Wall clock time and date at job start Tue Mar 31 2020 06:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 5 5 N 1.46904 * 109.47155 * 185.00075 * 4 2 1 6 6 C 1.46853 * 110.99691 * 294.21190 * 5 4 2 7 7 C 1.53043 * 109.51704 * 174.16125 * 6 5 4 8 8 C 1.53113 * 109.27965 * 59.18271 * 7 6 5 9 9 C 1.53130 * 109.15894 * 302.34232 * 8 7 6 10 10 H 1.09004 * 109.52928 * 297.69704 * 9 8 7 11 11 C 1.52998 * 109.50169 * 177.60029 * 9 8 7 12 12 C 1.46842 * 110.99656 * 170.00218 * 5 4 2 13 13 N 1.46506 * 109.47262 * 120.00338 * 2 1 3 14 14 C 1.34777 * 119.99873 * 275.00296 * 13 2 1 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 2 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 2 17 17 C 1.53002 * 109.47300 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.46919 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00202 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99746 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99981 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99781 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47109 * 90.00314 * 22 20 18 24 24 H 1.48507 * 109.46754 * 210.00053 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99884 * 22 20 18 26 26 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 28 28 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 29 29 H 1.08993 * 109.47014 * 305.00023 * 4 2 1 30 30 H 1.08997 * 109.46860 * 65.00150 * 4 2 1 31 31 H 1.09002 * 109.46028 * 294.17235 * 6 5 4 32 32 H 1.08996 * 109.45977 * 54.14854 * 6 5 4 33 33 H 1.09000 * 109.50324 * 299.23519 * 7 6 5 34 34 H 1.09000 * 109.52740 * 179.13794 * 7 6 5 35 35 H 1.09000 * 109.52398 * 182.44362 * 8 7 6 36 36 H 1.08997 * 109.57861 * 62.27519 * 8 7 6 37 37 H 1.09003 * 109.47201 * 300.19025 * 11 9 8 38 38 H 1.08999 * 109.47380 * 60.19497 * 11 9 8 39 39 H 1.09004 * 109.46354 * 180.19456 * 11 9 8 40 40 H 1.08999 * 109.46558 * 305.85316 * 12 5 4 41 41 H 1.09002 * 109.46618 * 65.83573 * 12 5 4 42 42 H 0.96995 * 120.00050 * 94.72411 * 13 2 1 43 43 H 1.09004 * 109.47043 * 299.99732 * 16 14 13 44 44 H 1.09000 * 109.46978 * 59.99653 * 16 14 13 45 45 H 1.09000 * 109.46497 * 299.99731 * 17 16 14 46 46 H 1.08987 * 109.47025 * 59.99846 * 17 16 14 47 47 H 0.96996 * 119.99730 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5041 -0.8267 -1.1904 6 6 4.1306 0.4994 -1.2658 7 6 5.6405 0.3641 -1.0559 8 6 6.2202 -0.5568 -2.1331 9 6 5.5168 -1.9152 -2.0646 10 1 5.7088 -2.3765 -1.0958 11 6 6.0481 -2.8221 -3.1764 12 6 4.0105 -1.7140 -2.2451 13 7 2.0184 -0.6907 1.1962 14 6 2.1470 -0.0184 2.3572 15 8 1.8589 1.1585 2.4115 16 6 2.6488 -0.7289 3.5877 17 6 2.7010 0.2543 4.7588 18 6 3.2022 -0.4565 5.9895 19 1 3.4583 -1.5045 5.9411 20 6 3.3347 0.2316 7.1770 21 7 3.0232 1.5079 7.2358 22 14 3.9567 -0.6493 8.7024 23 1 5.4367 -0.5460 8.7647 24 1 3.3653 -0.0223 9.9117 25 1 3.5623 -2.0798 8.6433 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6054 -1.7197 -1.2952 30 1 1.7517 -0.1583 -2.1370 31 1 3.9378 0.9369 -2.2453 32 1 3.7125 1.1430 -0.4919 33 1 5.8344 -0.0607 -0.0710 34 1 6.1077 1.3464 -1.1271 35 1 7.2883 -0.6906 -1.9617 36 1 6.0616 -0.1138 -3.1163 37 1 5.8571 -2.3597 -4.1448 38 1 7.1209 -2.9651 -3.0473 39 1 5.5445 -3.7877 -3.1292 40 1 3.5053 -2.6778 -2.1826 41 1 3.8185 -1.2659 -3.2201 42 1 2.2453 -1.6328 1.1535 43 1 1.9759 -1.5508 3.8325 44 1 3.6480 -1.1215 3.3986 45 1 3.3741 1.0758 4.5137 46 1 1.7021 0.6472 4.9481 47 1 3.1161 1.9918 8.0713 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330888090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:04 Heat of formation + Delta-G solvation = -67.176042 kcal Electronic energy + Delta-G solvation = -22951.087733 eV Core-core repulsion = 19746.340646 eV Total energy + Delta-G solvation = -3204.747087 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.77633 -38.76920 -35.99055 -33.58304 -33.33630 -32.06337 -31.25425 -30.06993 -26.98588 -26.42971 -25.59943 -23.19813 -22.51722 -21.69819 -20.18927 -19.86443 -19.46044 -16.82422 -16.20524 -15.94094 -15.59404 -15.21595 -14.67653 -14.54024 -14.46370 -14.34696 -14.23669 -13.43242 -13.16431 -13.04695 -12.72880 -12.62948 -12.29154 -12.18400 -12.08851 -11.91492 -11.90201 -11.53974 -11.16558 -11.06597 -11.02957 -10.87503 -10.79661 -10.54460 -10.41757 -10.29752 -9.85892 -9.56596 -9.07552 -8.88092 -8.56664 -8.44629 -8.25705 -5.90377 -3.94155 3.37042 3.42709 3.43423 3.45706 3.58820 3.82887 4.49074 4.52646 4.60227 4.66561 4.79445 4.99102 5.08934 5.18295 5.21641 5.31034 5.35470 5.37665 5.42413 5.44448 5.48281 5.51703 5.56945 5.60351 5.67477 5.79078 5.81946 5.86447 5.89713 6.01662 6.09058 6.16861 6.25484 6.28967 6.36222 6.39146 6.86459 6.96200 7.01704 7.04798 7.81503 7.95560 8.13553 8.15275 8.46681 8.98029 9.15568 9.68906 11.20625 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017689 B = 0.003631 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.551155 B = 7708.536708 C = 8596.166069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.083 0.917 4 C 0.048 3.952 5 N -0.532 5.532 6 C 0.054 3.946 7 C -0.118 4.118 8 C -0.115 4.115 9 C -0.090 4.090 10 H 0.081 0.919 11 C -0.146 4.146 12 C 0.063 3.937 13 N -0.722 5.722 14 C 0.512 3.488 15 O -0.543 6.543 16 C -0.129 4.129 17 C 0.038 3.962 18 C -0.525 4.525 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.891 5.891 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.028 0.972 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.029 0.971 42 H 0.398 0.602 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.979 -7.819 -23.759 25.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.101 0.899 4 C -0.080 4.080 5 N -0.256 5.256 6 C -0.073 4.073 7 C -0.155 4.155 8 C -0.152 4.152 9 C -0.109 4.109 10 H 0.099 0.901 11 C -0.204 4.204 12 C -0.065 4.065 13 N -0.375 5.375 14 C 0.300 3.700 15 O -0.419 6.419 16 C -0.169 4.169 17 C 0.001 3.999 18 C -0.563 4.563 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.232 0.768 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.041 0.959 46 H 0.040 0.960 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.886 -6.999 -23.145 24.253 hybrid contribution 0.203 -0.512 0.002 0.550 sum 2.089 -7.511 -23.142 24.420 Atomic orbital electron populations 1.22161 0.95521 1.01951 1.02507 1.20810 0.93298 0.97522 0.84440 0.89894 1.22424 0.87862 1.01012 0.96691 1.61836 1.04664 1.11996 1.47089 1.22136 0.95165 0.90033 0.99997 1.21571 0.94390 0.99585 1.00001 1.21640 0.99601 0.95222 0.98768 1.21173 0.93977 0.95879 0.99897 0.90087 1.21795 1.01054 0.99301 0.98203 1.22124 0.95450 0.96827 0.92124 1.45996 1.68698 1.13848 1.08996 1.21458 0.76367 0.87551 0.84626 1.90647 1.49649 1.16520 1.85088 1.21826 1.00843 1.00867 0.93378 1.18871 0.98198 0.93340 0.89514 1.21251 1.44119 0.96285 0.94657 0.92664 1.25027 0.95642 0.94847 0.98918 1.70003 1.48323 1.08130 1.26482 0.86608 0.78940 0.79749 0.82745 1.20709 1.21282 1.19901 0.92582 0.91486 0.92310 0.90315 0.93876 0.95331 0.90140 0.90694 0.91589 0.91888 0.92589 0.93001 0.92463 0.92622 0.90917 0.95284 0.76778 0.90571 0.90386 0.95932 0.95968 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.48 37.16 0.35 -1.54 16 2 C 0.15 1.82 2.35 -67.92 -0.16 1.66 16 3 H 0.08 1.24 6.10 -51.93 -0.32 0.92 16 4 C 0.05 0.47 4.52 -3.82 -0.02 0.45 16 5 N -0.53 -5.49 4.38 -234.66 -1.03 -6.52 16 6 C 0.05 0.60 5.29 -3.83 -0.02 0.58 16 7 C -0.12 -1.23 6.09 -26.65 -0.16 -1.39 16 8 C -0.11 -1.00 5.29 -26.61 -0.14 -1.14 16 9 C -0.09 -0.76 2.88 -90.53 -0.26 -1.02 16 10 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.15 -0.99 9.20 37.16 0.34 -0.65 16 12 C 0.06 0.54 4.74 -3.84 -0.02 0.52 16 13 N -0.72 -10.44 4.80 -53.80 -0.26 -10.70 16 14 C 0.51 10.05 7.79 -10.99 -0.09 9.97 16 15 O -0.54 -12.95 15.64 5.55 0.09 -12.87 16 16 C -0.13 -2.71 5.64 -27.88 -0.16 -2.87 16 17 C 0.04 1.06 4.26 -27.88 -0.12 0.94 16 18 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -27.88 13.29 55.43 0.74 -27.14 16 22 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.67 7.99 -51.93 -0.41 0.25 16 30 H 0.04 0.39 8.12 -51.93 -0.42 -0.04 16 31 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 1.07 6.31 -51.93 -0.33 0.74 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.58 8.02 -51.93 -0.42 0.16 16 41 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.40 4.92 8.61 -40.82 -0.35 4.57 16 43 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 45 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 46 H 0.02 0.66 8.10 -51.94 -0.42 0.24 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 370.61 15.07 5.59 5.59 Total: -1.00 -33.30 370.61 -9.73 -43.03 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.97 Total: 0.05 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -0.86 Total: -8.41 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.55 Total: -44.35 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.87 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.30 -9.73 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330888090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.145 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds