Wall clock time and date at job start Tue Mar 31 2020 06:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46590 * 2 1 4 4 C 1.53000 * 109.47223 * 239.99769 * 2 1 3 5 5 N 1.46502 * 109.47079 * 184.99628 * 4 2 1 6 6 C 1.34773 * 119.99902 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00446 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99673 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.46850 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47242 * 180.02562 * 9 8 6 11 11 H 1.07994 * 119.99741 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00312 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00022 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00110 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47048 * 90.00067 * 14 12 10 16 16 H 1.48502 * 109.47097 * 210.00039 * 14 12 10 17 17 H 1.48492 * 109.47343 * 329.99876 * 14 12 10 18 18 N 1.46902 * 109.47069 * 119.99339 * 2 1 3 19 19 C 1.46846 * 110.99617 * 59.21445 * 18 2 1 20 20 C 1.53040 * 109.51964 * 174.15808 * 19 18 2 21 21 C 1.53119 * 109.28089 * 59.17912 * 20 19 18 22 22 C 1.53124 * 109.15841 * 302.34776 * 21 20 19 23 23 H 1.09000 * 109.53108 * 297.68809 * 22 21 20 24 24 C 1.52995 * 109.50242 * 177.59394 * 22 21 20 25 25 C 1.46846 * 111.00204 * 295.00340 * 18 2 1 26 26 H 1.09000 * 109.47556 * 60.00275 * 1 2 3 27 27 H 1.09001 * 109.46798 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47521 * 300.00203 * 1 2 3 29 29 H 1.08998 * 109.46777 * 304.99982 * 4 2 1 30 30 H 1.08997 * 109.46790 * 64.99886 * 4 2 1 31 31 H 0.97005 * 119.99806 * 0.02562 * 5 4 2 32 32 H 1.08997 * 109.47257 * 299.99617 * 8 6 5 33 33 H 1.08997 * 109.47197 * 60.00577 * 8 6 5 34 34 H 1.09002 * 109.47257 * 300.00410 * 9 8 6 35 35 H 1.09001 * 109.47280 * 60.00224 * 9 8 6 36 36 H 0.96994 * 120.00424 * 180.02562 * 13 12 10 37 37 H 1.08996 * 109.46231 * 294.17554 * 19 18 2 38 38 H 1.09004 * 109.46418 * 54.14394 * 19 18 2 39 39 H 1.09004 * 109.50602 * 299.23671 * 20 19 18 40 40 H 1.09001 * 109.53370 * 179.14510 * 20 19 18 41 41 H 1.08998 * 109.52394 * 182.44064 * 21 20 19 42 42 H 1.09003 * 109.56984 * 62.28008 * 21 20 19 43 43 H 1.08995 * 109.47150 * 300.19913 * 24 22 21 44 44 H 1.09008 * 109.46985 * 60.19485 * 24 22 21 45 45 H 1.08994 * 109.47635 * 180.19284 * 24 22 21 46 46 H 1.09001 * 109.45990 * 305.85570 * 25 18 2 47 47 H 1.08999 * 109.46398 * 65.83493 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.1730 -1.4291 -2.1906 7 8 3.5700 -1.8842 -3.1393 8 6 5.6750 -1.5366 -2.1305 9 6 6.1850 -2.2580 -3.3796 10 6 7.6869 -2.3662 -3.3193 11 1 8.2240 -1.9605 -2.4747 12 6 8.3755 -2.9820 -4.3428 13 7 7.7216 -3.4756 -5.3716 14 14 10.2372 -3.1153 -4.2683 15 1 10.6161 -4.3790 -3.5865 16 1 10.7893 -3.1119 -5.6469 17 1 10.7863 -1.9612 -3.5124 18 7 2.0196 -0.6924 1.1995 19 6 1.5335 -2.0773 1.2430 20 6 2.1777 -2.8087 2.4229 21 6 1.8223 -2.0822 3.7230 22 6 2.2965 -0.6291 3.6325 23 1 3.3810 -0.6056 3.5258 24 6 1.8921 0.1203 4.9036 25 6 1.6488 0.0391 2.4176 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.6054 -1.7198 -1.2950 30 1 1.7516 -0.1584 -2.1369 31 1 3.9824 -0.4626 -0.4315 32 1 6.1093 -0.5379 -2.0855 33 1 5.9638 -2.0989 -1.2425 34 1 5.7507 -3.2568 -3.4252 35 1 5.8963 -1.6955 -4.2675 36 1 8.2059 -3.9091 -6.0915 37 1 0.4501 -2.0783 1.3628 38 1 1.7965 -2.5839 0.3143 39 1 3.2604 -2.8201 2.2967 40 1 1.8055 -3.8323 2.4644 41 1 2.3146 -2.5745 4.5617 42 1 0.7425 -2.1045 3.8703 43 1 0.8077 0.0952 5.0107 44 1 2.3537 -0.3561 5.7687 45 1 2.2268 1.1554 4.8373 46 1 1.9955 1.0697 2.3421 47 1 0.5649 0.0280 2.5321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330895107.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:15 Heat of formation + Delta-G solvation = -64.205487 kcal Electronic energy + Delta-G solvation = -22833.029042 eV Core-core repulsion = 19628.410768 eV Total energy + Delta-G solvation = -3204.618274 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.07505 -38.75927 -36.13976 -33.49123 -33.32910 -32.30887 -30.98410 -30.17601 -27.13522 -26.62192 -25.18369 -24.17912 -22.57313 -21.45343 -20.44193 -19.54740 -19.24648 -16.75841 -16.56458 -15.91571 -15.50290 -15.33387 -14.78662 -14.74471 -14.54355 -14.39907 -14.25021 -13.56758 -13.33457 -13.05934 -12.82122 -12.70950 -12.44101 -12.14976 -12.10542 -12.07390 -12.00270 -11.56659 -11.32835 -11.07623 -10.93762 -10.88239 -10.84251 -10.54868 -10.45884 -10.43619 -9.86932 -9.57959 -9.09103 -8.91265 -8.59907 -8.46626 -8.26094 -5.90677 -3.94618 3.36948 3.40361 3.42700 3.45568 3.52703 3.83639 4.43836 4.52039 4.53131 4.60455 4.69474 4.86854 4.94891 5.04718 5.09247 5.17367 5.28417 5.32589 5.38991 5.42376 5.44116 5.44304 5.50444 5.56193 5.61508 5.75527 5.76053 5.79791 5.84917 5.91016 5.94352 6.02889 6.08197 6.21528 6.34722 6.37190 6.81214 6.90783 6.98048 7.01539 7.81048 7.94611 8.12276 8.14504 8.45997 8.94946 9.14883 9.68525 11.20365 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021949 B = 0.003223 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.375765 B = 8686.675871 C = 9400.042540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.069 3.931 3 H 0.089 0.911 4 C 0.128 3.872 5 N -0.731 5.731 6 C 0.508 3.492 7 O -0.542 6.542 8 C -0.129 4.129 9 C 0.037 3.963 10 C -0.525 4.525 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.891 5.891 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 N -0.529 5.529 19 C 0.050 3.950 20 C -0.118 4.118 21 C -0.115 4.115 22 C -0.090 4.090 23 H 0.080 0.920 24 C -0.146 4.146 25 C 0.061 3.939 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.404 0.596 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.260 0.740 37 H 0.034 0.966 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.072 0.928 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.866 7.978 20.518 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.039 4.039 3 H 0.107 0.893 4 C 0.003 3.997 5 N -0.386 5.386 6 C 0.296 3.704 7 O -0.419 6.419 8 C -0.169 4.169 9 C 0.000 4.000 10 C -0.563 4.563 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.530 5.530 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 N -0.252 5.252 19 C -0.078 4.078 20 C -0.156 4.156 21 C -0.152 4.152 22 C -0.109 4.109 23 H 0.098 0.902 24 C -0.204 4.204 25 C -0.067 4.067 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.238 0.762 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -15.765 7.535 19.612 26.267 hybrid contribution 0.252 0.097 0.403 0.485 sum -15.513 7.632 20.016 26.449 Atomic orbital electron populations 1.22387 0.96736 1.02654 1.02563 1.21975 0.93265 0.98651 0.90057 0.89291 1.21265 0.82252 1.00206 0.95940 1.46021 1.06392 1.61607 1.24533 1.21522 0.91441 0.76207 0.81240 1.90655 1.70727 1.47118 1.33362 1.21827 0.88470 1.02693 1.03887 1.18885 0.94771 0.95808 0.90544 1.21247 0.92091 1.37485 1.05523 0.92626 1.25028 0.98320 0.95620 0.95478 1.70000 1.35412 1.38391 1.09148 0.86598 0.85825 0.78381 0.77185 1.20705 1.21277 1.19888 1.62072 1.59539 1.02198 1.01440 1.22170 0.96877 0.88993 0.99732 1.21582 1.02007 0.98236 0.93731 1.21639 1.00548 0.95279 0.97777 1.21171 1.01304 0.94712 0.93718 0.90151 1.21794 1.01157 1.00222 0.97216 1.22138 0.97707 0.97512 0.89370 0.91582 0.92013 0.92183 0.92026 0.91609 0.76156 0.90443 0.90364 0.95923 0.95913 0.93017 0.94794 0.90088 0.90805 0.91645 0.91936 0.92563 0.92988 0.92488 0.92599 0.90906 0.94787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 8.50 37.16 0.32 -1.15 16 2 C 0.07 0.64 2.51 -67.71 -0.17 0.47 16 3 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 4 C 0.13 1.62 4.69 -4.04 -0.02 1.60 16 5 N -0.73 -10.75 5.39 -60.30 -0.32 -11.07 16 6 C 0.51 10.13 7.83 -10.99 -0.09 10.04 16 7 O -0.54 -13.20 15.98 5.56 0.09 -13.11 16 8 C -0.13 -2.72 5.64 -27.88 -0.16 -2.87 16 9 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 10 C -0.53 -15.22 9.11 -34.44 -0.31 -15.53 16 11 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.92 13.29 55.43 0.74 -27.19 16 14 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 N -0.53 -4.88 4.08 -226.69 -0.93 -5.80 16 19 C 0.05 0.48 4.63 -3.83 -0.02 0.46 16 20 C -0.12 -1.06 6.09 -26.65 -0.16 -1.22 16 21 C -0.11 -0.88 5.29 -26.61 -0.14 -1.02 16 22 C -0.09 -0.68 2.88 -90.54 -0.26 -0.94 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 24 C -0.15 -0.90 9.20 37.15 0.34 -0.56 16 25 C 0.06 0.47 4.31 -3.84 -0.02 0.46 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.52 6.52 -51.93 -0.34 0.18 16 28 H 0.06 0.43 6.65 -51.93 -0.35 0.09 16 29 H 0.06 0.85 6.56 -51.93 -0.34 0.51 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.40 5.13 8.14 -40.82 -0.33 4.80 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.03 0.31 6.62 -51.93 -0.34 -0.03 16 38 H 0.08 0.94 6.14 -51.93 -0.32 0.62 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 45 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.54 8.08 -51.93 -0.42 0.13 16 47 H 0.03 0.26 6.73 -51.93 -0.35 -0.09 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -33.41 363.47 -9.54 -42.94 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.66 Total: -0.48 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -0.90 Total: -7.75 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.51 Total: -44.06 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.41 -9.54 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330895107.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.261 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds