Wall clock time and date at job start Tue Mar 31 2020 06:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46623 * 2 1 4 4 C 1.53004 * 109.47117 * 240.00253 * 2 1 3 5 5 N 1.46498 * 109.47198 * 294.20697 * 4 2 1 6 6 C 1.34775 * 119.99845 * 174.96453 * 5 4 2 7 7 O 1.21280 * 120.00354 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99882 * 179.97438 * 6 5 4 9 9 C 1.52993 * 109.47373 * 180.02562 * 8 6 5 10 10 C 1.50705 * 109.47569 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99729 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00015 * 179.72977 * 10 9 8 13 13 N 1.31513 * 120.00233 * 0.27115 * 12 10 9 14 14 Si 1.86803 * 119.99916 * 180.27648 * 12 10 9 15 15 H 1.48499 * 109.46814 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47384 * 119.99286 * 14 12 10 17 17 H 1.48499 * 109.47154 * 239.99701 * 14 12 10 18 18 N 1.46896 * 109.46875 * 120.00586 * 2 1 3 19 19 C 1.46848 * 110.99754 * 176.40299 * 18 2 1 20 20 C 1.53042 * 109.52358 * 185.83481 * 19 18 2 21 21 C 1.53116 * 109.27814 * 300.81855 * 20 19 18 22 22 C 1.53118 * 109.15967 * 57.65527 * 21 20 19 23 23 H 1.09001 * 109.50277 * 62.32472 * 22 21 20 24 24 C 1.53000 * 109.50503 * 182.40436 * 22 21 20 25 25 C 1.46850 * 111.00026 * 300.60584 * 18 2 1 26 26 H 1.09003 * 109.46867 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47494 * 299.99433 * 1 2 3 28 28 H 1.09000 * 109.47161 * 59.99794 * 1 2 3 29 29 H 1.08994 * 109.47002 * 174.20076 * 4 2 1 30 30 H 1.08999 * 109.46839 * 54.20482 * 4 2 1 31 31 H 0.97005 * 120.00170 * 354.96511 * 5 4 2 32 32 H 1.09002 * 109.47026 * 60.00114 * 8 6 5 33 33 H 1.08999 * 109.47626 * 300.00615 * 8 6 5 34 34 H 1.09002 * 109.46955 * 60.00066 * 9 8 6 35 35 H 1.09007 * 109.47451 * 300.00537 * 9 8 6 36 36 H 0.97002 * 120.00216 * 180.02562 * 13 12 10 37 37 H 1.08997 * 109.46307 * 305.85531 * 19 18 2 38 38 H 1.09007 * 109.46423 * 65.81874 * 19 18 2 39 39 H 1.08995 * 109.49965 * 60.76039 * 20 19 18 40 40 H 1.09002 * 109.49797 * 180.87522 * 20 19 18 41 41 H 1.08994 * 109.51942 * 177.55763 * 21 20 19 42 42 H 1.08996 * 109.52212 * 297.68499 * 21 20 19 43 43 H 1.09003 * 109.47257 * 59.99506 * 24 22 21 44 44 H 1.08995 * 109.47416 * 179.97438 * 24 22 21 45 45 H 1.09002 * 109.47039 * 299.99978 * 24 22 21 46 46 H 1.08999 * 109.46348 * 294.18401 * 25 18 2 47 47 H 1.09001 * 109.46092 * 54.14690 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6689 -2.1368 -1.1817 6 6 1.9253 -2.9512 -2.2245 7 8 2.4628 -2.5121 -3.2191 8 6 1.5440 -4.4075 -2.1548 9 6 1.9431 -5.1022 -3.4582 10 6 1.5612 -6.5584 -3.3887 11 1 1.0822 -6.9494 -2.5032 12 6 1.8189 -7.3904 -4.4575 13 7 2.4027 -6.9144 -5.5356 14 14 1.3386 -9.1937 -4.3744 15 1 0.7019 -9.4764 -3.0629 16 1 0.3808 -9.5017 -5.4666 17 1 2.5515 -10.0366 -4.5273 18 7 2.0196 -0.6926 1.1993 19 6 3.4850 -0.7871 1.1910 20 6 3.9494 -1.6376 2.3756 21 6 3.4682 -0.9943 3.6792 22 6 1.9431 -0.8632 3.6418 23 1 1.4942 -1.8543 3.5760 24 6 1.4589 -0.1667 4.9151 25 6 1.5369 -0.0353 2.4206 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.1250 -0.6322 -1.3027 30 1 1.5944 -0.2707 -2.1362 31 1 1.2385 -2.4880 -0.3864 32 1 0.4670 -4.4946 -2.0112 33 1 2.0611 -4.8789 -1.3191 34 1 3.0201 -5.0151 -3.6013 35 1 1.4262 -4.6309 -4.2942 36 1 2.5836 -7.4997 -6.2877 37 1 3.8138 -1.2500 0.2606 38 1 3.9139 0.2118 1.2709 39 1 3.5321 -2.6407 2.2891 40 1 5.0379 -1.6946 2.3780 41 1 3.7595 -1.6196 4.5230 42 1 3.9172 -0.0068 3.7854 43 1 1.9071 0.8248 4.9798 44 1 0.3733 -0.0733 4.8878 45 1 1.7516 -0.7551 5.7848 46 1 1.9749 0.9601 2.4946 47 1 0.4507 0.0480 2.3831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330895105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:09 Heat of formation + Delta-G solvation = -62.704626 kcal Electronic energy + Delta-G solvation = -22883.611182 eV Core-core repulsion = 19679.057990 eV Total energy + Delta-G solvation = -3204.553192 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.00806 -38.74644 -36.15788 -33.41929 -33.28209 -32.51050 -30.98822 -30.04863 -27.65675 -26.25886 -25.21439 -24.17302 -22.05141 -21.65305 -20.14853 -19.86080 -19.45769 -16.84300 -16.69804 -15.75421 -15.54171 -15.24473 -14.85912 -14.65936 -14.36223 -14.28104 -14.21758 -13.72148 -13.54619 -13.10515 -12.87085 -12.76680 -12.33714 -12.15631 -12.12090 -11.90356 -11.71826 -11.49563 -11.25362 -11.19940 -11.07261 -10.90376 -10.84742 -10.53458 -10.45338 -10.34929 -9.87986 -9.58609 -9.08749 -8.91519 -8.60544 -8.51198 -8.26903 -5.91265 -3.95126 3.35738 3.39456 3.42596 3.46079 3.50119 3.86240 4.42934 4.51124 4.52032 4.59189 4.72082 4.85016 4.93749 5.10857 5.12032 5.18298 5.27306 5.30978 5.39466 5.43664 5.48891 5.51498 5.55449 5.60411 5.67997 5.73819 5.78446 5.79164 5.85950 5.90721 5.95387 6.06018 6.09611 6.20496 6.33846 6.36390 6.79449 6.90131 6.98303 7.01173 7.80854 7.93982 8.11877 8.13920 8.45470 8.94356 9.14531 9.68125 11.19776 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022276 B = 0.003226 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.634284 B = 8676.310848 C = 9198.266285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 H 0.051 0.949 4 C 0.126 3.874 5 N -0.730 5.730 6 C 0.507 3.493 7 O -0.542 6.542 8 C -0.129 4.129 9 C 0.037 3.963 10 C -0.524 4.524 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 N -0.532 5.532 19 C 0.051 3.949 20 C -0.117 4.117 21 C -0.115 4.115 22 C -0.090 4.090 23 H 0.080 0.920 24 C -0.146 4.146 25 C 0.059 3.941 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.404 0.596 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.260 0.740 37 H 0.083 0.917 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.030 0.970 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.745 16.823 20.968 26.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.038 4.038 3 H 0.069 0.931 4 C 0.001 3.999 5 N -0.385 5.385 6 C 0.295 3.705 7 O -0.418 6.418 8 C -0.169 4.169 9 C 0.000 4.000 10 C -0.563 4.563 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.529 5.529 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.211 1.211 18 N -0.257 5.257 19 C -0.077 4.077 20 C -0.155 4.155 21 C -0.153 4.153 22 C -0.109 4.109 23 H 0.099 0.901 24 C -0.204 4.204 25 C -0.069 4.069 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.240 0.760 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.048 0.952 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.472 16.627 20.043 26.083 hybrid contribution -0.049 -0.235 0.378 0.448 sum -1.521 16.393 20.421 26.231 Atomic orbital electron populations 1.21898 0.93685 1.03134 1.01707 1.21895 0.96316 0.95711 0.89917 0.93143 1.21267 0.99581 0.82803 0.96211 1.46049 1.64097 1.08650 1.19717 1.21529 0.77529 0.89483 0.81910 1.90657 1.42172 1.77315 1.31685 1.21825 1.01753 0.89269 1.04021 1.18890 0.97620 0.93690 0.89840 1.21284 1.39520 0.94264 1.01197 0.92575 1.25030 0.95319 0.98620 0.95497 1.70012 1.42273 1.35412 1.05236 0.86547 0.78164 0.85368 0.77956 1.19739 1.21065 1.21065 1.61883 1.10208 1.52255 1.01340 1.22177 0.87022 0.98550 0.99917 1.21575 1.00184 1.00072 0.93645 1.21643 0.95280 1.00576 0.97797 1.21168 0.95866 1.00156 0.93670 0.90145 1.21796 1.01051 1.00361 0.97189 1.22202 1.00443 0.95023 0.89237 0.91294 0.92470 0.91896 0.92264 0.91257 0.76022 0.90449 0.90392 0.95916 0.95910 0.93074 0.89851 0.95232 0.90771 0.91592 0.91922 0.92555 0.92979 0.92604 0.92476 0.95218 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.84 37.16 0.33 -0.94 16 2 C 0.07 0.67 2.34 -67.71 -0.16 0.51 16 3 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 4 C 0.13 1.60 4.62 -4.04 -0.02 1.58 16 5 N -0.73 -10.62 5.08 -60.30 -0.31 -10.93 16 6 C 0.51 10.04 7.83 -10.99 -0.09 9.95 16 7 O -0.54 -13.12 15.98 5.56 0.09 -13.03 16 8 C -0.13 -2.70 5.64 -27.89 -0.16 -2.86 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.87 13.29 55.43 0.74 -27.13 16 14 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 N -0.53 -4.94 3.86 -226.68 -0.87 -5.81 16 19 C 0.05 0.50 5.15 -3.83 -0.02 0.48 16 20 C -0.12 -1.04 6.09 -26.65 -0.16 -1.20 16 21 C -0.12 -0.88 5.29 -26.61 -0.14 -1.02 16 22 C -0.09 -0.67 2.88 -90.54 -0.26 -0.93 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 24 C -0.15 -0.90 9.20 37.16 0.34 -0.56 16 25 C 0.06 0.47 4.49 -3.83 -0.02 0.45 16 26 H 0.07 0.66 7.35 -51.93 -0.38 0.27 16 27 H 0.06 0.42 6.27 -51.93 -0.33 0.10 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.80 6.56 -51.93 -0.34 0.46 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.40 5.15 7.44 -40.82 -0.30 4.85 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.08 0.96 6.04 -51.93 -0.31 0.64 16 38 H 0.03 0.28 8.14 -51.92 -0.42 -0.14 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.08 0.59 5.99 -51.93 -0.31 0.28 16 LS Contribution 364.28 15.07 5.49 5.49 Total: -1.00 -33.25 364.28 -9.47 -42.72 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.70 Total: -0.73 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -0.88 Total: -7.52 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.44 Total: -43.87 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.25 -9.47 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330895105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.988 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds