Wall clock time and date at job start Tue Mar 31 2020 06:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.53468 * 2 1 4 4 C 1.53119 * 109.50065 * 239.90333 * 2 1 3 5 5 C 1.53119 * 109.16027 * 182.40149 * 4 2 1 6 6 H 1.09006 * 109.54107 * 177.61557 * 5 4 2 7 7 C 1.53003 * 109.50548 * 297.71206 * 5 4 2 8 8 C 1.53036 * 109.27818 * 57.65243 * 5 4 2 9 9 N 1.46848 * 109.52752 * 300.82154 * 8 5 4 10 10 C 1.46890 * 111.00393 * 185.83722 * 9 8 5 11 11 C 1.52998 * 109.47284 * 169.99924 * 10 9 8 12 12 C 1.53004 * 109.47401 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.46910 * 180.02562 * 12 11 10 14 14 N 1.46508 * 109.46952 * 180.02562 * 13 12 11 15 15 C 1.34770 * 120.00128 * 179.97438 * 14 13 12 16 16 O 1.21693 * 120.00233 * 0.02562 * 15 14 13 17 17 C 1.46377 * 120.00195 * 179.97438 * 15 14 13 18 18 H 1.08003 * 119.99382 * 6.25483 * 17 15 14 19 19 C 1.40045 * 119.99996 * 186.24760 * 17 15 14 20 20 N 1.30678 * 119.99940 * 184.67776 * 19 17 15 21 21 Si 1.86798 * 120.00594 * 4.67792 * 19 17 15 22 22 H 1.48497 * 109.47673 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47084 * 59.99720 * 21 19 17 24 24 H 1.48511 * 109.46705 * 300.00253 * 21 19 17 25 25 C 1.46848 * 111.19281 * 61.73812 * 9 8 5 26 26 H 1.09005 * 109.46406 * 180.09980 * 1 2 3 27 27 H 1.08994 * 109.46868 * 300.09459 * 1 2 3 28 28 H 1.08994 * 109.46983 * 60.10115 * 1 2 3 29 29 H 1.09003 * 109.52906 * 62.49889 * 4 2 1 30 30 H 1.09001 * 109.52665 * 302.30386 * 4 2 1 31 31 H 1.08999 * 109.47222 * 179.80086 * 7 5 4 32 32 H 1.08991 * 109.47106 * 299.80443 * 7 5 4 33 33 H 1.09007 * 109.46690 * 59.80280 * 7 5 4 34 34 H 1.09005 * 109.46621 * 180.80604 * 8 5 4 35 35 H 1.09000 * 109.46574 * 60.83843 * 8 5 4 36 36 H 1.09000 * 109.47407 * 50.00137 * 10 9 8 37 37 H 1.09004 * 109.47377 * 289.99937 * 10 9 8 38 38 H 1.09002 * 109.47206 * 60.00373 * 11 10 9 39 39 H 1.08999 * 109.47555 * 299.99987 * 11 10 9 40 40 H 1.08998 * 109.46901 * 60.00444 * 12 11 10 41 41 H 1.08996 * 109.46975 * 299.99989 * 12 11 10 42 42 H 1.09002 * 109.47623 * 60.00410 * 13 12 11 43 43 H 1.08999 * 109.47629 * 299.99724 * 13 12 11 44 44 H 0.97002 * 120.00025 * 359.97438 * 14 13 12 45 45 H 0.97007 * 119.99648 * 354.89991 * 20 19 17 46 46 H 1.09004 * 109.46337 * 58.27927 * 25 9 8 47 47 H 1.09001 * 109.45838 * 178.24392 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2488 5 6 3.5712 -0.7719 -1.2109 6 1 3.9402 -1.3230 -2.0759 7 6 4.1279 0.6530 -1.2377 8 6 4.0230 -1.4729 0.0723 9 7 3.5094 -0.7420 1.2378 10 6 4.0374 -1.3058 2.4873 11 6 3.6878 -0.3785 3.6530 12 6 4.2383 -0.9653 4.9543 13 6 3.8881 -0.0383 6.1200 14 7 4.4157 -0.5999 7.3661 15 6 4.2269 0.0502 8.5314 16 8 3.6177 1.1036 8.5488 17 6 4.7536 -0.5111 9.7764 18 1 5.3788 -1.3914 9.7498 19 6 4.4470 0.0933 11.0019 20 7 4.9900 -0.3518 12.1040 21 14 3.2617 1.5359 11.0614 22 1 3.1071 1.9920 12.4660 23 1 1.9412 1.1138 10.5292 24 1 3.7952 2.6491 10.2357 25 6 2.0411 -0.7234 1.2480 26 1 -0.3632 -1.0278 0.0018 27 1 -0.3633 0.5153 0.8891 28 1 -0.3633 0.5122 -0.8908 29 1 1.7157 -0.1871 -2.1399 30 1 1.6453 -1.7392 -1.2690 31 1 5.2169 0.6183 -1.2071 32 1 3.8058 1.1518 -2.1516 33 1 3.7575 1.2041 -0.3731 34 1 5.1122 -1.4961 0.1093 35 1 3.6376 -2.4924 0.0842 36 1 5.1205 -1.4032 2.4128 37 1 3.5952 -2.2872 2.6585 38 1 2.6047 -0.2811 3.7275 39 1 4.1300 0.6030 3.4818 40 1 5.3214 -1.0624 4.8796 41 1 3.7965 -1.9469 5.1258 42 1 2.8049 0.0584 6.1947 43 1 4.3296 0.9434 5.9489 44 1 4.9010 -1.4397 7.3524 45 1 5.5468 -1.1460 12.0840 46 1 1.6649 -1.7465 1.2543 47 1 1.6907 -0.2023 2.1389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331042180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:13 Heat of formation + Delta-G solvation = -86.789994 kcal Electronic energy + Delta-G solvation = -22204.763030 eV Core-core repulsion = 18999.165418 eV Total energy + Delta-G solvation = -3205.597612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.90780 -37.93385 -36.09405 -34.26295 -33.44306 -32.82327 -31.77286 -28.05437 -27.08795 -26.90392 -25.96066 -24.06207 -21.96605 -21.56033 -20.88619 -19.65925 -18.98949 -17.91745 -16.27389 -15.96085 -15.30185 -15.14239 -15.05226 -14.88055 -14.52677 -14.26799 -13.87002 -13.67625 -13.54996 -13.11674 -12.75334 -12.59886 -12.34878 -12.32811 -12.11703 -11.99561 -11.83102 -11.68280 -11.40046 -11.29683 -11.21409 -10.95518 -10.75399 -10.60162 -10.49764 -10.32694 -10.20336 -10.14959 -9.17797 -8.93917 -8.49903 -7.90311 -7.86207 -6.95611 -4.89112 3.60696 3.62046 3.72166 4.11209 4.36466 4.39327 4.43861 4.49526 4.56594 4.68237 4.76336 4.90236 4.95391 5.02136 5.13179 5.21258 5.27296 5.32436 5.34454 5.39908 5.43407 5.45602 5.48146 5.52722 5.54665 5.62720 5.68251 5.71864 5.79982 5.80754 5.88262 5.89785 5.99628 6.02530 6.07776 6.20099 6.27131 6.47849 6.49404 6.90095 6.90119 7.53765 7.74182 7.79767 8.14300 8.87324 9.12167 10.10973 10.36705 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033125 B = 0.002571 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.073372 B =10889.250880 C =11324.052945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 H 0.082 0.918 4 C -0.111 4.111 5 C -0.090 4.090 6 H 0.069 0.931 7 C -0.140 4.140 8 C 0.060 3.940 9 N -0.536 5.536 10 C 0.058 3.942 11 C -0.112 4.112 12 C -0.127 4.127 13 C 0.130 3.870 14 N -0.758 5.758 15 C 0.551 3.449 16 O -0.619 6.619 17 C -0.600 4.600 18 H 0.069 0.931 19 C 0.059 3.941 20 N -0.835 5.835 21 Si 1.132 2.868 22 H -0.323 1.323 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.057 3.943 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.032 0.968 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.386 0.614 45 H 0.276 0.724 46 H 0.030 0.970 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.103 -3.703 -28.159 28.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 H 0.100 0.900 4 C -0.149 4.149 5 C -0.108 4.108 6 H 0.088 0.912 7 C -0.197 4.197 8 C -0.068 4.068 9 N -0.260 5.260 10 C -0.070 4.070 11 C -0.150 4.150 12 C -0.166 4.166 13 C 0.005 3.995 14 N -0.410 5.410 15 C 0.359 3.641 16 O -0.513 6.513 17 C -0.636 4.636 18 H 0.087 0.913 19 C -0.158 4.158 20 N -0.463 5.463 21 Si 0.965 3.035 22 H -0.255 1.255 23 H -0.219 1.219 24 H -0.208 1.208 25 C -0.071 4.071 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.218 0.782 45 H 0.087 0.913 46 H 0.048 0.952 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.957 -1.480 -27.201 27.688 hybrid contribution 0.857 -2.788 -1.098 3.117 sum -4.100 -4.268 -28.299 28.911 Atomic orbital electron populations 1.21806 0.95075 1.01722 1.01937 1.21210 0.94982 1.00638 0.94171 0.89984 1.21682 0.95058 1.00265 0.97848 1.21169 0.95505 0.97514 0.96644 0.91217 1.21758 1.00384 0.95744 1.01805 1.22101 0.99824 0.94559 0.90308 1.61868 1.07975 1.54103 1.02017 1.22117 1.00025 0.95927 0.88939 1.21507 1.01317 0.99644 0.92526 1.21740 1.01251 0.99413 0.94187 1.20966 0.98477 0.96249 0.83823 1.45765 1.61900 1.26744 1.06559 1.18453 0.78901 0.83354 0.83402 1.90138 1.50124 1.25963 1.85027 1.22052 1.34381 1.15916 0.91260 0.91274 1.27171 0.96130 1.01824 0.90655 1.70662 1.24979 1.20864 1.29764 0.82356 0.75110 0.75019 0.71044 1.25498 1.21928 1.20809 1.22218 0.87313 0.98868 0.98717 0.92914 0.92380 0.92538 0.91888 0.92455 0.93143 0.93587 0.91007 0.90837 0.95224 0.90778 0.95014 0.91772 0.90825 0.91672 0.91915 0.93110 0.92985 0.78193 0.91289 0.95164 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.20 37.16 0.34 -0.69 16 2 C -0.09 -0.72 2.53 -90.54 -0.23 -0.95 16 3 H 0.08 0.71 6.58 -51.93 -0.34 0.37 16 4 C -0.11 -0.80 4.79 -26.61 -0.13 -0.92 16 5 C -0.09 -0.66 3.21 -90.54 -0.29 -0.95 16 6 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 7 C -0.14 -1.08 8.75 37.16 0.33 -0.75 16 8 C 0.06 0.50 4.90 -3.83 -0.02 0.48 16 9 N -0.54 -5.08 3.94 -234.68 -0.92 -6.01 16 10 C 0.06 0.57 4.96 -3.83 -0.02 0.55 16 11 C -0.11 -1.25 5.14 -26.73 -0.14 -1.39 16 12 C -0.13 -1.65 5.33 -26.73 -0.14 -1.80 16 13 C 0.13 2.34 5.67 -4.04 -0.02 2.32 16 14 N -0.76 -16.46 5.55 -61.72 -0.34 -16.80 16 15 C 0.55 15.10 7.57 -12.99 -0.10 15.00 16 16 O -0.62 -18.39 12.07 5.19 0.06 -18.32 16 17 C -0.60 -17.36 9.96 -35.63 -0.36 -17.71 16 18 H 0.07 1.96 8.05 -52.48 -0.42 1.54 16 19 C 0.06 1.75 5.52 -17.37 -0.10 1.66 16 20 N -0.84 -24.59 13.64 55.55 0.76 -23.83 16 21 Si 1.13 30.65 25.99 -169.99 -4.42 26.23 16 22 H -0.32 -8.38 7.11 56.52 0.40 -7.98 16 23 H -0.29 -7.92 7.11 56.52 0.40 -7.52 16 24 H -0.28 -7.84 6.78 56.52 0.38 -7.46 16 25 C 0.06 0.52 4.57 -3.84 -0.02 0.50 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.65 6.01 -51.93 -0.31 0.34 16 34 H 0.07 0.60 8.02 -51.93 -0.42 0.18 16 35 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.71 7.99 -51.93 -0.41 0.29 16 37 H 0.03 0.32 8.12 -51.93 -0.42 -0.11 16 38 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.39 7.42 8.45 -40.82 -0.35 7.08 16 45 H 0.28 7.80 8.72 -40.82 -0.36 7.45 16 46 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.08 0.78 6.21 -51.93 -0.32 0.45 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -32.02 361.01 -9.15 -41.18 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -8.84 Total: -3.22 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -0.89 Total: -4.66 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.51 Total: -46.64 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.06 Total: -18.32 kcal Atomic # 14 Polarization: 30.65 SS G_CDS: -4.42 Total: 26.23 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.02 -9.15 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331042180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.613 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds