Wall clock time and date at job start Tue Mar 31 2020 06:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46662 * 2 1 4 4 C 1.52996 * 109.47336 * 119.99756 * 2 1 3 5 5 N 1.46498 * 109.47059 * 175.00083 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.52990 * 109.47398 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47398 * 180.02562 * 9 8 6 11 11 H 1.08001 * 119.99463 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00445 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00506 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99943 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47483 * 89.99798 * 14 12 10 16 16 H 1.48502 * 109.47495 * 210.00312 * 14 12 10 17 17 H 1.48502 * 109.47376 * 329.99929 * 14 12 10 18 18 N 1.46896 * 109.47313 * 240.00157 * 2 1 3 19 19 C 1.46846 * 111.00171 * 306.04573 * 18 2 1 20 20 C 1.53033 * 109.52546 * 185.84100 * 19 18 2 21 21 C 1.53118 * 109.27823 * 300.81939 * 20 19 18 22 22 C 1.53115 * 109.16224 * 57.65374 * 21 20 19 23 23 H 1.08998 * 109.50298 * 62.32742 * 22 21 20 24 24 C 1.53006 * 109.50291 * 182.40828 * 22 21 20 25 25 C 1.46854 * 111.00179 * 70.25476 * 18 2 1 26 26 H 1.09001 * 109.47284 * 60.00249 * 1 2 3 27 27 H 1.09000 * 109.46662 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47064 * 300.00046 * 1 2 3 29 29 H 1.09004 * 109.47066 * 55.00351 * 4 2 1 30 30 H 1.08994 * 109.46974 * 295.00498 * 4 2 1 31 31 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 32 32 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 33 33 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 34 34 H 1.08998 * 109.47508 * 300.00200 * 9 8 6 35 35 H 1.09011 * 109.47182 * 60.00188 * 9 8 6 36 36 H 0.97000 * 120.00920 * 179.97438 * 13 12 10 37 37 H 1.09002 * 109.45838 * 305.85568 * 19 18 2 38 38 H 1.08995 * 109.46262 * 65.82069 * 19 18 2 39 39 H 1.09002 * 109.50576 * 60.76057 * 20 19 18 40 40 H 1.08999 * 109.50545 * 180.87720 * 20 19 18 41 41 H 1.09001 * 109.52513 * 177.56575 * 21 20 19 42 42 H 1.09007 * 109.51971 * 297.68670 * 21 20 19 43 43 H 1.08994 * 109.46964 * 59.99759 * 24 22 21 44 44 H 1.09000 * 109.46795 * 180.02562 * 24 22 21 45 45 H 1.08999 * 109.47124 * 299.99745 * 24 22 21 46 46 H 1.09005 * 109.45965 * 294.17808 * 25 18 2 47 47 H 1.08993 * 109.46154 * 54.14192 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1905 6 6 4.1736 -1.4236 2.1935 7 8 3.5706 -1.8787 3.1423 8 6 5.6760 -1.5262 2.1362 9 6 6.1864 -2.2430 3.3877 10 6 7.6889 -2.3450 3.3307 11 1 8.2260 -1.9395 2.4859 12 6 8.3778 -2.9569 4.3563 13 7 9.6890 -3.0455 4.3068 14 14 7.4488 -3.6602 5.8163 15 1 7.0945 -5.0760 5.5423 16 1 8.3043 -3.5896 7.0281 17 1 6.2089 -2.8740 6.0394 18 7 2.0197 -0.6924 -1.1994 19 6 1.4346 -2.0349 -1.3078 20 6 2.0746 -2.7784 -2.4824 21 6 1.8320 -1.9900 -3.7723 22 6 2.4081 -0.5800 -3.6154 23 1 3.4856 -0.6421 -3.4628 24 6 2.1170 0.2341 -4.8778 25 6 1.7585 0.0998 -2.4080 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6055 -1.7198 1.2952 30 1 1.7517 -0.1583 2.1369 31 1 3.9825 -0.4620 0.4319 32 1 5.9681 -2.0901 1.2503 33 1 6.1069 -0.5261 2.0886 34 1 5.8943 -1.6794 4.2738 35 1 5.7555 -3.2432 3.4348 36 1 10.1738 -3.4756 5.0285 37 1 1.6179 -2.5865 -0.3857 38 1 0.3606 -1.9507 -1.4731 39 1 3.1467 -2.8752 -2.3112 40 1 1.6290 -3.7691 -2.5722 41 1 2.3230 -2.4936 -4.6050 42 1 0.7609 -1.9275 -3.9650 43 1 1.0395 0.2969 -5.0291 44 1 2.5278 1.2375 -4.7657 45 1 2.5770 -0.2524 -5.7380 46 1 0.6829 0.1740 -2.5681 47 1 2.1769 1.0987 -2.2850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330895106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:12 Heat of formation + Delta-G solvation = -62.005720 kcal Electronic energy + Delta-G solvation = -22872.105054 eV Core-core repulsion = 19667.582169 eV Total energy + Delta-G solvation = -3204.522885 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.10779 -38.88583 -36.19662 -33.57996 -33.37859 -32.31511 -31.24958 -30.31850 -27.23114 -26.80996 -25.36284 -24.20440 -22.62866 -21.13499 -20.46671 -19.60378 -19.31978 -17.09943 -16.60894 -15.99692 -15.77740 -15.38255 -14.88583 -14.80401 -14.57779 -14.31930 -14.03031 -13.64302 -13.40516 -13.16495 -12.85110 -12.77503 -12.49651 -12.48092 -12.20136 -12.15353 -12.08709 -11.69636 -11.37375 -11.33016 -10.97809 -10.90294 -10.87604 -10.50228 -10.47295 -10.07927 -9.96669 -9.72479 -9.14941 -9.07719 -8.69047 -8.51700 -8.45259 -5.97960 -3.96102 3.27295 3.41841 3.45804 3.48153 3.59907 3.75482 4.40972 4.48689 4.55779 4.57624 4.65432 4.82219 4.90905 4.99463 5.05878 5.14069 5.26057 5.28970 5.34483 5.37698 5.39153 5.40208 5.47607 5.50689 5.55549 5.68424 5.70958 5.76391 5.81258 5.85559 5.90377 5.96934 6.02667 6.18665 6.20201 6.21626 6.73166 6.81048 6.86339 6.91454 7.44565 7.51740 7.84593 8.01532 8.56914 8.82091 9.06017 9.65501 11.14990 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023318 B = 0.003331 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.522207 B = 8403.268581 C = 8979.564165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.069 3.931 3 H 0.089 0.911 4 C 0.130 3.870 5 N -0.728 5.728 6 C 0.508 3.492 7 O -0.549 6.549 8 C -0.121 4.121 9 C 0.002 3.998 10 C -0.523 4.523 11 H 0.072 0.928 12 C 0.068 3.932 13 N -0.905 5.905 14 Si 0.877 3.123 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.261 1.261 18 N -0.529 5.529 19 C 0.051 3.949 20 C -0.118 4.118 21 C -0.115 4.115 22 C -0.090 4.090 23 H 0.081 0.919 24 C -0.146 4.146 25 C 0.061 3.939 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.405 0.595 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.022 0.978 35 H 0.018 0.982 36 H 0.263 0.737 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.033 0.967 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.565 7.318 -18.380 28.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.040 4.040 3 H 0.107 0.893 4 C 0.005 3.995 5 N -0.382 5.382 6 C 0.296 3.704 7 O -0.426 6.426 8 C -0.161 4.161 9 C -0.036 4.036 10 C -0.561 4.561 11 H 0.090 0.910 12 C -0.133 4.133 13 N -0.544 5.544 14 Si 0.705 3.295 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.185 1.185 18 N -0.253 5.253 19 C -0.076 4.076 20 C -0.156 4.156 21 C -0.152 4.152 22 C -0.109 4.109 23 H 0.099 0.901 24 C -0.204 4.204 25 C -0.067 4.067 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.240 0.760 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.051 0.949 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.340 6.864 -17.537 27.719 hybrid contribution -1.084 -0.132 0.299 1.132 sum -21.424 6.732 -17.238 28.310 Atomic orbital electron populations 1.22382 0.96643 1.02704 1.02548 1.21971 0.93330 0.98556 0.90138 0.89308 1.21254 0.82050 1.00242 0.95972 1.45967 1.06503 1.61451 1.24264 1.21497 0.91413 0.76196 0.81262 1.90638 1.70853 1.47469 1.33624 1.21628 0.88355 1.03013 1.03091 1.19355 0.96252 0.95654 0.92332 1.21141 0.89759 1.37979 1.07194 0.90951 1.24971 0.94698 0.95471 0.98154 1.69911 1.06523 1.44602 1.33387 0.86796 0.80445 0.80068 0.82241 1.20285 1.21517 1.18516 1.62054 1.58723 1.02693 1.01810 1.22153 0.96207 0.89744 0.99532 1.21587 1.02194 0.97969 0.93849 1.21637 1.00432 0.95427 0.97753 1.21173 1.01263 0.94694 0.93783 0.90077 1.21795 1.01346 0.99983 0.97276 1.22144 0.98224 0.96834 0.89494 0.92232 0.91904 0.91597 0.92042 0.91601 0.76001 0.89739 0.89795 0.95922 0.96371 0.92783 0.90327 0.94694 0.90774 0.91663 0.91891 0.92569 0.92999 0.92559 0.92455 0.94863 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 8.45 37.16 0.31 -1.06 16 2 C 0.07 0.60 2.47 -67.71 -0.17 0.44 16 3 H 0.09 0.74 7.98 -51.93 -0.41 0.32 16 4 C 0.13 1.55 4.85 -4.04 -0.02 1.53 16 5 N -0.73 -10.16 5.39 -60.30 -0.32 -10.49 16 6 C 0.51 9.58 7.83 -10.98 -0.09 9.50 16 7 O -0.55 -12.54 15.98 5.55 0.09 -12.46 16 8 C -0.12 -2.43 5.64 -27.89 -0.16 -2.59 16 9 C 0.00 0.05 3.33 -27.89 -0.09 -0.04 16 10 C -0.52 -15.27 9.66 -34.44 -0.33 -15.61 16 11 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.91 -28.47 13.96 55.43 0.77 -27.70 16 14 Si 0.88 23.01 27.47 -169.99 -4.67 18.34 16 15 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 17 H -0.26 -6.83 6.54 56.52 0.37 -6.46 16 18 N -0.53 -4.65 4.04 -226.69 -0.92 -5.57 16 19 C 0.05 0.47 4.54 -3.84 -0.02 0.45 16 20 C -0.12 -1.01 6.09 -26.65 -0.16 -1.17 16 21 C -0.11 -0.85 5.29 -26.61 -0.14 -0.99 16 22 C -0.09 -0.66 2.88 -90.54 -0.26 -0.92 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 24 C -0.15 -0.89 9.20 37.16 0.34 -0.55 16 25 C 0.06 0.46 4.42 -3.83 -0.02 0.44 16 26 H 0.06 0.41 6.82 -51.93 -0.35 0.05 16 27 H 0.06 0.49 6.46 -51.93 -0.34 0.16 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.80 6.67 -51.93 -0.35 0.46 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.40 4.90 8.14 -40.82 -0.33 4.56 16 32 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 35 H 0.02 0.48 7.53 -51.92 -0.39 0.09 16 36 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 37 H 0.08 0.84 6.33 -51.93 -0.33 0.51 16 38 H 0.03 0.30 6.57 -51.93 -0.34 -0.04 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.03 0.25 6.88 -51.93 -0.36 -0.11 16 47 H 0.07 0.53 8.01 -51.93 -0.42 0.12 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -33.45 360.26 -9.16 -42.61 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -8.65 Total: -1.55 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -0.90 Total: -8.62 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.47 Total: -43.76 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.67 Total: 18.34 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.45 -9.16 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330895106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.394 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds