Wall clock time and date at job start Tue Mar 31 2020 06:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46925 * 2 1 4 4 C 1.53002 * 109.46832 * 119.99370 * 2 1 3 5 5 N 1.46905 * 109.46889 * 174.99910 * 4 2 1 6 6 C 1.46850 * 110.99431 * 45.79351 * 5 4 2 7 7 C 1.53040 * 109.52003 * 185.84037 * 6 5 4 8 8 C 1.53129 * 109.27687 * 300.82074 * 7 6 5 9 9 C 1.53112 * 109.16096 * 57.65332 * 8 7 6 10 10 H 1.09008 * 109.53567 * 62.30757 * 9 8 7 11 11 C 1.52997 * 109.50612 * 182.40521 * 9 8 7 12 12 C 1.46845 * 111.00063 * 169.99980 * 5 4 2 13 13 N 1.46504 * 109.47097 * 239.99516 * 2 1 3 14 14 C 1.34777 * 119.99858 * 85.00328 * 13 2 1 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 2 16 16 C 1.50694 * 120.00104 * 179.97438 * 14 13 2 17 17 C 1.53004 * 109.47175 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.46843 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00516 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99783 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99707 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99956 * 180.27458 * 20 18 17 23 23 H 1.48503 * 109.47407 * 269.72718 * 22 20 18 24 24 H 1.48505 * 109.47281 * 29.72474 * 22 20 18 25 25 H 1.48501 * 109.47274 * 149.72572 * 22 20 18 26 26 H 1.09004 * 109.47471 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47598 * 300.00405 * 1 2 3 28 28 H 1.08999 * 109.47453 * 60.00749 * 1 2 3 29 29 H 1.08990 * 109.47328 * 295.00234 * 4 2 1 30 30 H 1.08999 * 109.47164 * 55.00706 * 4 2 1 31 31 H 1.08997 * 109.46483 * 305.85302 * 6 5 4 32 32 H 1.08998 * 109.46161 * 65.82705 * 6 5 4 33 33 H 1.09000 * 109.50293 * 180.88519 * 7 6 5 34 34 H 1.08995 * 109.53861 * 60.77741 * 7 6 5 35 35 H 1.08997 * 109.52138 * 297.74828 * 8 7 6 36 36 H 1.08997 * 109.52108 * 177.55861 * 8 7 6 37 37 H 1.09000 * 109.47488 * 179.80260 * 11 9 8 38 38 H 1.09000 * 109.47239 * 299.80910 * 11 9 8 39 39 H 1.09000 * 109.46781 * 59.80457 * 11 9 8 40 40 H 1.09001 * 109.46506 * 294.18187 * 12 5 4 41 41 H 1.09001 * 109.45981 * 54.15008 * 12 5 4 42 42 H 0.96990 * 119.99827 * 265.00101 * 13 2 1 43 43 H 1.09006 * 109.46887 * 59.99757 * 16 14 13 44 44 H 1.08997 * 109.46876 * 299.99806 * 16 14 13 45 45 H 1.09001 * 109.46361 * 60.00344 * 17 16 14 46 46 H 1.08997 * 109.46991 * 300.00234 * 17 16 14 47 47 H 0.97005 * 119.99656 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5040 -0.8266 1.1905 6 6 4.1080 0.4515 0.7927 7 6 5.6151 0.2671 0.6008 8 6 6.2350 -0.2259 1.9114 9 6 5.5550 -1.5327 2.3287 10 1 5.7337 -2.2950 1.5702 11 6 6.1268 -2.0010 3.6682 12 6 4.0497 -1.2962 2.4704 13 7 2.0183 -0.6907 -1.1961 14 6 2.1471 -0.0184 -2.3571 15 8 1.8583 1.1582 -2.4117 16 6 2.6500 -0.7287 -3.5874 17 6 2.7008 0.2542 -4.7588 18 6 3.2030 -0.4563 -5.9892 19 1 3.4607 -1.5040 -5.9405 20 6 3.3347 0.2314 -7.1770 21 7 3.0223 1.5076 -7.2360 22 14 3.9500 -0.6511 -8.7041 23 1 5.4297 -0.5468 -8.7737 24 1 3.5571 -2.0819 -8.6410 25 1 3.3523 -0.0264 -9.9115 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 1.7516 -0.1582 2.1370 30 1 1.6054 -1.7197 1.2953 31 1 3.6614 0.7887 -0.1426 32 1 3.9291 1.1950 1.5694 33 1 6.0655 1.2194 0.3208 34 1 5.7955 -0.4660 -0.1853 35 1 6.0894 0.5247 2.6882 36 1 7.3012 -0.4000 1.7671 37 1 5.6399 -2.9295 3.9665 38 1 7.1989 -2.1693 3.5668 39 1 5.9490 -1.2378 4.4259 40 1 3.8710 -0.5444 3.2392 41 1 3.5606 -2.2283 2.7536 42 1 2.2490 -1.6318 -1.1525 43 1 1.9777 -1.5511 -3.8324 44 1 3.6493 -1.1205 -3.3977 45 1 3.3728 1.0767 -4.5140 46 1 1.7013 0.6456 -4.9483 47 1 3.1153 1.9915 -8.0715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330888082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:02 Heat of formation + Delta-G solvation = -63.808029 kcal Electronic energy + Delta-G solvation = -23056.393790 eV Core-core repulsion = 19851.792752 eV Total energy + Delta-G solvation = -3204.601039 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.92305 -38.74221 -36.04899 -33.51534 -33.35074 -32.06831 -31.27170 -30.09451 -27.00771 -26.39470 -25.62481 -23.18258 -22.63953 -21.67679 -20.17390 -19.79302 -19.47895 -16.86886 -16.25036 -15.92614 -15.63055 -15.21894 -14.70713 -14.55995 -14.44213 -14.35585 -14.18482 -13.45195 -13.19257 -13.00184 -12.71603 -12.67426 -12.24005 -12.20161 -12.06149 -12.02153 -11.93025 -11.45218 -11.17006 -11.08517 -11.02606 -10.88440 -10.76558 -10.55523 -10.39014 -10.24285 -9.88147 -9.58933 -9.09921 -8.91624 -8.63180 -8.43436 -8.27118 -5.91671 -3.95526 3.36197 3.37886 3.42123 3.44924 3.57300 3.82016 4.49407 4.51611 4.62180 4.65992 4.80421 5.00246 5.08866 5.21876 5.22941 5.30969 5.35499 5.37136 5.43234 5.44179 5.49790 5.54072 5.60156 5.60221 5.67694 5.78909 5.84044 5.88359 5.91829 6.04214 6.09841 6.16547 6.24622 6.30585 6.33475 6.36440 6.84745 6.97762 6.99202 7.01087 7.79920 7.93318 8.08284 8.13061 8.44947 8.92575 9.13775 9.67660 11.19285 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018798 B = 0.003647 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.128320 B = 7675.605938 C = 8593.712501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.085 0.915 4 C 0.048 3.952 5 N -0.532 5.532 6 C 0.049 3.951 7 C -0.117 4.117 8 C -0.115 4.115 9 C -0.090 4.090 10 H 0.080 0.920 11 C -0.146 4.146 12 C 0.062 3.938 13 N -0.726 5.726 14 C 0.511 3.489 15 O -0.541 6.541 16 C -0.129 4.129 17 C 0.038 3.962 18 C -0.525 4.525 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.274 1.274 25 H -0.287 1.287 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.027 0.973 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.030 0.970 41 H 0.072 0.928 42 H 0.400 0.600 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.005 -7.116 23.470 24.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.033 3.967 3 H 0.103 0.897 4 C -0.080 4.080 5 N -0.256 5.256 6 C -0.079 4.079 7 C -0.155 4.155 8 C -0.153 4.153 9 C -0.108 4.108 10 H 0.098 0.902 11 C -0.204 4.204 12 C -0.066 4.066 13 N -0.380 5.380 14 C 0.299 3.701 15 O -0.417 6.417 16 C -0.169 4.169 17 C 0.001 3.999 18 C -0.564 4.564 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.199 1.199 25 H -0.213 1.213 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.235 0.765 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.041 0.959 46 H 0.040 0.960 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.895 -6.436 22.943 23.904 hybrid contribution 0.199 -0.271 -0.153 0.369 sum 2.095 -6.707 22.790 23.849 Atomic orbital electron populations 1.22153 0.95372 1.02043 1.02526 1.20918 0.93699 0.97594 0.84477 0.89664 1.22446 0.87970 1.00974 0.96591 1.61932 1.04242 1.29505 1.29958 1.22238 0.95339 0.89336 1.00979 1.21572 0.94391 1.01729 0.97808 1.21649 0.99535 0.96651 0.97452 1.21161 0.93932 0.98058 0.97690 0.90195 1.21796 1.00900 1.00921 0.96744 1.22127 0.95195 0.99601 0.89662 1.46098 1.68698 1.14120 1.09036 1.21500 0.76384 0.87568 0.84620 1.90656 1.49532 1.16513 1.85032 1.21837 1.00878 1.00912 0.93316 1.18875 0.98209 0.93324 0.89503 1.21248 1.44130 0.96333 0.94653 0.92649 1.25026 0.95622 0.94850 0.98924 1.70005 1.48248 1.08152 1.26511 0.86605 0.78906 0.79766 0.82749 1.20706 1.19890 1.21275 0.92489 0.92275 0.91483 0.93870 0.90165 0.89342 0.95430 0.91507 0.90798 0.92568 0.91900 0.92670 0.92471 0.92967 0.95218 0.90988 0.76543 0.90490 0.90336 0.95926 0.95960 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.48 37.16 0.35 -1.52 16 2 C 0.14 1.72 1.88 -67.93 -0.13 1.60 16 3 H 0.09 1.26 5.98 -51.93 -0.31 0.95 16 4 C 0.05 0.47 4.83 -3.82 -0.02 0.45 16 5 N -0.53 -5.57 4.54 -234.67 -1.07 -6.63 16 6 C 0.05 0.58 4.80 -3.83 -0.02 0.56 16 7 C -0.12 -1.30 6.09 -26.64 -0.16 -1.47 16 8 C -0.12 -1.05 5.29 -26.61 -0.14 -1.20 16 9 C -0.09 -0.76 2.88 -90.54 -0.26 -1.02 16 10 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 11 C -0.15 -1.00 9.20 37.16 0.34 -0.66 16 12 C 0.06 0.55 4.71 -3.84 -0.02 0.53 16 13 N -0.73 -10.28 4.27 -53.80 -0.23 -10.51 16 14 C 0.51 9.84 7.55 -10.99 -0.08 9.76 16 15 O -0.54 -12.68 15.64 5.55 0.09 -12.60 16 16 C -0.13 -2.68 5.64 -27.88 -0.16 -2.84 16 17 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 18 C -0.53 -15.12 9.11 -34.44 -0.31 -15.43 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -27.74 13.29 55.43 0.74 -27.01 16 22 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.30 5.30 -51.93 -0.28 1.02 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 42 H 0.40 4.88 8.60 -40.82 -0.35 4.52 16 43 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 46 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 368.39 15.07 5.55 5.55 Total: -1.00 -32.84 368.39 -9.69 -42.53 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.93 Total: 0.49 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -0.82 Total: -8.72 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.56 Total: -44.15 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.84 -9.69 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330888082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.277 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds