Wall clock time and date at job start Tue Mar 31 2020 06:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.50654 * 2 1 4 4 C 1.53120 * 109.53392 * 120.09352 * 2 1 3 5 5 C 1.53125 * 109.15853 * 62.31107 * 4 2 1 6 6 H 1.08999 * 109.50020 * 297.70949 * 5 4 2 7 7 C 1.53002 * 109.53292 * 177.61311 * 5 4 2 8 8 C 1.53029 * 109.27934 * 57.65119 * 5 4 2 9 9 N 1.46849 * 109.52699 * 300.82145 * 8 5 4 10 10 C 1.46894 * 111.00248 * 185.84374 * 9 8 5 11 11 C 1.52994 * 109.47425 * 45.78704 * 10 9 8 12 12 C 1.53005 * 109.47129 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.46779 * 180.02562 * 12 11 10 14 14 N 1.46498 * 109.46602 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99769 * 179.97438 * 14 13 12 16 16 O 1.21689 * 120.00536 * 359.97438 * 15 14 13 17 17 C 1.46380 * 120.00005 * 180.02562 * 15 14 13 18 18 H 1.08001 * 119.99948 * 353.93445 * 17 15 14 19 19 C 1.40049 * 119.99901 * 173.94324 * 17 15 14 20 20 N 1.30671 * 120.00137 * 6.14146 * 19 17 15 21 21 Si 1.86803 * 119.99755 * 186.14938 * 19 17 15 22 22 H 1.48501 * 109.47239 * 94.98106 * 21 19 17 23 23 H 1.48500 * 109.46953 * 214.97885 * 21 19 17 24 24 H 1.48497 * 109.47330 * 334.98001 * 21 19 17 25 25 C 1.46849 * 111.19601 * 61.73967 * 9 8 5 26 26 H 1.09000 * 109.47136 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47128 * 300.00145 * 1 2 3 28 28 H 1.08999 * 109.47065 * 59.99896 * 1 2 3 29 29 H 1.09003 * 109.52078 * 182.21072 * 4 2 1 30 30 H 1.08991 * 109.52801 * 302.39990 * 4 2 1 31 31 H 1.08990 * 109.47284 * 300.17265 * 7 5 4 32 32 H 1.09003 * 109.46888 * 60.17799 * 7 5 4 33 33 H 1.09004 * 109.46646 * 180.17239 * 7 5 4 34 34 H 1.09000 * 109.46187 * 180.80574 * 8 5 4 35 35 H 1.08998 * 109.45851 * 60.83537 * 8 5 4 36 36 H 1.09002 * 109.47379 * 165.79245 * 10 9 8 37 37 H 1.09000 * 109.47107 * 285.78464 * 10 9 8 38 38 H 1.08999 * 109.47333 * 300.00076 * 11 10 9 39 39 H 1.09000 * 109.47063 * 60.00581 * 11 10 9 40 40 H 1.08999 * 109.47121 * 300.00262 * 12 11 10 41 41 H 1.09000 * 109.46628 * 60.00371 * 12 11 10 42 42 H 1.08999 * 109.47402 * 299.99960 * 13 12 11 43 43 H 1.09000 * 109.47344 * 60.00680 * 13 12 11 44 44 H 0.96999 * 120.00457 * 0.02562 * 14 13 12 45 45 H 0.97000 * 119.99952 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.46084 * 178.24180 * 25 9 8 47 47 H 1.08998 * 109.45044 * 58.27688 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0419 -0.7236 1.2486 5 6 1.5765 -2.1819 1.2106 6 1 0.4873 -2.2168 1.2300 7 6 2.1333 -2.9283 2.4246 8 6 2.0861 -2.8416 -0.0727 9 7 1.5683 -2.1133 -1.2381 10 6 1.9230 -2.7992 -2.4877 11 6 1.6418 -4.2963 -2.3455 12 6 2.0107 -5.0105 -3.6474 13 6 1.7288 -6.5076 -3.5052 14 7 2.0825 -7.1915 -4.7516 15 6 1.9180 -8.5249 -4.8587 16 8 1.4761 -9.1608 -3.9200 17 6 2.2720 -9.2083 -6.1038 18 1 2.5717 -8.6346 -6.9683 19 6 2.2219 -10.6061 -6.1740 20 7 1.7456 -11.2941 -5.1703 21 14 2.8360 -11.4871 -7.7024 22 1 4.2478 -11.9014 -7.5014 23 1 1.9986 -12.6879 -7.9517 24 1 2.7498 -10.5726 -8.8692 25 6 2.0409 -0.7230 -1.2482 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.1313 -0.6893 1.2684 30 1 1.6450 -0.2376 2.1397 31 1 3.2224 -2.8919 2.4054 32 1 1.7699 -2.4580 3.3383 33 1 1.8039 -3.9670 2.3948 34 1 1.7444 -3.8760 -0.1097 35 1 3.1758 -2.8185 -0.0849 36 1 1.3281 -2.3938 -3.3062 37 1 2.9816 -2.6467 -2.6980 38 1 2.2368 -4.7016 -1.5271 39 1 0.5832 -4.4487 -2.1353 40 1 1.4153 -4.6050 -4.4654 41 1 3.0692 -4.8580 -3.8580 42 1 2.3238 -6.9133 -2.6871 43 1 0.6701 -6.6597 -3.2948 44 1 2.4358 -6.6848 -5.4994 45 1 1.7112 -12.2622 -5.2188 46 1 1.6664 -0.2187 -2.1389 47 1 3.1308 -0.7101 -1.2549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331042181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:16 Heat of formation + Delta-G solvation = -68.546614 kcal Electronic energy + Delta-G solvation = -22169.653498 eV Core-core repulsion = 18964.846979 eV Total energy + Delta-G solvation = -3204.806519 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.88469 -37.40747 -35.94633 -34.00562 -33.38292 -32.42893 -31.37131 -27.87403 -27.04529 -26.85223 -25.99794 -24.13968 -21.94412 -21.51061 -20.58929 -19.51847 -18.96380 -17.11942 -16.16170 -15.82274 -15.26927 -15.13989 -14.88040 -14.72939 -14.22435 -14.18323 -13.98116 -13.67934 -13.46050 -12.97854 -12.52051 -12.42023 -12.18314 -12.11457 -11.92520 -11.85462 -11.54120 -11.41084 -11.27057 -11.12082 -11.00009 -10.84266 -10.82519 -10.67505 -10.47193 -10.42423 -10.33746 -10.18801 -10.10299 -8.82033 -8.40809 -7.57143 -7.44298 -6.16248 -4.60235 3.15621 3.22537 3.26292 3.70401 4.13341 4.42844 4.52068 4.61189 4.62539 4.75109 4.88025 5.00718 5.02745 5.10176 5.20223 5.29442 5.36421 5.41002 5.43607 5.47309 5.51550 5.52916 5.58246 5.62031 5.70459 5.76697 5.79710 5.85271 5.86207 5.88489 5.94838 6.01621 6.08496 6.10992 6.17468 6.28201 6.32374 6.66664 6.67936 6.96951 6.97546 7.46669 7.98070 8.15849 8.37456 9.05719 9.58984 10.63670 10.82656 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037833 B = 0.002425 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.915106 B =11545.017486 C =11981.709222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.091 4.091 6 H 0.081 0.919 7 C -0.148 4.148 8 C 0.052 3.948 9 N -0.536 5.536 10 C 0.058 3.942 11 C -0.119 4.119 12 C -0.126 4.126 13 C 0.134 3.866 14 N -0.769 5.769 15 C 0.554 3.446 16 O -0.582 6.582 17 C -0.547 4.547 18 H 0.067 0.933 19 C 0.087 3.913 20 N -0.769 5.769 21 Si 0.908 3.092 22 H -0.273 1.273 23 H -0.279 1.279 24 H -0.265 1.265 25 C 0.060 3.940 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.030 0.970 36 H 0.075 0.925 37 H 0.031 0.969 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.379 0.621 45 H 0.268 0.732 46 H 0.073 0.927 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 22.628 10.233 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.110 4.110 6 H 0.099 0.901 7 C -0.206 4.206 8 C -0.075 4.075 9 N -0.260 5.260 10 C -0.070 4.070 11 C -0.157 4.157 12 C -0.164 4.164 13 C 0.009 3.991 14 N -0.425 5.425 15 C 0.357 3.643 16 O -0.465 6.465 17 C -0.584 4.584 18 H 0.086 0.914 19 C -0.132 4.132 20 N -0.398 5.398 21 Si 0.732 3.268 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.189 1.189 25 C -0.068 4.068 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.210 0.790 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.343 21.981 11.052 24.605 hybrid contribution 1.459 -0.145 -1.203 1.896 sum 1.802 21.836 9.849 24.022 Atomic orbital electron populations 1.21754 0.94405 1.02942 1.00556 1.21163 0.96985 0.98307 0.94364 0.91271 1.21683 1.00172 0.95458 0.97548 1.21216 1.01389 0.94432 0.93979 0.90056 1.21807 1.00894 1.00496 0.97366 1.22298 0.96968 0.98622 0.89659 1.61945 1.59890 1.01750 1.02388 1.22142 0.98643 0.94456 0.91736 1.21667 1.02677 0.93324 0.98047 1.21738 1.01425 0.95804 0.97479 1.20841 0.99446 0.89591 0.89264 1.46137 1.72423 1.09373 1.14556 1.18229 0.77954 0.78930 0.89145 1.90592 1.49462 1.64826 1.41670 1.20900 1.48775 0.91507 0.97240 0.91437 1.25714 0.93086 0.97717 0.96724 1.70033 1.33000 1.06968 1.29773 0.86367 0.79087 0.79150 0.82174 1.19836 1.20465 1.18908 1.22097 0.96989 0.89322 0.98387 0.91000 0.93622 0.93184 0.92454 0.91946 0.92896 0.92600 0.92321 0.89657 0.95143 0.90641 0.95032 0.91562 0.90835 0.91723 0.92020 0.93674 0.93494 0.78956 0.92158 0.90899 0.95190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.75 37.16 0.33 -0.79 16 2 C -0.09 -0.70 3.21 -90.54 -0.29 -0.99 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.11 -0.86 4.79 -26.60 -0.13 -0.99 16 5 C -0.09 -0.78 2.53 -90.54 -0.23 -1.01 16 6 H 0.08 0.75 6.58 -51.93 -0.34 0.41 16 7 C -0.15 -1.15 9.20 37.16 0.34 -0.81 16 8 C 0.05 0.52 4.13 -3.84 -0.02 0.50 16 9 N -0.54 -5.42 4.09 -234.69 -0.96 -6.38 16 10 C 0.06 0.61 5.27 -3.83 -0.02 0.59 16 11 C -0.12 -1.43 4.46 -26.73 -0.12 -1.55 16 12 C -0.13 -1.76 5.33 -26.73 -0.14 -1.90 16 13 C 0.13 2.61 5.67 -4.04 -0.02 2.59 16 14 N -0.77 -17.69 5.55 -61.72 -0.34 -18.03 16 15 C 0.55 16.22 7.74 -12.98 -0.10 16.12 16 16 O -0.58 -19.43 15.04 5.20 0.08 -19.35 16 17 C -0.55 -15.79 9.53 -35.63 -0.34 -16.13 16 18 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 19 C 0.09 2.48 5.49 -17.37 -0.10 2.38 16 20 N -0.77 -23.52 11.85 55.55 0.66 -22.86 16 21 Si 0.91 20.41 29.56 -169.99 -5.03 15.39 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 25 C 0.06 0.53 4.86 -3.84 -0.02 0.51 16 26 H 0.07 0.67 6.01 -51.93 -0.31 0.36 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.90 5.81 -51.93 -0.30 0.60 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 38 H 0.07 0.81 6.21 -51.93 -0.32 0.48 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.38 7.60 8.45 -40.82 -0.35 7.25 16 45 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 46 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 47 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 364.10 15.07 5.49 5.49 Total: -1.00 -34.02 364.10 -9.73 -43.76 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.78 Total: 3.45 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -0.85 Total: -1.47 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.64 Total: -47.27 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.08 Total: -19.35 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.02 -9.73 -43.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331042181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.789 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds