -0.09 -0.89 2.88 -90.54 -0.26 -1.15 16 10 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 11 C -0.15 -1.35 9.20 37.16 0.34 -1.01 16 12 C 0.06 0.62 4.58 -3.84 -0.02 0.61 16 13 N -0.72 -9.89 4.85 -53.81 -0.26 -10.15 16 14 C 0.51 9.49 7.74 -10.99 -0.08 9.40 16 15 O -0.55 -12.26 15.46 5.56 0.09 -12.17 16 16 C -0.12 -2.43 5.64 -27.89 -0.16 -2.59 16 17 C 0.00 0.07 3.33 -27.88 -0.09 -0.03 16 18 C -0.52 -15.24 9.66 -34.44 -0.33 -15.58 16 19 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 20 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 21 N -0.91 -28.44 13.96 55.43 0.77 -27.67 16 22 Si 0.88 22.97 27.47 -169.99 -4.67 18.30 16 23 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.26 -6.82 6.54 56.52 0.37 -6.45 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.95 7.90 -51.93 -0.41 0.54 16 29 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.08 0.64 7.98 -51.93 -0.41 0.22 16 31 H 0.07 0.54 8.01 -51.93 -0.42 0.12 16 32 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.98 6.32 -51.93 -0.33 0.65 16 41 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.40 4.71 8.57 -40.82 -0.35 4.37 16 43 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 45 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 46 H 0.02 0.46 7.53 -51.93 -0.39 0.07 16 47 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 366.54 15.07 5.52 5.52 Total: -1.00 -33.30 366.54 -9.36 -42.66 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.93 Total: -0.72 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -0.85 Total: -9.58 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: -0.52 Total: -44.02 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.67 Total: 18.30 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.30 -9.36 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330888075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.917 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds