Wall clock time and date at job start Tue Mar 31 2020 06:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.41742 * 2 1 4 4 C 1.53654 * 109.42038 * 240.12506 * 2 1 3 5 5 C 1.46635 * 112.44354 * 160.48078 * 4 2 1 6 6 H 1.08999 * 108.88412 * 302.02057 * 5 4 2 7 7 C 1.52990 * 108.88673 * 183.45458 * 5 4 2 8 8 C 1.53649 * 112.45468 * 62.68435 * 5 4 2 9 9 C 1.50453 * 109.76866 * 280.53961 * 8 5 4 10 10 N 1.48263 * 111.52131 * 89.51311 * 9 8 5 11 11 C 1.34779 * 120.02482 * 140.46906 * 10 9 8 12 12 O 1.21277 * 120.00203 * 179.97438 * 11 10 9 13 13 C 1.50700 * 119.99874 * 0.02562 * 11 10 9 14 14 H 1.08997 * 109.47172 * 319.99864 * 13 11 10 15 15 N 1.46900 * 109.47321 * 199.99934 * 13 11 10 16 16 C 1.53003 * 109.47185 * 79.99615 * 13 11 10 17 17 C 1.52999 * 109.47028 * 184.99951 * 16 13 11 18 18 C 1.50704 * 109.46973 * 180.02562 * 17 16 13 19 19 H 1.08005 * 120.00028 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00005 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00046 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 359.97438 * 20 18 17 23 23 H 1.48492 * 109.47396 * 90.00264 * 22 20 18 24 24 H 1.48506 * 109.47079 * 210.00491 * 22 20 18 25 25 H 1.48502 * 109.47163 * 329.99958 * 22 20 18 26 26 C 1.48349 * 119.92912 * 320.49598 * 10 9 8 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00231 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00212 * 1 2 3 30 30 H 1.08993 * 108.88750 * 281.24276 * 4 2 1 31 31 H 1.08990 * 108.88861 * 39.71785 * 4 2 1 32 32 H 1.09006 * 109.47164 * 60.00227 * 7 5 4 33 33 H 1.09002 * 109.47361 * 179.97438 * 7 5 4 34 34 H 1.08996 * 109.47294 * 300.00343 * 7 5 4 35 35 H 1.08998 * 109.42411 * 40.63282 * 8 5 4 36 36 H 1.09004 * 109.42170 * 160.50731 * 8 5 4 37 37 H 1.09002 * 109.06965 * 210.04321 * 9 8 5 38 38 H 1.09004 * 109.06879 * 329.05646 * 9 8 5 39 39 H 1.00897 * 111.00360 * 176.04884 * 15 13 11 40 40 H 1.00901 * 110.99664 * 299.99854 * 15 13 11 41 41 H 1.09001 * 109.47466 * 305.00226 * 16 13 11 42 42 H 1.09004 * 109.46945 * 65.00378 * 16 13 11 43 43 H 1.08999 * 109.47601 * 300.00049 * 17 16 13 44 44 H 1.09004 * 109.46909 * 60.00405 * 17 16 13 45 45 H 0.97001 * 119.99702 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.04750 * 199.83858 * 26 10 9 47 47 H 1.08998 * 109.13286 * 80.86944 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8923 1.0280 0.0000 4 6 2.0409 -0.7218 -1.2566 5 6 3.4317 -0.3806 -1.5716 6 1 3.5083 0.6983 -1.7069 7 6 3.8277 -1.0722 -2.8776 8 6 4.4068 -0.8115 -0.4651 9 6 4.3702 0.1848 0.6617 10 7 3.3423 -0.1711 1.6691 11 6 3.6000 -0.0085 2.9820 12 8 2.7587 -0.2993 3.8057 13 6 4.9332 0.5357 3.4264 14 1 5.7241 0.1070 2.8109 15 7 5.1620 0.1819 4.8337 16 6 4.9384 2.0582 3.2759 17 6 6.3307 2.5988 3.6080 18 6 6.3357 4.0986 3.4603 19 1 5.4359 4.6145 3.1592 20 6 7.4891 4.8119 3.7084 21 7 7.4933 6.1208 3.5801 22 14 9.0456 3.9195 4.2284 23 1 9.8300 3.5490 3.0232 24 1 9.8601 4.8088 5.0950 25 1 8.6841 2.6911 4.9807 26 6 2.0303 -0.7067 1.2305 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.9686 -1.7979 -1.0992 31 1 1.4101 -0.4476 -2.1020 32 1 3.1739 -0.7329 -3.6811 33 1 4.8608 -0.8244 -3.1213 34 1 3.7302 -2.1515 -2.7612 35 1 4.1186 -1.7935 -0.0902 36 1 5.4171 -0.8609 -0.8714 37 1 5.3472 0.2127 1.1442 38 1 4.1446 1.1716 0.2574 39 1 6.0771 0.4796 5.1373 40 1 4.4416 0.5680 5.4253 41 1 4.6810 2.3229 2.2503 42 1 4.2077 2.4933 3.9578 43 1 6.5882 2.3342 4.6335 44 1 7.0615 2.1638 2.9261 45 1 8.3048 6.6226 3.7550 46 1 1.3062 -0.5769 2.0348 47 1 2.1329 -1.7699 1.0136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332043852.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:52 Heat of formation + Delta-G solvation = -62.419057 kcal Electronic energy + Delta-G solvation = -23553.912762 eV Core-core repulsion = 20349.371954 eV Total energy + Delta-G solvation = -3204.540809 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.37543 -38.50581 -35.68318 -34.57173 -34.21974 -32.78488 -30.30819 -29.39952 -27.77530 -26.94862 -25.80346 -23.63959 -23.14490 -20.65206 -20.40755 -20.09682 -18.77417 -17.48221 -16.72686 -16.46584 -15.38908 -15.17451 -14.98614 -14.32276 -14.25340 -14.13785 -14.03673 -13.48236 -13.31799 -13.12175 -12.86185 -12.76682 -12.67946 -12.42694 -12.19257 -12.10880 -11.74628 -11.67047 -11.41237 -11.32843 -10.98809 -10.93891 -10.72080 -10.59349 -10.44828 -10.29773 -10.04901 -9.88684 -9.31558 -9.28981 -8.62330 -8.55376 -8.27568 -6.11858 -4.11311 2.92733 2.98802 3.24402 3.33102 3.34431 4.37408 4.37701 4.39194 4.58442 4.77406 4.79407 4.91583 5.02275 5.08422 5.19877 5.21273 5.32887 5.39549 5.41068 5.41892 5.49006 5.55882 5.61822 5.64921 5.69335 5.70559 5.80408 5.86304 5.91562 5.95114 6.01220 6.12839 6.15856 6.17080 6.24630 6.33910 6.59309 6.66195 7.09826 7.21717 7.33239 7.57855 7.67061 7.80411 8.43112 8.45181 8.92213 9.49506 11.01400 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017919 B = 0.004356 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.183876 B = 6426.852972 C = 7019.104254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 H 0.080 0.920 4 C -0.108 4.108 5 C -0.094 4.094 6 H 0.072 0.928 7 C -0.147 4.147 8 C -0.127 4.127 9 C 0.105 3.895 10 N -0.617 5.617 11 C 0.528 3.472 12 O -0.541 6.541 13 C 0.071 3.929 14 H 0.097 0.903 15 N -0.831 5.831 16 C -0.129 4.129 17 C -0.010 4.010 18 C -0.523 4.523 19 H 0.071 0.929 20 C 0.068 3.932 21 N -0.901 5.901 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.265 1.265 26 C 0.122 3.878 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.350 0.650 40 H 0.348 0.652 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.013 0.987 45 H 0.264 0.736 46 H 0.084 0.916 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.712 -15.440 -11.519 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 H 0.098 0.902 4 C -0.145 4.145 5 C -0.112 4.112 6 H 0.090 0.910 7 C -0.205 4.205 8 C -0.165 4.165 9 C -0.017 4.017 10 N -0.353 5.353 11 C 0.316 3.684 12 O -0.417 6.417 13 C -0.044 4.044 14 H 0.114 0.886 15 N -0.363 5.363 16 C -0.169 4.169 17 C -0.047 4.047 18 C -0.561 4.561 19 H 0.089 0.911 20 C -0.134 4.134 21 N -0.540 5.540 22 Si 0.708 3.292 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.190 1.190 26 C 0.000 4.000 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.031 0.969 45 H 0.074 0.926 46 H 0.103 0.897 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.130 -16.203 -11.293 21.759 hybrid contribution 1.050 0.832 0.247 1.362 sum -8.080 -15.371 -11.047 20.581 Atomic orbital electron populations 1.21812 0.94235 1.01905 1.02086 1.21084 0.96107 1.00865 0.94448 0.90198 1.20695 0.95985 1.00427 0.97386 1.20196 0.94998 1.01003 0.95048 0.90996 1.21908 1.01425 1.00466 0.96682 1.21599 1.00135 0.99650 0.95160 1.21576 0.91901 0.98460 0.89811 1.48900 1.15153 1.65494 1.05755 1.20734 0.89581 0.76713 0.81385 1.90621 1.48370 1.50830 1.51876 1.21574 0.94221 0.96290 0.92342 0.88561 1.58752 1.08437 1.67385 1.01727 1.22199 1.01073 0.91350 1.02289 1.19571 0.91620 0.97420 0.96128 1.21062 0.98494 0.89698 1.46811 0.91095 1.25035 0.98868 0.94725 0.94759 1.69916 1.28552 1.06014 1.49477 0.86773 0.83389 0.80029 0.79037 1.20253 1.21333 1.18974 1.21296 0.84934 0.96871 0.96917 0.92561 0.92364 0.92324 0.92100 0.91842 0.92819 0.92494 0.92835 0.91052 0.90260 0.89554 0.91226 0.83576 0.83894 0.91877 0.92108 0.96607 0.96866 0.92643 0.89723 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.88 37.16 0.33 -0.88 16 2 C -0.11 -1.02 2.35 -91.55 -0.21 -1.24 16 3 H 0.08 0.88 7.43 -51.93 -0.39 0.50 16 4 C -0.11 -0.87 3.92 -29.43 -0.12 -0.99 16 5 C -0.09 -0.77 2.26 -93.33 -0.21 -0.98 16 6 H 0.07 0.64 7.57 -51.93 -0.39 0.25 16 7 C -0.15 -1.05 8.98 37.15 0.33 -0.71 16 8 C -0.13 -1.16 4.89 -27.67 -0.14 -1.29 16 9 C 0.10 1.21 4.55 -4.34 -0.02 1.19 16 10 N -0.62 -8.40 3.13 -173.72 -0.54 -8.95 16 11 C 0.53 8.92 6.94 -10.98 -0.08 8.84 16 12 O -0.54 -10.73 15.71 5.56 0.09 -10.64 16 13 C 0.07 1.17 2.39 -68.86 -0.16 1.01 16 14 H 0.10 1.48 6.32 -51.93 -0.33 1.15 16 15 N -0.83 -13.91 8.94 -5.65 -0.05 -13.96 16 16 C -0.13 -2.47 4.71 -26.73 -0.13 -2.60 16 17 C -0.01 -0.22 3.81 -27.88 -0.11 -0.33 16 18 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 19 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 20 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 21 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 22 Si 0.88 21.03 27.47 -169.99 -4.67 16.37 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 26 C 0.12 1.45 5.05 -4.29 -0.02 1.43 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.06 0.48 7.57 -51.93 -0.39 0.09 16 31 H 0.06 0.47 7.91 -51.93 -0.41 0.06 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.68 7.43 -51.93 -0.39 0.29 16 36 H 0.08 0.65 7.91 -51.93 -0.41 0.24 16 37 H 0.09 1.02 5.61 -51.93 -0.29 0.73 16 38 H 0.07 0.82 7.07 -51.93 -0.37 0.45 16 39 H 0.35 5.63 7.55 -39.29 -0.30 5.34 16 40 H 0.35 5.95 8.58 -39.29 -0.34 5.61 16 41 H 0.06 1.18 7.24 -51.93 -0.38 0.80 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.02 0.35 5.93 -51.93 -0.31 0.04 16 44 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.08 1.16 6.75 -51.93 -0.35 0.81 16 47 H 0.06 0.65 7.14 -51.93 -0.37 0.28 16 LS Contribution 352.52 15.07 5.31 5.31 Total: -1.00 -31.54 352.52 -8.38 -39.92 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -8.33 Total: 8.03 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -0.96 Total: -9.52 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.18 Total: -49.46 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.54 -8.38 -39.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332043852.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.497 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds