Wall clock time and date at job start Tue Mar 31 2020 06:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.50166 * 2 1 4 4 C 1.53044 * 109.49792 * 239.93523 * 2 1 3 5 5 C 1.53038 * 109.53963 * 178.68621 * 4 2 1 6 6 H 1.09007 * 109.49536 * 301.41300 * 5 4 2 7 7 C 1.52999 * 109.49947 * 181.31785 * 5 4 2 8 8 C 1.53190 * 109.31269 * 61.36415 * 5 4 2 9 9 N 1.46927 * 108.77848 * 305.36473 * 8 5 4 10 10 C 1.34774 * 120.63644 * 233.58923 * 9 8 5 11 11 O 1.21589 * 120.00477 * 184.95258 * 10 9 8 12 12 N 1.34779 * 119.99388 * 4.67031 * 10 9 8 13 13 C 1.46503 * 119.99422 * 175.47890 * 12 10 9 14 14 C 1.53001 * 109.47043 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46925 * 300.00028 * 14 13 12 16 16 C 1.53002 * 109.47209 * 59.99576 * 14 13 12 17 17 C 1.50695 * 109.47298 * 179.97438 * 14 13 12 18 18 H 1.08002 * 119.99906 * 1.20532 * 17 14 13 19 19 C 1.37881 * 119.99867 * 181.20760 * 17 14 13 20 20 N 1.31519 * 119.99724 * 192.23721 * 19 17 14 21 21 Si 1.86796 * 120.00018 * 12.23816 * 19 17 14 22 22 H 1.48490 * 109.47253 * 84.69842 * 21 19 17 23 23 H 1.48508 * 109.46983 * 204.69880 * 21 19 17 24 24 H 1.48500 * 109.47130 * 324.69344 * 21 19 17 25 25 C 1.46931 * 118.73700 * 53.85996 * 9 8 5 26 26 H 1.09001 * 109.47617 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47415 * 300.06708 * 1 2 3 28 28 H 1.09002 * 109.47269 * 60.06582 * 1 2 3 29 29 H 1.08998 * 109.45799 * 58.66530 * 4 2 1 30 30 H 1.09001 * 109.44508 * 298.69894 * 4 2 1 31 31 H 1.09000 * 109.46650 * 300.15932 * 7 5 4 32 32 H 1.08997 * 109.46991 * 60.15835 * 7 5 4 33 33 H 1.08996 * 109.47051 * 180.16169 * 7 5 4 34 34 H 1.09000 * 109.58602 * 185.58060 * 8 5 4 35 35 H 1.08995 * 109.58543 * 65.15475 * 8 5 4 36 36 H 0.96994 * 120.00365 * 355.47968 * 12 10 9 37 37 H 1.09005 * 109.47101 * 299.99772 * 13 12 10 38 38 H 1.08995 * 109.47423 * 59.99898 * 13 12 10 39 39 H 1.08997 * 109.47300 * 68.88714 * 15 14 13 40 40 H 1.09000 * 109.46981 * 188.88575 * 15 14 13 41 41 H 1.08995 * 109.47133 * 308.88900 * 15 14 13 42 42 H 1.09005 * 109.47185 * 60.00388 * 16 14 13 43 43 H 1.09000 * 109.47271 * 180.02562 * 16 14 13 44 44 H 1.09000 * 109.47246 * 300.00618 * 16 14 13 45 45 H 0.97002 * 119.99927 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.58771 * 65.92677 * 25 9 8 47 47 H 1.08994 * 109.58781 * 186.35216 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7227 -1.2486 5 6 3.5708 -0.6948 -1.2662 6 1 3.9159 0.3392 -1.2540 7 6 4.0797 -1.3887 -2.5312 8 6 4.1052 -1.4268 -0.0312 9 7 3.5046 -0.8296 1.1694 10 6 4.2810 -0.3871 2.1782 11 8 3.7712 0.0220 3.2034 12 7 5.6229 -0.4036 2.0528 13 6 6.4640 0.1681 3.1073 14 6 7.9370 0.0225 2.7198 15 6 8.2743 -1.4597 2.5456 16 6 8.1940 0.7619 1.4052 17 6 8.8023 0.6111 3.8041 18 1 8.3480 1.0280 4.6907 19 6 10.1740 0.6173 3.6642 20 7 10.9388 0.9036 4.6951 21 14 10.9459 0.2191 2.0104 22 1 10.9915 1.4472 1.1769 23 1 12.3256 -0.2899 2.2179 24 1 10.1346 -0.8167 1.3219 25 6 2.0410 -0.7293 1.2518 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5149 0.8894 28 1 -0.3634 0.5128 -0.8906 29 1 1.6582 -0.2239 -2.1390 30 1 1.6966 -1.7569 -1.2355 31 1 3.7330 -2.4220 -2.5432 32 1 3.6992 -0.8675 -3.4096 33 1 5.1695 -1.3710 -2.5419 34 1 5.1895 -1.3247 0.0134 35 1 3.8374 -2.4818 -0.0875 36 1 6.0316 -0.7938 1.2645 37 1 6.2240 1.2242 3.2310 38 1 6.2806 -0.3583 4.0439 39 1 7.7669 -1.8464 1.6618 40 1 9.3515 -1.5755 2.4258 41 1 7.9449 -2.0131 3.4249 42 1 7.9537 1.8178 1.5292 43 1 9.2433 0.6577 1.1288 44 1 7.5681 0.3366 0.6207 45 1 11.9038 0.9076 4.5968 46 1 1.6083 -1.7287 1.2980 47 1 1.7629 -0.1670 2.1431 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334710457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:49 Heat of formation + Delta-G solvation = -50.407553 kcal Electronic energy + Delta-G solvation = -23744.205783 eV Core-core repulsion = 20540.185832 eV Total energy + Delta-G solvation = -3204.019951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.57390 -39.36003 -38.26678 -35.36335 -34.49128 -34.34528 -33.21971 -28.26585 -28.01814 -27.57780 -27.33506 -27.03966 -25.66336 -21.77680 -21.68987 -20.97589 -20.56158 -19.13000 -18.08417 -17.35263 -17.04415 -16.66813 -15.94309 -15.82331 -15.51881 -15.20677 -15.17786 -14.82441 -14.46102 -14.15000 -13.99801 -13.88699 -13.79904 -13.68426 -13.23780 -12.96321 -12.86760 -12.82421 -12.49988 -12.37235 -12.15812 -11.92268 -11.80491 -11.76940 -11.76132 -11.51259 -11.27861 -11.10761 -11.03070 -10.63632 -10.39479 -10.15827 -9.42607 -8.29281 -6.32334 1.36903 1.38141 1.51650 1.67182 2.13718 2.35451 2.97758 3.06977 3.71061 3.83626 3.87805 3.97141 4.06305 4.31092 4.32098 4.36170 4.39567 4.51257 4.63181 4.66934 4.73946 4.75336 4.80368 4.83593 4.85556 4.87235 4.92099 4.94004 5.03967 5.07492 5.10439 5.17229 5.23250 5.31525 5.34380 5.39945 5.42082 5.54326 5.55987 5.60143 5.72883 5.78755 5.96430 6.30998 6.71838 7.00100 7.32728 7.57330 8.88047 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026423 B = 0.004304 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.444158 B = 6504.047187 C = 7219.279108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.055 0.945 4 C -0.102 4.102 5 C -0.105 4.105 6 H 0.060 0.940 7 C -0.141 4.141 8 C 0.109 3.891 9 N -0.627 5.627 10 C 0.697 3.303 11 O -0.642 6.642 12 N -0.727 5.727 13 C 0.176 3.824 14 C 0.028 3.972 15 C -0.141 4.141 16 C -0.142 4.142 17 C -0.518 4.518 18 H 0.026 0.974 19 C 0.016 3.984 20 N -0.948 5.948 21 Si 0.943 3.057 22 H -0.281 1.281 23 H -0.314 1.314 24 H -0.199 1.199 25 C 0.131 3.869 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.405 0.595 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.039 0.961 42 H 0.045 0.955 43 H 0.037 0.963 44 H 0.070 0.930 45 H 0.265 0.735 46 H 0.079 0.921 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.995 -7.751 -20.116 28.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.073 0.927 4 C -0.140 4.140 5 C -0.124 4.124 6 H 0.079 0.921 7 C -0.199 4.199 8 C -0.013 4.013 9 N -0.363 5.363 10 C 0.398 3.602 11 O -0.524 6.524 12 N -0.385 5.385 13 C 0.051 3.949 14 C 0.027 3.973 15 C -0.199 4.199 16 C -0.199 4.199 17 C -0.556 4.556 18 H 0.044 0.956 19 C -0.182 4.182 20 N -0.587 5.587 21 Si 0.772 3.228 22 H -0.208 1.208 23 H -0.243 1.243 24 H -0.123 1.123 25 C 0.008 3.992 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.245 0.755 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.098 0.902 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.190 -7.434 -19.302 27.544 hybrid contribution 1.117 0.391 0.163 1.195 sum -17.072 -7.042 -19.139 26.596 Atomic orbital electron populations 1.21725 0.92949 1.02831 1.02265 1.21557 0.96974 0.99022 0.94656 0.92680 1.21629 0.93906 1.01447 0.96991 1.21494 0.96611 0.99755 0.94566 0.92119 1.21742 1.01387 1.00999 0.95756 1.21979 0.97911 0.98049 0.83361 1.47333 1.06801 1.64356 1.17857 1.16133 0.81997 0.78636 0.83388 1.90855 1.74250 1.56583 1.30703 1.45300 1.03833 1.64576 1.24815 1.20892 0.89270 0.96036 0.88685 1.18656 0.90831 0.94052 0.93763 1.22257 1.01207 0.96149 1.00248 1.22223 0.99693 1.00639 0.97355 1.21019 0.91445 1.39469 1.03675 0.95567 1.25890 0.97547 0.94364 1.00360 1.70109 1.05069 1.51255 1.32305 0.86379 0.75850 0.80292 0.80272 1.20800 1.24340 1.12259 1.21717 0.77482 1.01130 0.98862 0.91303 0.93082 0.91251 0.90425 0.90397 0.91345 0.91607 0.92221 0.90317 0.89415 0.75503 0.94435 0.94550 0.91802 0.93094 0.94169 0.93587 0.94520 0.91123 0.92647 0.90237 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.20 71.98 0.66 -1.08 16 2 C -0.10 -1.69 2.89 -10.57 -0.03 -1.72 16 3 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.10 -1.25 4.45 30.62 0.14 -1.11 16 5 C -0.10 -1.46 2.87 -10.72 -0.03 -1.49 16 6 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 7 C -0.14 -1.38 9.20 71.98 0.66 -0.72 16 8 C 0.11 1.89 5.71 86.36 0.49 2.38 16 9 N -0.63 -15.90 2.97 -836.05 -2.48 -18.38 16 10 C 0.70 24.55 8.30 179.05 1.49 26.04 16 11 O -0.64 -28.71 15.78 -3.99 -0.06 -28.78 16 12 N -0.73 -24.39 4.92 -478.52 -2.35 -26.74 16 13 C 0.18 7.43 4.50 86.38 0.39 7.82 16 14 C 0.03 1.22 0.50 -52.93 -0.03 1.20 16 15 C -0.14 -5.42 7.52 71.98 0.54 -4.88 16 16 C -0.14 -5.38 7.58 71.98 0.55 -4.84 16 17 C -0.52 -29.08 8.62 25.60 0.22 -28.86 16 18 H 0.03 1.68 7.99 -2.91 -0.02 1.65 16 19 C 0.02 0.89 5.35 84.66 0.45 1.34 16 20 N -0.95 -59.36 13.96 21.45 0.30 -59.06 16 21 Si 0.94 42.47 22.75 68.60 1.56 44.03 16 22 H -0.28 -12.36 7.07 99.48 0.70 -11.66 16 23 H -0.31 -14.57 7.11 99.48 0.71 -13.86 16 24 H -0.20 -7.47 4.60 99.48 0.46 -7.02 16 25 C 0.13 2.89 5.73 86.51 0.50 3.38 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 1.34 5.56 -2.39 -0.01 1.32 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.41 10.99 3.71 -92.71 -0.34 10.65 16 37 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 1.89 7.12 -2.39 -0.02 1.87 16 40 H 0.05 2.04 4.08 -2.39 -0.01 2.03 16 41 H 0.04 1.59 8.12 -2.39 -0.02 1.57 16 42 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.04 1.43 2.37 -2.39 -0.01 1.42 16 44 H 0.07 2.06 6.86 -2.39 -0.02 2.04 16 45 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 46 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.06 1.79 7.03 -2.39 -0.02 1.78 16 Total: -1.00 -72.96 344.85 3.30 -69.65 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.34 Total: 21.81 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 6.00 Total: -2.54 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -4.53 Total: -104.19 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.06 Total: -28.78 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.56 Total: 44.03 kcal Total: -72.96 3.30 -69.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334710457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.246 kcal (2) G-P(sol) polarization free energy of solvation -72.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds