Wall clock time and date at job start Tue Mar 31 2020 06:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.32644 * 2 1 4 4 C 1.52530 * 110.24916 * 237.98738 * 2 1 3 5 5 C 1.46761 * 114.24356 * 151.51518 * 4 2 1 6 6 N 1.50173 * 107.26243 * 58.55394 * 5 4 2 7 7 C 1.34777 * 120.53639 * 109.63632 * 6 5 4 8 8 O 1.21274 * 120.00135 * 180.02562 * 7 6 5 9 9 C 1.50706 * 119.99766 * 359.72524 * 7 6 5 10 10 H 1.08997 * 109.47222 * 319.99496 * 9 7 6 11 11 N 1.46903 * 109.46927 * 199.99569 * 9 7 6 12 12 C 1.52995 * 109.46924 * 79.99963 * 9 7 6 13 13 C 1.53004 * 109.46881 * 184.99730 * 12 9 7 14 14 C 1.50705 * 109.46892 * 179.97438 * 13 12 9 15 15 H 1.07998 * 120.00233 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99775 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00082 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00009 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47066 * 89.99777 * 18 16 14 20 20 H 1.48502 * 109.47027 * 209.99863 * 18 16 14 21 21 H 1.48507 * 109.46946 * 329.99736 * 18 16 14 22 22 C 1.43433 * 118.92564 * 289.36921 * 6 5 4 23 23 C 1.54896 * 116.08413 * 91.81468 * 22 6 5 24 24 H 1.09001 * 109.36145 * 78.84283 * 23 22 6 25 25 C 1.52994 * 109.36121 * 198.43451 * 23 22 6 26 26 C 1.50127 * 110.25144 * 122.01006 * 2 1 3 27 27 H 1.08997 * 109.46617 * 297.98969 * 1 2 3 28 28 H 1.08994 * 109.47091 * 57.99273 * 1 2 3 29 29 H 1.09002 * 109.46587 * 177.99008 * 1 2 3 30 30 H 1.08998 * 108.52658 * 272.86135 * 4 2 1 31 31 H 1.09003 * 108.52150 * 30.53947 * 4 2 1 32 32 H 1.09002 * 109.95661 * 299.14312 * 5 4 2 33 33 H 1.09000 * 109.99972 * 177.98872 * 5 4 2 34 34 H 1.00891 * 110.99992 * 176.04647 * 11 9 7 35 35 H 1.00903 * 110.99969 * 300.00649 * 11 9 7 36 36 H 1.08999 * 109.47349 * 304.99287 * 12 9 7 37 37 H 1.09001 * 109.47401 * 65.00034 * 12 9 7 38 38 H 1.09000 * 109.47300 * 299.99364 * 13 12 9 39 39 H 1.08996 * 109.46955 * 60.00404 * 13 12 9 40 40 H 0.96996 * 119.99702 * 180.02562 * 17 16 14 41 41 H 1.09001 * 108.15861 * 213.53286 * 22 6 5 42 42 H 1.09000 * 108.15833 * 330.09973 * 22 6 5 43 43 H 1.09005 * 109.47155 * 60.00469 * 25 23 22 44 44 H 1.09004 * 109.47438 * 179.97438 * 25 23 22 45 45 H 1.08992 * 109.47131 * 299.99971 * 25 23 22 46 46 H 1.09002 * 109.20977 * 96.31236 * 26 2 1 47 47 H 1.09001 * 109.20808 * 337.00119 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0580 -0.7586 -1.2134 5 6 3.3700 -0.3014 -1.6860 6 7 4.3331 -0.4542 -0.5439 7 6 5.2934 -1.3992 -0.5798 8 8 6.0658 -1.5144 0.3481 9 6 5.4033 -2.3170 -1.7701 10 1 4.4052 -2.6056 -2.0996 11 7 6.1611 -3.5180 -1.3940 12 6 6.1265 -1.5930 -2.9073 13 6 6.1283 -2.4778 -4.1555 14 6 6.8402 -1.7644 -5.2760 15 1 7.2507 -0.7787 -5.1139 16 6 6.9684 -2.3705 -6.5077 17 7 7.5901 -1.7482 -7.4854 18 14 6.2591 -4.0758 -6.7879 19 1 4.8594 -3.9567 -7.2691 20 1 7.0731 -4.7896 -7.8044 21 1 6.2811 -4.8367 -5.5127 22 6 4.2180 0.4254 0.5832 23 6 3.3295 -0.0745 1.7493 24 1 3.8877 -0.7968 2.3449 25 6 2.9372 1.1116 2.6326 26 6 2.0497 -0.7466 1.1943 27 1 -0.3632 0.4823 0.9075 28 1 -0.3633 0.5447 -0.8714 29 1 -0.3632 -1.0271 -0.0360 30 1 2.1294 -1.8156 -0.9569 31 1 1.3426 -0.6488 -2.0285 32 1 3.3137 0.7453 -1.9850 33 1 3.6958 -0.9108 -2.5289 34 1 6.1937 -4.1783 -2.1560 35 1 7.0907 -3.2767 -1.0844 36 1 5.6132 -0.6567 -3.1265 37 1 7.1538 -1.3831 -2.6093 38 1 6.6417 -3.4141 -3.9365 39 1 5.1012 -2.6876 -4.4536 40 1 7.6799 -2.1745 -8.3520 41 1 5.2188 0.6101 0.9736 42 1 3.8153 1.3757 0.2326 43 1 2.3837 1.8393 2.0390 44 1 2.3114 0.7619 3.4537 45 1 3.8364 1.5787 3.0340 46 1 2.2800 -1.7717 0.9041 47 1 1.2849 -0.7577 1.9709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332043851.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:49 Heat of formation + Delta-G solvation = -58.132530 kcal Electronic energy + Delta-G solvation = -23743.715331 eV Core-core repulsion = 20539.360400 eV Total energy + Delta-G solvation = -3204.354931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.56405 -38.30741 -35.73327 -34.50931 -34.03121 -32.79002 -30.32149 -29.48904 -27.77351 -26.92664 -25.69038 -23.62061 -23.10344 -21.67350 -20.26700 -19.48467 -18.60299 -17.39156 -16.74480 -16.35306 -15.63202 -15.18813 -14.67208 -14.37974 -14.22590 -14.16054 -13.88208 -13.79742 -13.30912 -13.21417 -12.94061 -12.80875 -12.69148 -12.31177 -12.16730 -11.92664 -11.81048 -11.58074 -11.37121 -11.29464 -10.99098 -10.91094 -10.63863 -10.44078 -10.34231 -10.30439 -10.07786 -9.89322 -9.32728 -9.30797 -8.63129 -8.57980 -8.28291 -6.12640 -4.12203 2.88609 3.06537 3.23776 3.32585 3.33778 4.36650 4.44236 4.47666 4.58605 4.78176 4.88843 4.96377 5.02771 5.07303 5.18306 5.20408 5.34016 5.36944 5.44420 5.47272 5.50918 5.54954 5.58796 5.60653 5.72282 5.77047 5.81600 5.90436 5.91689 5.99383 6.09496 6.14225 6.14944 6.24186 6.29408 6.32960 6.64558 6.69934 7.08833 7.20287 7.33060 7.55397 7.66112 7.79439 8.43339 8.45767 8.91490 9.48656 11.00582 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.004187 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.455413 B = 6686.492995 C = 7162.987719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.077 0.923 4 C -0.140 4.140 5 C 0.107 3.893 6 N -0.609 5.609 7 C 0.528 3.472 8 O -0.537 6.537 9 C 0.071 3.929 10 H 0.095 0.905 11 N -0.831 5.831 12 C -0.132 4.132 13 C -0.010 4.010 14 C -0.523 4.523 15 H 0.071 0.929 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.265 1.265 22 C 0.122 3.878 23 C -0.107 4.107 24 H 0.072 0.928 25 C -0.141 4.141 26 C -0.109 4.109 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.350 0.650 35 H 0.348 0.652 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.013 0.987 40 H 0.264 0.736 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 3.976 15.938 21.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.095 0.905 4 C -0.178 4.178 5 C -0.014 4.014 6 N -0.343 5.343 7 C 0.316 3.684 8 O -0.412 6.412 9 C -0.044 4.044 10 H 0.113 0.887 11 N -0.363 5.363 12 C -0.171 4.171 13 C -0.048 4.048 14 C -0.561 4.561 15 H 0.089 0.911 16 C -0.134 4.134 17 N -0.539 5.539 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.190 1.190 22 C -0.003 4.003 23 C -0.127 4.127 24 H 0.090 0.910 25 C -0.199 4.199 26 C -0.146 4.146 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.400 3.772 16.800 22.446 hybrid contribution 0.253 -0.548 -1.182 1.327 sum -14.147 3.224 15.618 21.318 Atomic orbital electron populations 1.21853 0.94897 1.01722 1.01497 1.20586 0.95293 0.99841 0.95089 0.90501 1.21075 0.97021 1.01029 0.98710 1.21390 0.88136 1.02841 0.89050 1.48021 1.32302 1.35217 1.18713 1.20749 0.79407 0.80137 0.88069 1.90626 1.42317 1.69925 1.38362 1.21534 0.99888 0.90943 0.92021 0.88683 1.58741 1.22368 1.13049 1.42119 1.22247 1.00068 0.99869 0.94948 1.19574 0.96695 0.95431 0.93054 1.21064 1.36296 1.04333 0.94442 0.91066 1.25041 0.94709 0.97676 0.95971 1.69912 1.42652 1.38286 1.03063 0.86774 0.79249 0.84892 0.78321 1.20246 1.21328 1.18976 1.20929 1.00368 0.92029 0.86985 1.22174 0.96144 0.97921 0.96443 0.90991 1.21776 1.01201 0.97751 0.99188 1.21688 0.96295 0.99367 0.97291 0.92785 0.92667 0.92740 0.91390 0.91093 0.90443 0.88219 0.83583 0.83894 0.91776 0.92039 0.96597 0.96869 0.92628 0.91101 0.91521 0.92623 0.92549 0.92650 0.91970 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.84 37.16 0.33 -0.72 16 2 C -0.09 -0.77 2.43 -92.29 -0.22 -0.99 16 3 H 0.08 0.66 5.74 -51.93 -0.30 0.36 16 4 C -0.14 -1.33 4.76 -29.95 -0.14 -1.47 16 5 C 0.11 1.18 5.38 -4.97 -0.03 1.15 16 6 N -0.61 -8.07 2.56 -175.26 -0.45 -8.52 16 7 C 0.53 8.75 6.93 -10.98 -0.08 8.67 16 8 O -0.54 -10.52 15.86 5.56 0.09 -10.43 16 9 C 0.07 1.17 2.35 -68.86 -0.16 1.00 16 10 H 0.10 1.44 6.88 -51.93 -0.36 1.08 16 11 N -0.83 -13.77 8.93 -5.65 -0.05 -13.82 16 12 C -0.13 -2.48 4.44 -26.73 -0.12 -2.60 16 13 C -0.01 -0.22 3.81 -27.88 -0.11 -0.33 16 14 C -0.52 -14.39 9.66 -34.44 -0.33 -14.72 16 15 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 18 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 22 C 0.12 1.44 4.32 -4.66 -0.02 1.42 16 23 C -0.11 -1.11 3.21 -88.65 -0.28 -1.40 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 C -0.14 -1.16 8.94 37.15 0.33 -0.83 16 26 C -0.11 -1.05 4.68 -27.19 -0.13 -1.18 16 27 H 0.05 0.37 8.12 -51.93 -0.42 -0.05 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.72 6.93 -51.93 -0.36 0.36 16 31 H 0.07 0.59 7.82 -51.93 -0.41 0.19 16 32 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 33 H 0.10 1.20 4.90 -51.93 -0.25 0.95 16 34 H 0.35 5.59 7.55 -39.30 -0.30 5.30 16 35 H 0.35 5.90 8.58 -39.29 -0.34 5.56 16 36 H 0.06 1.17 6.88 -51.93 -0.36 0.81 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.35 5.93 -51.93 -0.31 0.04 16 39 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.07 0.97 7.42 -51.93 -0.39 0.58 16 42 H 0.07 0.67 6.67 -51.93 -0.35 0.32 16 43 H 0.05 0.41 7.57 -51.93 -0.39 0.02 16 44 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.71 6.83 -51.93 -0.35 0.35 16 47 H 0.06 0.51 7.52 -51.93 -0.39 0.11 16 LS Contribution 350.91 15.07 5.29 5.29 Total: -1.00 -31.33 350.91 -8.28 -39.61 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -8.20 Total: 8.20 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -1.06 Total: -10.17 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.27 Total: -48.79 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.33 -8.28 -39.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332043851.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.519 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds