Wall clock time and date at job start Tue Mar 31 2020 06:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.35604 * 2 1 4 4 C 1.54843 * 109.35695 * 240.28067 * 2 1 3 5 5 C 1.50134 * 110.81713 * 201.06039 * 4 2 1 6 6 H 1.09000 * 110.36607 * 338.64822 * 5 4 2 7 7 C 1.52995 * 110.24998 * 216.65554 * 5 4 2 8 8 C 1.52530 * 105.41150 * 97.67832 * 5 4 2 9 9 C 1.46232 * 114.27903 * 270.59391 * 8 5 4 10 10 N 1.50165 * 107.53217 * 58.41335 * 9 8 5 11 11 C 1.34774 * 120.53912 * 109.56860 * 10 9 8 12 12 O 1.21284 * 120.00306 * 180.02562 * 11 10 9 13 13 C 1.50708 * 119.99974 * 359.97438 * 11 10 9 14 14 H 1.09001 * 109.46724 * 40.00439 * 13 11 10 15 15 N 1.46898 * 109.47125 * 160.00093 * 13 11 10 16 16 C 1.52996 * 109.47139 * 280.00620 * 13 11 10 17 17 C 1.52997 * 109.46947 * 174.99712 * 16 13 11 18 18 C 1.50706 * 109.47238 * 179.97438 * 17 16 13 19 19 H 1.07999 * 119.99515 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00176 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99883 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00043 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47288 * 59.99994 * 22 20 18 24 24 H 1.48503 * 109.47086 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46819 * 299.99648 * 22 20 18 26 26 C 1.43430 * 118.92508 * 289.83915 * 10 9 8 27 27 H 1.09001 * 109.47121 * 179.72368 * 1 2 3 28 28 H 1.08997 * 109.47193 * 299.71783 * 1 2 3 29 29 H 1.08997 * 109.47747 * 59.72571 * 1 2 3 30 30 H 1.09002 * 109.21371 * 80.71438 * 4 2 1 31 31 H 1.08997 * 109.21020 * 321.40412 * 4 2 1 32 32 H 1.09006 * 109.46987 * 304.01777 * 7 5 4 33 33 H 1.09003 * 109.47266 * 64.01978 * 7 5 4 34 34 H 1.09005 * 109.47297 * 184.02031 * 7 5 4 35 35 H 1.09001 * 108.51399 * 149.35444 * 8 5 4 36 36 H 1.09000 * 108.52355 * 31.84223 * 8 5 4 37 37 H 1.08997 * 109.84663 * 298.90480 * 9 8 5 38 38 H 1.09006 * 109.90064 * 177.95356 * 9 8 5 39 39 H 1.00906 * 110.99610 * 60.00093 * 15 13 11 40 40 H 1.00896 * 110.99777 * 183.95669 * 15 13 11 41 41 H 1.09001 * 109.47372 * 55.00021 * 16 13 11 42 42 H 1.09004 * 109.47108 * 294.99766 * 16 13 11 43 43 H 1.09001 * 109.46832 * 59.99979 * 17 16 13 44 44 H 1.09000 * 109.47611 * 300.00276 * 17 16 13 45 45 H 0.97004 * 119.99507 * 180.02562 * 21 20 18 46 46 H 1.09007 * 108.15940 * 213.03525 * 26 10 9 47 47 H 1.08998 * 108.16350 * 329.59939 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8912 1.0284 0.0000 4 6 2.0432 -0.7242 -1.2687 5 6 3.4556 -1.1966 -1.0789 6 1 3.9415 -0.6300 -0.2846 7 6 4.2407 -1.0565 -2.3846 8 6 3.3423 -2.6660 -0.6859 9 6 3.2275 -2.8963 0.7536 10 7 2.0119 -2.1573 1.2344 11 6 0.9115 -2.8302 1.6252 12 8 -0.0651 -2.2235 2.0115 13 6 0.8940 -4.3365 1.5812 14 1 1.8590 -4.7208 1.9119 15 7 -0.1634 -4.8401 2.4679 16 6 0.6235 -4.8018 0.1491 17 6 0.7291 -6.3265 0.0797 18 6 0.4620 -6.7850 -1.3308 19 1 0.2395 -6.0611 -2.1008 20 6 0.5016 -8.1284 -1.6383 21 7 0.7720 -9.0099 -0.7004 22 14 0.1711 -8.6965 -3.3868 23 1 1.1709 -8.0896 -4.3018 24 1 0.2736 -10.1765 -3.4541 25 1 -1.1933 -8.2753 -3.7946 26 6 2.0388 -0.7236 1.2655 27 1 -0.3633 -1.0277 -0.0050 28 1 -0.3633 0.5094 0.8925 29 1 -0.3634 0.5181 -0.8875 30 1 2.0054 -0.0371 -2.1141 31 1 1.4031 -1.5818 -1.4758 32 1 3.7263 -1.5989 -3.1779 33 1 4.3140 -0.0027 -2.6533 34 1 5.2414 -1.4683 -2.2528 35 1 4.2248 -3.1911 -1.0514 36 1 2.4648 -3.0887 -1.1753 37 1 4.1151 -2.5181 1.2607 38 1 3.1147 -3.9624 0.9510 39 1 -1.0685 -4.4975 2.1819 40 1 -0.1538 -5.8483 2.5058 41 1 1.3570 -4.3559 -0.5226 42 1 -0.3782 -4.4930 -0.1502 43 1 -0.0044 -6.7725 0.7514 44 1 1.7307 -6.6354 0.3790 45 1 0.8002 -9.9551 -0.9168 46 1 1.4327 -0.3906 2.1081 47 1 3.0658 -0.4069 1.4468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332043853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:54 Heat of formation + Delta-G solvation = -59.644734 kcal Electronic energy + Delta-G solvation = -24215.327873 eV Core-core repulsion = 21010.907368 eV Total energy + Delta-G solvation = -3204.420505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.54206 -38.05611 -35.64271 -34.32132 -33.94367 -32.81615 -29.89913 -29.39613 -27.56562 -26.66028 -25.56458 -23.54495 -23.34011 -21.02093 -20.58686 -19.57246 -18.26441 -17.34940 -16.45322 -16.10690 -15.63641 -14.77749 -14.70630 -14.46412 -14.44230 -14.03178 -13.85851 -13.31359 -13.12761 -13.05170 -12.82837 -12.53077 -12.43842 -12.21116 -12.04122 -11.73844 -11.58638 -11.30942 -11.22064 -10.97802 -10.88795 -10.72961 -10.64904 -10.47044 -10.36245 -10.27370 -9.92290 -9.79870 -9.27461 -9.12939 -8.46032 -8.44070 -8.14514 -6.09101 -4.12203 2.98607 3.16071 3.27383 3.32504 3.34806 4.38331 4.55110 4.59965 4.70900 4.93245 5.01487 5.11314 5.12517 5.21673 5.25989 5.27319 5.45853 5.48764 5.59451 5.60435 5.68585 5.76674 5.77579 5.82365 5.85622 5.89652 5.95769 6.04844 6.13101 6.15715 6.20852 6.29779 6.33977 6.47125 6.50709 6.56057 6.80866 6.90313 7.44250 7.51545 7.60838 7.68097 7.87935 7.93518 8.30724 8.55683 8.93457 9.52701 11.01734 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015996 B = 0.005277 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.028470 B = 5304.769709 C = 6210.610711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 H 0.074 0.926 4 C -0.111 4.111 5 C -0.088 4.088 6 H 0.074 0.926 7 C -0.143 4.143 8 C -0.146 4.146 9 C 0.112 3.888 10 N -0.608 5.608 11 C 0.527 3.473 12 O -0.534 6.534 13 C 0.073 3.927 14 H 0.095 0.905 15 N -0.831 5.831 16 C -0.140 4.140 17 C 0.026 3.974 18 C -0.523 4.523 19 H 0.053 0.947 20 C 0.060 3.940 21 N -0.893 5.893 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 C 0.121 3.879 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.345 0.655 40 H 0.353 0.647 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.017 0.983 44 H 0.017 0.983 45 H 0.262 0.738 46 H 0.071 0.929 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.149 16.071 1.034 17.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.092 0.908 4 C -0.148 4.148 5 C -0.106 4.106 6 H 0.092 0.908 7 C -0.200 4.200 8 C -0.184 4.184 9 C -0.009 4.009 10 N -0.342 5.342 11 C 0.315 3.685 12 O -0.410 6.410 13 C -0.042 4.042 14 H 0.112 0.888 15 N -0.363 5.363 16 C -0.179 4.179 17 C -0.011 4.011 18 C -0.561 4.561 19 H 0.071 0.929 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.004 4.004 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.158 0.842 40 H 0.168 0.832 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.036 0.964 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.011 16.580 1.884 18.100 hybrid contribution -0.466 -0.902 -2.006 2.249 sum 6.545 15.678 -0.122 16.990 Atomic orbital electron populations 1.21813 0.94628 1.02727 1.00650 1.22174 0.96545 0.98651 0.95072 0.90787 1.21731 0.95780 1.00458 0.96877 1.20565 0.96070 0.96136 0.97876 0.90818 1.21860 0.99762 1.01246 0.97173 1.21049 1.03803 0.96743 0.96834 1.21181 0.86901 0.98239 0.94549 1.48035 1.14626 1.05754 1.65789 1.20815 0.81826 0.90291 0.75523 1.90619 1.33744 1.70274 1.46390 1.21513 0.97698 0.90321 0.94648 0.88757 1.58760 1.07673 1.15535 1.54318 1.22457 1.01201 1.01207 0.93080 1.19083 0.97232 0.87494 0.97307 1.21127 1.48266 0.91973 0.94756 0.92854 1.24993 0.95162 0.96884 0.97146 1.69942 1.48909 1.01717 1.32617 0.86672 0.78890 0.77557 0.84990 1.20233 1.21199 1.20245 1.20831 1.00918 0.80918 0.97689 0.91958 0.92822 0.93647 0.92609 0.91554 0.92536 0.92923 0.92703 0.91035 0.90443 0.90953 0.88566 0.84224 0.83218 0.92139 0.92897 0.96491 0.96439 0.92836 0.91063 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.44 37.16 0.31 -1.51 16 2 C -0.10 -1.17 3.17 -88.92 -0.28 -1.45 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -1.24 4.66 -27.19 -0.13 -1.37 16 5 C -0.09 -0.87 2.49 -92.29 -0.23 -1.10 16 6 H 0.07 0.68 6.30 -51.93 -0.33 0.35 16 7 C -0.14 -1.29 8.83 37.15 0.33 -0.96 16 8 C -0.15 -1.66 4.65 -30.19 -0.14 -1.80 16 9 C 0.11 1.29 5.34 -5.21 -0.03 1.26 16 10 N -0.61 -8.18 2.58 -175.86 -0.45 -8.63 16 11 C 0.53 8.82 6.59 -10.98 -0.07 8.75 16 12 O -0.53 -10.32 14.13 5.55 0.08 -10.24 16 13 C 0.07 1.26 2.36 -68.86 -0.16 1.09 16 14 H 0.09 1.55 6.49 -51.93 -0.34 1.21 16 15 N -0.83 -14.58 8.94 -5.65 -0.05 -14.64 16 16 C -0.14 -2.72 4.59 -26.73 -0.12 -2.85 16 17 C 0.03 0.62 4.74 -27.88 -0.13 0.49 16 18 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 19 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 22 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C 0.12 1.45 4.30 -4.93 -0.02 1.43 16 27 H 0.06 0.99 6.60 -51.93 -0.34 0.65 16 28 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.58 7.72 -51.93 -0.40 0.18 16 31 H 0.07 0.90 6.65 -51.93 -0.35 0.56 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.07 0.75 7.80 -51.93 -0.40 0.35 16 36 H 0.08 1.07 4.86 -51.93 -0.25 0.82 16 37 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 38 H 0.10 1.19 5.43 -51.93 -0.28 0.91 16 39 H 0.34 6.15 8.58 -39.29 -0.34 5.81 16 40 H 0.35 6.19 7.55 -39.29 -0.30 5.89 16 41 H 0.06 1.13 5.20 -51.93 -0.27 0.86 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.02 0.43 6.87 -51.93 -0.36 0.07 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.07 0.97 7.23 -51.92 -0.38 0.59 16 47 H 0.06 0.63 6.90 -51.93 -0.36 0.27 16 LS Contribution 347.96 15.07 5.24 5.24 Total: -1.00 -29.90 347.96 -8.58 -38.48 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -8.03 Total: 9.67 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -1.09 Total: -10.94 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.23 Total: -48.35 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.90 -8.58 -38.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332043853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.166 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds