Wall clock time and date at job start Tue Mar 31 2020 06:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.50166 * 2 1 4 4 C 1.53044 * 109.49792 * 239.93523 * 2 1 3 5 5 C 1.53038 * 109.53963 * 178.68621 * 4 2 1 6 6 H 1.09007 * 109.49536 * 301.41300 * 5 4 2 7 7 C 1.52999 * 109.49947 * 181.31785 * 5 4 2 8 8 C 1.53190 * 109.31269 * 61.36415 * 5 4 2 9 9 N 1.46927 * 108.77848 * 305.36473 * 8 5 4 10 10 C 1.34774 * 120.63644 * 233.58923 * 9 8 5 11 11 O 1.21589 * 120.00477 * 184.95258 * 10 9 8 12 12 N 1.34779 * 119.99388 * 4.67031 * 10 9 8 13 13 C 1.46503 * 119.99422 * 175.47890 * 12 10 9 14 14 C 1.53001 * 109.47043 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46925 * 300.00028 * 14 13 12 16 16 C 1.53002 * 109.47209 * 59.99576 * 14 13 12 17 17 C 1.50695 * 109.47298 * 179.97438 * 14 13 12 18 18 H 1.08002 * 119.99906 * 1.20532 * 17 14 13 19 19 C 1.37881 * 119.99867 * 181.20760 * 17 14 13 20 20 N 1.31519 * 119.99724 * 192.23721 * 19 17 14 21 21 Si 1.86796 * 120.00018 * 12.23816 * 19 17 14 22 22 H 1.48490 * 109.47253 * 84.69842 * 21 19 17 23 23 H 1.48508 * 109.46983 * 204.69880 * 21 19 17 24 24 H 1.48500 * 109.47130 * 324.69344 * 21 19 17 25 25 C 1.46931 * 118.73700 * 53.85996 * 9 8 5 26 26 H 1.09001 * 109.47617 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47415 * 300.06708 * 1 2 3 28 28 H 1.09002 * 109.47269 * 60.06582 * 1 2 3 29 29 H 1.08998 * 109.45799 * 58.66530 * 4 2 1 30 30 H 1.09001 * 109.44508 * 298.69894 * 4 2 1 31 31 H 1.09000 * 109.46650 * 300.15932 * 7 5 4 32 32 H 1.08997 * 109.46991 * 60.15835 * 7 5 4 33 33 H 1.08996 * 109.47051 * 180.16169 * 7 5 4 34 34 H 1.09000 * 109.58602 * 185.58060 * 8 5 4 35 35 H 1.08995 * 109.58543 * 65.15475 * 8 5 4 36 36 H 0.96994 * 120.00365 * 355.47968 * 12 10 9 37 37 H 1.09005 * 109.47101 * 299.99772 * 13 12 10 38 38 H 1.08995 * 109.47423 * 59.99898 * 13 12 10 39 39 H 1.08997 * 109.47300 * 68.88714 * 15 14 13 40 40 H 1.09000 * 109.46981 * 188.88575 * 15 14 13 41 41 H 1.08995 * 109.47133 * 308.88900 * 15 14 13 42 42 H 1.09005 * 109.47185 * 60.00388 * 16 14 13 43 43 H 1.09000 * 109.47271 * 180.02562 * 16 14 13 44 44 H 1.09000 * 109.47246 * 300.00618 * 16 14 13 45 45 H 0.97002 * 119.99927 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.58771 * 65.92677 * 25 9 8 47 47 H 1.08994 * 109.58781 * 186.35216 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7227 -1.2486 5 6 3.5708 -0.6948 -1.2662 6 1 3.9159 0.3392 -1.2540 7 6 4.0797 -1.3887 -2.5312 8 6 4.1052 -1.4268 -0.0312 9 7 3.5046 -0.8296 1.1694 10 6 4.2810 -0.3871 2.1782 11 8 3.7712 0.0220 3.2034 12 7 5.6229 -0.4036 2.0528 13 6 6.4640 0.1681 3.1073 14 6 7.9370 0.0225 2.7198 15 6 8.2743 -1.4597 2.5456 16 6 8.1940 0.7619 1.4052 17 6 8.8023 0.6111 3.8041 18 1 8.3480 1.0280 4.6907 19 6 10.1740 0.6173 3.6642 20 7 10.9388 0.9036 4.6951 21 14 10.9459 0.2191 2.0104 22 1 10.9915 1.4472 1.1769 23 1 12.3256 -0.2899 2.2179 24 1 10.1346 -0.8167 1.3219 25 6 2.0410 -0.7293 1.2518 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5149 0.8894 28 1 -0.3634 0.5128 -0.8906 29 1 1.6582 -0.2239 -2.1390 30 1 1.6966 -1.7569 -1.2355 31 1 3.7330 -2.4220 -2.5432 32 1 3.6992 -0.8675 -3.4096 33 1 5.1695 -1.3710 -2.5419 34 1 5.1895 -1.3247 0.0134 35 1 3.8374 -2.4818 -0.0875 36 1 6.0316 -0.7938 1.2645 37 1 6.2240 1.2242 3.2310 38 1 6.2806 -0.3583 4.0439 39 1 7.7669 -1.8464 1.6618 40 1 9.3515 -1.5755 2.4258 41 1 7.9449 -2.0131 3.4249 42 1 7.9537 1.8178 1.5292 43 1 9.2433 0.6577 1.1288 44 1 7.5681 0.3366 0.6207 45 1 11.9038 0.9076 4.5968 46 1 1.6083 -1.7287 1.2980 47 1 1.7629 -0.1670 2.1431 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334710457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:49 Heat of formation + Delta-G solvation = -30.021339 kcal Electronic energy + Delta-G solvation = -23743.321770 eV Core-core repulsion = 20540.185832 eV Total energy + Delta-G solvation = -3203.135938 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.36204 -38.18823 -36.65269 -34.15692 -33.50214 -32.94574 -31.37192 -27.17211 -26.95874 -26.39450 -26.18368 -25.19491 -24.24850 -21.05741 -20.62477 -19.46637 -19.23645 -17.81865 -16.23070 -15.95346 -15.46725 -15.28293 -15.01679 -14.99624 -14.17045 -13.99100 -13.75722 -13.18449 -13.01954 -13.00044 -12.91003 -12.65322 -12.49589 -12.31647 -12.21248 -12.09033 -11.98859 -11.81605 -11.31290 -11.08638 -10.99655 -10.77097 -10.52831 -10.39005 -10.29331 -10.12910 -10.03140 -9.72479 -9.10277 -8.72121 -8.67609 -8.48006 -8.21415 -6.12927 -4.10811 2.89243 3.23952 3.30897 3.38727 3.53206 4.17350 4.36287 4.44542 4.56366 4.58335 4.72190 5.04655 5.13508 5.17936 5.23104 5.28673 5.37062 5.44435 5.45061 5.54151 5.62884 5.67695 5.74987 5.81619 5.84744 5.93124 5.97396 6.01893 6.05774 6.10002 6.22020 6.35460 6.43541 6.54661 6.59785 6.66027 6.72413 6.85183 7.01740 7.19273 7.26586 7.45042 7.73984 8.29156 8.48297 8.91646 8.96154 9.50413 11.00245 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026423 B = 0.004304 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.444158 B = 6504.047187 C = 7219.279108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 H 0.074 0.926 4 C -0.107 4.107 5 C -0.109 4.109 6 H 0.076 0.924 7 C -0.146 4.146 8 C 0.117 3.883 9 N -0.635 5.635 10 C 0.703 3.297 11 O -0.594 6.594 12 N -0.739 5.739 13 C 0.159 3.841 14 C 0.028 3.972 15 C -0.143 4.143 16 C -0.144 4.144 17 C -0.511 4.511 18 H 0.077 0.923 19 C 0.075 3.925 20 N -0.893 5.893 21 Si 0.883 3.117 22 H -0.286 1.286 23 H -0.305 1.305 24 H -0.246 1.246 25 C 0.136 3.864 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.391 0.609 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.019 0.981 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.040 0.960 44 H 0.027 0.973 45 H 0.264 0.736 46 H 0.060 0.940 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.800 -5.684 -15.658 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.093 0.907 4 C -0.144 4.144 5 C -0.128 4.128 6 H 0.094 0.906 7 C -0.204 4.204 8 C -0.007 4.007 9 N -0.373 5.373 10 C 0.404 3.596 11 O -0.473 6.473 12 N -0.396 5.396 13 C 0.036 3.964 14 C 0.027 3.973 15 C -0.201 4.201 16 C -0.201 4.201 17 C -0.549 4.549 18 H 0.095 0.905 19 C -0.128 4.128 20 N -0.530 5.530 21 Si 0.716 3.284 22 H -0.214 1.214 23 H -0.234 1.234 24 H -0.173 1.173 25 C 0.012 3.988 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.228 0.772 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.046 0.954 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.946 -5.334 -14.770 23.104 hybrid contribution 0.868 -0.286 -1.337 1.620 sum -16.078 -5.620 -16.107 23.442 Atomic orbital electron populations 1.21750 0.94515 1.01918 1.01986 1.21623 0.95747 1.00316 0.95163 0.90746 1.21632 0.94533 1.00732 0.97526 1.21531 0.96068 1.00653 0.94579 0.90584 1.21776 1.01355 1.00511 0.96726 1.21656 0.97855 0.96883 0.84288 1.47256 1.06343 1.65629 1.18089 1.15941 0.81897 0.78696 0.83034 1.90884 1.73467 1.54532 1.28389 1.45677 1.04052 1.64561 1.25265 1.21377 0.89085 0.97403 0.88516 1.18735 0.91540 0.92753 0.94309 1.22343 1.01371 0.97882 0.98475 1.22301 0.99130 1.00998 0.97657 1.20728 0.90496 1.39933 1.03714 0.90484 1.24976 0.97092 0.94411 0.96298 1.69941 1.04755 1.48832 1.29434 0.87352 0.76984 0.79017 0.85053 1.21392 1.23372 1.17251 1.21538 0.78479 1.00138 0.98599 0.92563 0.92316 0.92501 0.91799 0.91805 0.92487 0.92356 0.92268 0.90455 0.91539 0.77209 0.92303 0.92035 0.96169 0.92315 0.93351 0.92769 0.94171 0.95425 0.92578 0.92150 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.20 37.16 0.34 -0.72 16 2 C -0.11 -1.01 2.89 -90.27 -0.26 -1.27 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.11 -0.85 4.45 -26.69 -0.12 -0.97 16 5 C -0.11 -0.96 2.87 -90.50 -0.26 -1.22 16 6 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 7 C -0.15 -1.04 9.20 37.16 0.34 -0.70 16 8 C 0.12 1.22 5.71 -3.71 -0.02 1.20 16 9 N -0.64 -8.61 2.97 -178.23 -0.53 -9.14 16 10 C 0.70 12.53 8.30 -86.92 -0.72 11.81 16 11 O -0.59 -12.89 15.78 5.29 0.08 -12.81 16 12 N -0.74 -12.91 4.92 -65.22 -0.32 -13.23 16 13 C 0.16 3.31 4.50 -4.04 -0.02 3.29 16 14 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 15 C -0.14 -2.95 7.52 37.16 0.28 -2.67 16 16 C -0.14 -2.94 7.58 37.16 0.28 -2.66 16 17 C -0.51 -13.84 8.62 -34.44 -0.30 -14.14 16 18 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 19 C 0.07 2.08 5.35 -17.82 -0.10 1.99 16 20 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 21 Si 0.88 21.05 22.75 -169.99 -3.87 17.18 16 22 H -0.29 -6.79 7.07 56.52 0.40 -6.39 16 23 H -0.31 -7.44 7.11 56.52 0.40 -7.04 16 24 H -0.25 -5.32 4.60 56.52 0.26 -5.06 16 25 C 0.14 1.59 5.73 -3.48 -0.02 1.57 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.82 5.56 -51.93 -0.29 0.54 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.39 5.99 3.71 -40.82 -0.15 5.84 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.02 0.34 7.12 -51.93 -0.37 -0.03 16 40 H 0.06 1.28 4.08 -51.93 -0.21 1.07 16 41 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.04 0.86 2.37 -51.93 -0.12 0.74 16 44 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.09 1.27 7.03 -51.93 -0.37 0.90 16 LS Contribution 344.85 15.07 5.20 5.20 Total: -1.00 -31.33 344.85 -7.64 -38.97 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.33 Total: 3.82 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -0.65 Total: -3.94 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.08 Total: -48.43 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -3.87 Total: 17.18 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.33 -7.64 -38.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334710457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.949 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds