Wall clock time and date at job start Tue Mar 31 2020 06:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.21199 * 2 1 4 4 C 1.52524 * 110.25226 * 238.06976 * 2 1 3 5 5 C 1.46235 * 114.28439 * 151.47523 * 4 2 1 6 6 N 1.50163 * 107.53094 * 58.40882 * 5 4 2 7 7 C 1.34775 * 120.53782 * 109.56966 * 6 5 4 8 8 O 1.21286 * 120.00064 * 179.97438 * 7 6 5 9 9 C 1.50697 * 119.99977 * 359.97438 * 7 6 5 10 10 H 1.08996 * 109.47188 * 40.00225 * 9 7 6 11 11 N 1.46905 * 109.47125 * 160.00003 * 9 7 6 12 12 C 1.53001 * 109.47213 * 279.99847 * 9 7 6 13 13 C 1.52995 * 109.47332 * 174.99878 * 12 9 7 14 14 C 1.50694 * 109.47452 * 180.02562 * 13 12 9 15 15 H 1.08004 * 119.99671 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00375 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00342 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99936 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47208 * 89.99869 * 18 16 14 20 20 H 1.48490 * 109.47220 * 210.00376 * 18 16 14 21 21 H 1.48499 * 109.46982 * 330.00334 * 18 16 14 22 22 C 1.43440 * 118.92522 * 289.84427 * 6 5 4 23 23 C 1.54403 * 116.39055 * 91.45910 * 22 6 5 24 24 H 1.08993 * 109.24453 * 78.73238 * 23 22 6 25 25 C 1.52999 * 109.44369 * 198.43758 * 23 22 6 26 26 C 1.50121 * 110.37439 * 122.01570 * 2 1 3 27 27 H 1.09003 * 109.46865 * 181.93389 * 1 2 3 28 28 H 1.08999 * 109.46857 * 301.92769 * 1 2 3 29 29 H 1.08991 * 109.47142 * 61.93436 * 1 2 3 30 30 H 1.09010 * 108.52365 * 30.23298 * 4 2 1 31 31 H 1.09002 * 108.52274 * 272.71899 * 4 2 1 32 32 H 1.09003 * 109.84233 * 298.90046 * 5 4 2 33 33 H 1.08996 * 109.90415 * 177.94897 * 5 4 2 34 34 H 1.00901 * 110.99869 * 296.04907 * 11 9 7 35 35 H 1.00896 * 110.99543 * 60.00030 * 11 9 7 36 36 H 1.08997 * 109.47039 * 295.00606 * 12 9 7 37 37 H 1.09001 * 109.46723 * 55.00082 * 12 9 7 38 38 H 1.09001 * 109.46974 * 300.00562 * 13 12 9 39 39 H 1.09004 * 109.46840 * 59.99935 * 13 12 9 40 40 H 0.96996 * 120.00272 * 180.02562 * 17 16 14 41 41 H 1.08998 * 108.15978 * 213.03134 * 22 6 5 42 42 H 1.08995 * 108.16095 * 329.59895 * 22 6 5 43 43 H 1.08994 * 109.47419 * 180.63982 * 25 23 22 44 44 H 1.08998 * 109.47459 * 300.64616 * 25 23 22 45 45 H 1.09006 * 109.47266 * 60.63996 * 25 23 22 46 46 H 1.09007 * 109.20891 * 337.06377 * 26 2 1 47 47 H 1.08998 * 109.21133 * 96.37307 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9066 1.0229 0.0000 4 6 2.0580 -0.7568 -1.2144 5 6 3.3649 -0.3006 -1.6859 6 7 4.3332 -0.4484 -0.5477 7 6 5.2948 -1.3920 -0.5849 8 8 6.0721 -1.5025 0.3396 9 6 5.4043 -2.3097 -1.7752 10 1 5.2242 -1.7431 -2.6887 11 7 6.7509 -2.8953 -1.8197 12 6 4.3660 -3.4271 -1.6549 13 6 4.3921 -4.2860 -2.9207 14 6 3.3691 -5.3861 -2.8026 15 1 2.7613 -5.4650 -1.9133 16 6 3.2096 -6.2925 -3.8293 17 7 2.3171 -7.2528 -3.7259 18 14 4.2613 -6.1564 -5.3671 19 1 5.5026 -6.9519 -5.1899 20 1 3.5026 -6.6757 -6.5331 21 1 4.6147 -4.7331 -5.6006 22 6 4.2144 0.4270 0.5824 23 6 3.3319 -0.0718 1.7470 24 1 3.8934 -0.7940 2.3395 25 6 2.9383 1.1131 2.6314 26 6 2.0526 -0.7461 1.1932 27 1 -0.3633 -1.0271 0.0347 28 1 -0.3633 0.5435 0.8722 29 1 -0.3633 0.4835 -0.9067 30 1 1.3400 -0.6504 -2.0278 31 1 2.1318 -1.8138 -0.9585 32 1 3.3050 0.7452 -1.9875 33 1 3.6889 -0.9107 -2.5290 34 1 7.4505 -2.1827 -1.9637 35 1 6.9421 -3.4261 -0.9833 36 1 4.5988 -4.0478 -0.7897 37 1 3.3749 -2.9903 -1.5326 38 1 4.1593 -3.6651 -3.7859 39 1 5.3833 -4.7227 -3.0431 40 1 2.2052 -7.8907 -4.4480 41 1 5.2141 0.6120 0.9753 42 1 3.8107 1.3778 0.2346 43 1 2.3247 0.7600 3.4601 44 1 3.8375 1.5893 3.0222 45 1 2.3723 1.8344 2.0418 46 1 1.2888 -0.7592 1.9708 47 1 2.2846 -1.7706 0.9023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332043850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:46 Heat of formation + Delta-G solvation = -56.526666 kcal Electronic energy + Delta-G solvation = -24054.905158 eV Core-core repulsion = 20850.619862 eV Total energy + Delta-G solvation = -3204.285295 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.66568 -38.34563 -35.53494 -34.54044 -33.97619 -32.74068 -30.48896 -29.47543 -27.66100 -26.86571 -25.73212 -23.42046 -23.04250 -21.63748 -20.30661 -19.31413 -18.55828 -17.23781 -16.79712 -16.44215 -15.51677 -15.44006 -15.05750 -14.50854 -14.14883 -14.09687 -13.77197 -13.61871 -13.37104 -13.19791 -12.87422 -12.61674 -12.35940 -12.26584 -12.12550 -11.88221 -11.67299 -11.54861 -11.35904 -11.00669 -10.88220 -10.80311 -10.56025 -10.31883 -10.31283 -10.19188 -9.91871 -9.69527 -9.56394 -9.10660 -8.63828 -8.49865 -8.35549 -5.99263 -3.96720 2.72312 3.05562 3.37471 3.44078 3.49186 4.47956 4.51374 4.51967 4.63874 4.80659 4.88287 4.94116 5.02112 5.05672 5.19508 5.28196 5.35037 5.36386 5.47183 5.49652 5.56647 5.60584 5.68241 5.70238 5.76913 5.79633 5.85816 5.94851 5.97211 6.08244 6.16007 6.23361 6.27856 6.33998 6.46288 6.50412 6.65406 6.90580 7.27307 7.38698 7.44873 7.57971 7.68828 7.86807 8.29709 8.58359 9.05460 9.63958 11.14246 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.005027 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.396700 B = 5568.456409 C = 6454.947664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 H 0.073 0.927 4 C -0.149 4.149 5 C 0.112 3.888 6 N -0.605 5.605 7 C 0.485 3.515 8 O -0.553 6.553 9 C 0.073 3.927 10 H 0.097 0.903 11 N -0.812 5.812 12 C -0.090 4.090 13 C -0.003 4.003 14 C -0.520 4.520 15 H 0.068 0.932 16 C 0.066 3.934 17 N -0.906 5.906 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.264 1.264 22 C 0.120 3.880 23 C -0.107 4.107 24 H 0.071 0.929 25 C -0.140 4.140 26 C -0.112 4.112 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.334 0.666 35 H 0.349 0.651 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.012 0.988 39 H 0.029 0.971 40 H 0.262 0.738 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 19.651 7.128 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.187 4.187 5 C -0.009 4.009 6 N -0.338 5.338 7 C 0.272 3.728 8 O -0.431 6.431 9 C -0.042 4.042 10 H 0.115 0.885 11 N -0.340 5.340 12 C -0.128 4.128 13 C -0.041 4.041 14 C -0.558 4.558 15 H 0.086 0.914 16 C -0.134 4.134 17 N -0.546 5.546 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.189 1.189 22 C -0.005 4.005 23 C -0.127 4.127 24 H 0.089 0.911 25 C -0.198 4.198 26 C -0.149 4.149 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.146 0.854 35 H 0.163 0.837 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.030 0.970 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.035 19.019 6.860 20.219 hybrid contribution 0.534 0.530 0.094 0.759 sum 0.499 19.550 6.954 20.756 Atomic orbital electron populations 1.21856 0.94793 1.02095 1.01319 1.20553 0.95457 0.99367 0.95131 0.90890 1.21068 0.96726 1.02037 0.98870 1.21221 0.88558 1.02060 0.89021 1.48228 1.31790 1.35055 1.18705 1.22553 0.79539 0.80529 0.90139 1.90640 1.42931 1.70412 1.39073 1.21880 0.93006 0.94987 0.94338 0.88520 1.59058 1.01659 1.28118 1.45166 1.21551 0.94940 0.94550 1.01760 1.19474 0.97795 0.94853 0.91956 1.21162 1.19459 1.10834 1.04312 0.91353 1.25001 0.95061 0.94940 0.98418 1.69919 1.34815 1.16541 1.33303 0.86751 0.80566 0.78974 0.82809 1.20296 1.21734 1.18906 1.20847 1.00206 0.92221 0.87212 1.22082 0.96353 0.97922 0.96342 0.91066 1.21768 1.01091 0.97707 0.99254 1.21713 0.96147 0.99649 0.97405 0.92364 0.92911 0.92695 0.90807 0.90187 0.90883 0.88481 0.85408 0.83689 0.92394 0.91828 0.97011 0.95298 0.92858 0.91393 0.91635 0.92430 0.92824 0.92634 0.92303 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.84 37.16 0.33 -0.96 16 2 C -0.09 -0.85 2.42 -92.30 -0.22 -1.07 16 3 H 0.07 0.66 5.73 -51.93 -0.30 0.36 16 4 C -0.15 -1.65 4.65 -30.19 -0.14 -1.79 16 5 C 0.11 1.21 5.34 -5.21 -0.03 1.18 16 6 N -0.60 -7.71 2.58 -175.86 -0.45 -8.16 16 7 C 0.48 7.60 6.92 -10.99 -0.08 7.53 16 8 O -0.55 -10.18 15.85 5.55 0.09 -10.09 16 9 C 0.07 1.18 2.31 -68.86 -0.16 1.02 16 10 H 0.10 1.43 6.49 -51.93 -0.34 1.09 16 11 N -0.81 -13.02 8.44 -5.65 -0.05 -13.07 16 12 C -0.09 -1.74 4.59 -26.73 -0.12 -1.86 16 13 C 0.00 -0.08 3.93 -27.89 -0.11 -0.19 16 14 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 15 H 0.07 2.08 7.99 -52.48 -0.42 1.66 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.91 -28.02 13.96 55.43 0.77 -27.25 16 18 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 22 C 0.12 1.38 4.29 -4.93 -0.02 1.36 16 23 C -0.11 -1.18 3.20 -88.91 -0.28 -1.46 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 25 C -0.14 -1.20 8.93 37.16 0.33 -0.87 16 26 C -0.11 -1.24 4.68 -27.19 -0.13 -1.37 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.45 8.11 -51.93 -0.42 0.03 16 30 H 0.07 0.75 7.80 -51.92 -0.40 0.35 16 31 H 0.08 1.10 4.86 -51.93 -0.25 0.85 16 32 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 33 H 0.10 1.10 5.43 -51.93 -0.28 0.82 16 34 H 0.33 4.64 9.06 -39.29 -0.36 4.28 16 35 H 0.35 5.77 8.58 -39.29 -0.34 5.43 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.17 5.20 -51.93 -0.27 0.90 16 38 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 39 H 0.03 0.70 7.18 -51.93 -0.37 0.33 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.07 0.88 7.42 -51.93 -0.39 0.50 16 42 H 0.07 0.62 6.68 -51.93 -0.35 0.28 16 43 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.05 0.43 7.57 -51.93 -0.39 0.03 16 46 H 0.06 0.61 7.55 -51.92 -0.39 0.22 16 47 H 0.07 0.90 6.83 -51.93 -0.35 0.54 16 LS Contribution 349.25 15.07 5.26 5.26 Total: -1.00 -32.09 349.25 -8.23 -40.32 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -8.12 Total: 7.38 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -1.06 Total: -11.66 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.27 Total: -48.48 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.09 -8.23 -40.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332043850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.205 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds