Wall clock time and date at job start Tue Mar 31 2020 06:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47421 * 2 1 4 4 C 1.52997 * 109.47556 * 120.00345 * 2 1 3 5 5 N 1.46496 * 109.47041 * 294.57986 * 4 2 1 6 6 C 1.34777 * 119.99987 * 174.96666 * 5 4 2 7 7 O 1.21276 * 120.00070 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99922 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.46952 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.46952 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00383 * 0.02562 * 10 9 8 12 12 C 1.37886 * 119.99903 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99939 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99865 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47090 * 90.00381 * 14 12 10 16 16 H 1.48493 * 109.47362 * 210.00442 * 14 12 10 17 17 H 1.48499 * 109.47340 * 330.00490 * 14 12 10 18 18 N 1.46902 * 109.46590 * 240.00505 * 2 1 3 19 19 C 1.46850 * 110.99736 * 299.25437 * 18 2 1 20 20 C 1.53042 * 109.51929 * 174.16319 * 19 18 2 21 21 C 1.53118 * 109.27871 * 59.18520 * 20 19 18 22 22 C 1.53115 * 109.15813 * 302.33848 * 21 20 19 23 23 H 1.09003 * 109.50840 * 297.67751 * 22 21 20 24 24 C 1.53000 * 109.50461 * 177.59577 * 22 21 20 25 25 C 1.46854 * 111.00127 * 175.04924 * 18 2 1 26 26 H 1.09004 * 109.46666 * 299.99744 * 1 2 3 27 27 H 1.08996 * 109.47914 * 59.99739 * 1 2 3 28 28 H 1.09006 * 109.47137 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47339 * 174.57494 * 4 2 1 30 30 H 1.09002 * 109.47322 * 54.57694 * 4 2 1 31 31 H 0.96999 * 120.00411 * 354.96567 * 5 4 2 32 32 H 1.08997 * 109.47216 * 60.00369 * 8 6 5 33 33 H 1.08999 * 109.47310 * 300.00167 * 8 6 5 34 34 H 1.08999 * 109.47279 * 300.00222 * 9 8 6 35 35 H 1.09000 * 109.47268 * 60.00782 * 9 8 6 36 36 H 0.96995 * 119.99661 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.46524 * 294.17247 * 19 18 2 38 38 H 1.08994 * 109.46250 * 54.16039 * 19 18 2 39 39 H 1.09006 * 109.50094 * 179.12115 * 20 19 18 40 40 H 1.08998 * 109.50509 * 299.19492 * 20 19 18 41 41 H 1.08996 * 109.52580 * 62.25020 * 21 20 19 42 42 H 1.09007 * 109.52051 * 182.37778 * 21 20 19 43 43 H 1.09003 * 109.46990 * 60.00511 * 24 22 21 44 44 H 1.09002 * 109.47422 * 179.97438 * 24 22 21 45 45 H 1.08997 * 109.47156 * 300.00687 * 24 22 21 46 46 H 1.09001 * 109.45553 * 305.85478 * 25 18 2 47 47 H 1.09002 * 109.46133 * 65.81670 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6612 0.0404 2.4418 6 6 1.9166 -0.4567 3.6682 7 8 2.4605 -1.5344 3.7844 8 6 1.5274 0.3271 4.8950 9 6 1.9258 -0.4555 6.1479 10 6 1.5372 0.3287 7.3747 11 1 1.0540 1.2890 7.2712 12 6 1.7977 -0.1804 8.6294 13 7 2.3856 -1.3499 8.7555 14 14 1.3153 0.7913 10.1501 15 1 -0.0636 0.4202 10.5578 16 1 2.2582 0.4821 11.2548 17 1 1.3677 2.2440 9.8466 18 7 2.0195 -0.6924 -1.1996 19 6 1.5632 -2.0880 -1.2246 20 6 1.9670 -2.7343 -2.5518 21 6 3.4896 -2.6729 -2.7014 22 6 3.9437 -1.2127 -2.6234 23 1 3.5067 -0.6510 -3.4491 24 6 5.4697 -1.1469 -2.7120 25 6 3.4827 -0.6105 -1.2943 26 1 -0.3633 0.5138 0.8901 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1257 -0.8062 1.2018 30 1 1.5996 -1.7171 1.2990 31 1 1.2266 0.9026 2.3489 32 1 0.4495 0.4892 4.8959 33 1 2.0395 1.2893 4.8890 34 1 1.4134 -1.4175 6.1536 35 1 3.0037 -0.6179 6.1474 36 1 2.5692 -1.7078 9.6381 37 1 2.0212 -2.6348 -0.4003 38 1 0.4785 -2.1173 -1.1218 39 1 1.6418 -3.7746 -2.5638 40 1 1.4977 -2.1969 -3.3759 41 1 3.9577 -3.2434 -1.8993 42 1 3.7782 -3.0941 -3.6645 43 1 5.7978 -1.5791 -3.6574 44 1 5.7924 -0.1072 -2.6569 45 1 5.9061 -1.7075 -1.8854 46 1 3.7920 0.4334 -1.2417 47 1 3.9316 -1.1641 -0.4695 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330895108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:17 Heat of formation + Delta-G solvation = -64.386401 kcal Electronic energy + Delta-G solvation = -22577.393887 eV Core-core repulsion = 19372.767768 eV Total energy + Delta-G solvation = -3204.626119 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.12408 -38.89215 -36.20671 -33.68974 -33.43383 -32.20680 -31.03198 -30.22118 -27.12805 -26.64978 -25.19598 -24.27320 -22.59713 -21.57178 -20.46458 -19.71277 -19.36064 -16.97950 -16.29158 -15.91849 -15.60215 -15.46007 -15.26652 -14.60088 -14.46736 -14.42164 -13.96601 -13.80937 -13.41438 -13.20107 -12.92696 -12.75927 -12.41319 -12.25938 -12.16016 -11.98023 -11.80307 -11.48513 -11.30424 -11.15646 -11.08038 -10.92240 -10.84951 -10.59745 -10.49866 -10.47601 -9.95110 -9.66000 -9.19670 -9.04379 -8.77173 -8.48458 -8.31571 -5.95676 -4.00072 3.27015 3.33493 3.37802 3.40294 3.42908 3.78881 4.42532 4.48000 4.50751 4.56087 4.73576 4.75577 4.93148 5.07279 5.10464 5.16949 5.28871 5.34813 5.39196 5.43266 5.46988 5.49465 5.52787 5.56489 5.65566 5.71156 5.73974 5.78541 5.85648 5.87250 5.94828 6.00418 6.06426 6.17970 6.23683 6.25173 6.65625 6.85602 6.88862 6.90329 7.74857 7.86931 7.89169 8.07823 8.39313 8.79514 9.08671 9.63376 11.15339 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032249 B = 0.002738 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.045530 B =10224.731509 C =10501.346227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 H 0.088 0.912 4 C 0.088 3.912 5 N -0.740 5.740 6 C 0.508 3.492 7 O -0.536 6.536 8 C -0.129 4.129 9 C 0.037 3.963 10 C -0.527 4.527 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 N -0.524 5.524 19 C 0.043 3.957 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.087 4.087 23 H 0.077 0.923 24 C -0.148 4.148 25 C 0.053 3.947 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.397 0.603 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.040 0.960 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.074 0.926 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 2.246 -26.137 26.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 H 0.106 0.894 4 C -0.038 4.038 5 N -0.395 5.395 6 C 0.297 3.703 7 O -0.411 6.411 8 C -0.169 4.169 9 C -0.001 4.001 10 C -0.565 4.565 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.529 5.529 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 N -0.248 5.248 19 C -0.084 4.084 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.106 4.106 23 H 0.095 0.905 24 C -0.206 4.206 25 C -0.074 4.074 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.231 0.769 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.093 0.907 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.311 1.546 -26.329 26.376 hybrid contribution -0.054 0.445 1.562 1.625 sum -0.365 1.991 -24.767 24.850 Atomic orbital electron populations 1.21893 0.93634 1.02538 1.02251 1.21942 0.96422 0.98389 0.87057 0.89384 1.21988 1.00006 0.96529 0.85280 1.46124 1.64271 1.23564 1.05534 1.21590 0.77485 0.86674 0.84580 1.90664 1.41572 1.22210 1.86687 1.21859 1.01840 0.99892 0.93358 1.18894 0.97674 0.95048 0.88440 1.21228 1.39564 1.04709 0.91017 0.92599 1.25034 0.95233 0.95023 0.99146 1.69998 1.41902 1.17644 1.23319 0.86584 0.78290 0.80277 0.82758 1.20668 1.21221 1.19887 1.62267 1.10812 1.14829 1.36866 1.22244 1.00867 0.88082 0.97244 1.21574 0.95964 1.00169 0.97641 1.21664 0.95867 0.96256 1.01770 1.21144 0.95431 0.96270 0.97778 0.90453 1.21808 0.95046 1.01877 1.01835 1.22228 0.87269 1.01030 0.96922 0.91783 0.91625 0.92273 0.92240 0.91589 0.76917 0.90257 0.90262 0.95873 0.95876 0.92955 0.94215 0.90181 0.91567 0.91211 0.92130 0.91896 0.92506 0.92545 0.92634 0.90714 0.94174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.87 37.16 0.33 -0.94 16 2 C 0.07 0.68 2.45 -67.72 -0.17 0.52 16 3 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 4 C 0.09 1.13 4.33 -4.05 -0.02 1.12 16 5 N -0.74 -10.47 5.22 -60.30 -0.31 -10.79 16 6 C 0.51 9.97 7.83 -10.99 -0.09 9.88 16 7 O -0.54 -13.00 15.98 5.56 0.09 -12.91 16 8 C -0.13 -2.66 5.64 -27.88 -0.16 -2.81 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 11 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.70 13.29 55.43 0.74 -26.96 16 14 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 18 N -0.52 -4.94 4.64 -226.68 -1.05 -5.99 16 19 C 0.04 0.40 4.64 -3.83 -0.02 0.39 16 20 C -0.12 -0.92 6.09 -26.65 -0.16 -1.08 16 21 C -0.12 -0.92 5.29 -26.61 -0.14 -1.06 16 22 C -0.09 -0.69 2.88 -90.54 -0.26 -0.95 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 24 C -0.15 -1.05 9.20 37.16 0.34 -0.71 16 25 C 0.05 0.49 4.31 -3.83 -0.02 0.48 16 26 H 0.06 0.54 7.32 -51.93 -0.38 0.16 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.54 6.30 -51.93 -0.33 0.22 16 29 H 0.06 0.85 6.40 -51.93 -0.33 0.51 16 30 H 0.07 0.96 6.83 -51.93 -0.35 0.61 16 31 H 0.40 4.36 7.86 -40.82 -0.32 4.04 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.04 0.43 6.75 -51.93 -0.35 0.08 16 38 H 0.08 0.72 6.03 -51.93 -0.31 0.40 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 47 H 0.04 0.43 6.61 -51.93 -0.34 0.09 16 LS Contribution 362.40 15.07 5.46 5.46 Total: -1.00 -33.66 362.40 -9.58 -43.24 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.59 Total: -0.71 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -0.88 Total: -8.12 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.63 Total: -43.74 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.66 -9.58 -43.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330895108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.150 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds