Wall clock time and date at job start Tue Mar 31 2020 06:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.49423 * 2 1 4 4 C 1.53038 * 109.49765 * 239.94241 * 2 1 3 5 5 C 1.53044 * 109.53440 * 301.41112 * 4 2 1 6 6 H 1.08999 * 109.49869 * 58.61467 * 5 4 2 7 7 C 1.52996 * 109.49683 * 178.68548 * 5 4 2 8 8 C 1.53201 * 109.31155 * 298.63393 * 5 4 2 9 9 N 1.46927 * 108.77224 * 54.63733 * 8 5 4 10 10 C 1.34780 * 120.63241 * 126.41140 * 9 8 5 11 11 O 1.21584 * 120.00090 * 174.95583 * 10 9 8 12 12 N 1.34778 * 119.99595 * 354.96562 * 10 9 8 13 13 C 1.46499 * 119.99939 * 185.07229 * 12 10 9 14 14 C 1.52998 * 109.47357 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47316 * 299.99968 * 14 13 12 16 16 C 1.53002 * 109.46783 * 60.00015 * 14 13 12 17 17 C 1.50702 * 109.47178 * 179.97438 * 14 13 12 18 18 H 1.07996 * 119.99900 * 0.02562 * 17 14 13 19 19 C 1.37873 * 119.99822 * 179.97438 * 17 14 13 20 20 N 1.31516 * 120.00322 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 119.99945 * 180.02562 * 19 17 14 22 22 H 1.48493 * 109.46875 * 60.00179 * 21 19 17 23 23 H 1.48501 * 109.47244 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46933 * 300.00297 * 21 19 17 25 25 C 1.46932 * 118.74091 * 306.39000 * 9 8 5 26 26 H 1.08995 * 109.47326 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47360 * 300.06119 * 1 2 3 28 28 H 1.09000 * 109.47312 * 60.05873 * 1 2 3 29 29 H 1.08997 * 109.46320 * 61.42602 * 4 2 1 30 30 H 1.08997 * 109.45889 * 181.39420 * 4 2 1 31 31 H 1.09002 * 109.47113 * 59.99965 * 7 5 4 32 32 H 1.09001 * 109.46870 * 179.97438 * 7 5 4 33 33 H 1.08993 * 109.47233 * 299.99976 * 7 5 4 34 34 H 1.08995 * 109.58319 * 174.42239 * 8 5 4 35 35 H 1.08991 * 109.58711 * 294.70785 * 8 5 4 36 36 H 0.96998 * 120.00525 * 5.06833 * 12 10 9 37 37 H 1.09003 * 109.47159 * 299.99750 * 13 12 10 38 38 H 1.09002 * 109.47091 * 59.99796 * 13 12 10 39 39 H 1.09010 * 109.47185 * 59.99955 * 15 14 13 40 40 H 1.08999 * 109.47462 * 179.97438 * 15 14 13 41 41 H 1.08994 * 109.47464 * 300.00068 * 15 14 13 42 42 H 1.09003 * 109.47159 * 60.00196 * 16 14 13 43 43 H 1.08999 * 109.47083 * 180.02562 * 16 14 13 44 44 H 1.08997 * 109.47272 * 300.00095 * 16 14 13 45 45 H 0.96998 * 120.00395 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.58034 * 293.82481 * 25 9 8 47 47 H 1.09002 * 109.58726 * 173.39589 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7226 -1.2486 5 6 1.5030 -2.1553 -1.2667 6 1 0.4132 -2.1350 -1.2553 7 6 1.9873 -2.8666 -2.5318 8 6 2.0141 -2.9040 -0.0317 9 7 1.6516 -2.1385 1.1689 10 6 0.9748 -2.7227 2.1774 11 8 0.7607 -2.1062 3.2033 12 7 0.5355 -3.9904 2.0488 13 6 -0.2947 -4.5879 3.0976 14 6 -0.6552 -6.0226 2.7073 15 6 -1.4293 -6.0130 1.3877 16 6 0.6256 -6.8430 2.5414 17 6 -1.5087 -6.6374 3.7865 18 1 -1.7684 -6.0622 4.6629 19 6 -1.9588 -7.9339 3.6545 20 7 -1.6430 -8.6342 2.5871 21 14 -3.0174 -8.6957 4.9919 22 1 -4.2601 -7.8992 5.1533 23 1 -3.3672 -10.0884 4.6131 24 1 -2.2658 -8.7055 6.2726 25 6 2.0413 -0.7241 1.2493 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5148 0.8895 28 1 -0.3634 0.5129 -0.8905 29 1 1.6987 -0.1951 -2.1390 30 1 3.1305 -0.7439 -1.2355 31 1 3.0771 -2.8876 -2.5421 32 1 1.6044 -3.8870 -2.5440 33 1 1.6259 -2.3320 -3.4101 34 1 1.5555 -3.8918 0.0124 35 1 3.0977 -3.0064 -0.0890 36 1 0.7690 -4.5071 1.2619 37 1 0.2567 -4.5944 4.0379 38 1 -1.2073 -4.0036 3.2156 39 1 -0.8116 -5.5685 0.6073 40 1 -1.6857 -7.0352 1.1094 41 1 -2.3417 -5.4286 1.5059 42 1 1.1771 -6.8499 3.4816 43 1 0.3688 -7.8651 2.2629 44 1 1.2433 -6.3985 1.7611 45 1 -1.9594 -9.5465 2.4944 46 1 3.1275 -0.6466 1.2977 47 1 1.6007 -0.2737 2.1388 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334710460.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:52 Heat of formation + Delta-G solvation = -46.467204 kcal Electronic energy + Delta-G solvation = -23928.648355 eV Core-core repulsion = 20724.799270 eV Total energy + Delta-G solvation = -3203.849084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.36514 -38.11932 -36.29447 -33.81868 -33.38669 -32.75504 -30.67004 -27.13199 -26.80578 -25.89749 -25.70263 -25.32640 -24.16657 -21.66540 -20.21841 -18.87204 -18.69844 -17.86327 -16.02682 -15.69920 -15.39008 -15.03846 -14.80363 -14.37536 -14.18551 -13.98290 -13.65596 -13.41469 -12.97896 -12.84845 -12.61974 -12.32217 -12.13858 -12.06534 -11.68982 -11.62266 -11.36240 -11.16240 -11.11906 -10.93565 -10.81585 -10.70634 -10.55646 -10.36799 -10.34955 -10.16973 -9.64467 -9.60159 -9.26278 -8.77334 -8.59163 -8.36931 -8.05212 -5.99655 -4.09454 3.02023 3.32064 3.36042 3.40239 3.65705 4.29309 4.43247 4.58363 4.64217 4.70429 4.87614 5.07552 5.25508 5.27045 5.30968 5.41698 5.53996 5.55522 5.62881 5.66415 5.72988 5.86055 5.88390 5.94518 6.02886 6.11728 6.13951 6.25456 6.35968 6.40416 6.53354 6.69867 6.83914 6.84587 6.95908 7.05966 7.14859 7.32561 7.43217 7.58300 7.71997 8.03412 8.14868 8.40739 8.48508 8.90145 9.09321 9.56096 11.01770 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.004134 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.238438 B = 6771.596075 C = 7254.048040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.078 0.922 4 C -0.107 4.107 5 C -0.111 4.111 6 H 0.080 0.920 7 C -0.146 4.146 8 C 0.117 3.883 9 N -0.632 5.632 10 C 0.702 3.298 11 O -0.599 6.599 12 N -0.734 5.734 13 C 0.150 3.850 14 C 0.056 3.944 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.505 4.505 18 H 0.057 0.943 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.135 3.865 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.393 0.607 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.004 0.996 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.004 0.996 45 H 0.260 0.740 46 H 0.059 0.941 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.063 12.567 -10.985 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.096 0.904 4 C -0.144 4.144 5 C -0.130 4.130 6 H 0.098 0.902 7 C -0.204 4.204 8 C -0.007 4.007 9 N -0.371 5.371 10 C 0.403 3.597 11 O -0.478 6.478 12 N -0.391 5.391 13 C 0.026 3.974 14 C 0.055 3.945 15 C -0.186 4.186 16 C -0.187 4.187 17 C -0.543 4.543 18 H 0.075 0.925 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C 0.011 3.989 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.230 0.770 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.023 0.977 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.103 0.897 44 H 0.023 0.977 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.833 12.793 -10.271 18.180 hybrid contribution -0.445 -0.720 0.243 0.880 sum 7.388 12.073 -10.028 17.347 Atomic orbital electron populations 1.21818 0.94741 1.02440 1.01210 1.21525 0.96792 0.99150 0.95238 0.90364 1.21586 1.00295 0.95045 0.97490 1.21573 1.01550 0.95316 0.94558 0.90182 1.21781 1.01223 1.00649 0.96746 1.21642 0.99870 0.94890 0.84260 1.47196 1.60507 1.11284 1.18076 1.15971 0.78428 0.82246 0.83010 1.90860 1.63778 1.64691 1.28443 1.45682 1.55523 1.12220 1.25655 1.21574 0.92041 0.95295 0.88440 1.18356 0.93448 0.88053 0.94607 1.21810 0.97733 1.02952 0.96129 1.21812 0.96089 1.03562 0.97188 1.20946 1.31065 0.97896 1.04423 0.92478 1.24870 0.96016 0.96964 0.95620 1.69794 1.45525 1.10044 1.27172 0.86634 0.80887 0.78113 0.82222 1.20295 1.21359 1.20289 1.21415 0.98696 0.80159 0.98610 0.92098 0.92716 0.93084 0.91868 0.91899 0.92587 0.92196 0.92447 0.90355 0.91659 0.77002 0.92952 0.93127 0.97725 0.89647 0.95472 0.95432 0.89650 0.97728 0.92998 0.92297 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.70 37.16 0.32 -1.28 16 2 C -0.11 -1.05 3.21 -90.50 -0.29 -1.34 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.11 -0.92 4.71 -26.69 -0.13 -1.04 16 5 C -0.11 -1.06 2.53 -90.50 -0.23 -1.29 16 6 H 0.08 0.88 6.34 -51.93 -0.33 0.55 16 7 C -0.15 -1.17 9.20 37.16 0.34 -0.83 16 8 C 0.12 1.34 5.72 -3.71 -0.02 1.32 16 9 N -0.63 -9.03 2.41 -178.49 -0.43 -9.46 16 10 C 0.70 13.16 8.30 -86.91 -0.72 12.44 16 11 O -0.60 -13.41 15.79 5.29 0.08 -13.33 16 12 N -0.73 -13.84 4.87 -65.22 -0.32 -14.16 16 13 C 0.15 3.30 4.51 -4.04 -0.02 3.28 16 14 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 15 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 16 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 17 C -0.50 -13.34 8.01 -34.44 -0.28 -13.62 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 20 N -0.89 -23.67 9.35 55.43 0.52 -23.15 16 21 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.13 1.65 5.81 -3.71 -0.02 1.63 16 26 H 0.06 0.80 5.97 -51.93 -0.31 0.49 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.95 5.57 -51.93 -0.29 0.66 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.39 6.74 3.62 -40.82 -0.15 6.59 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.00 0.08 6.86 -51.92 -0.36 -0.28 16 40 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 44 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 45 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.09 1.31 7.03 -51.93 -0.37 0.95 16 LS Contribution 350.21 15.07 5.28 5.28 Total: -1.00 -28.84 350.21 -8.74 -37.58 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -8.24 Total: 4.52 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -0.61 Total: -3.10 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.23 Total: -46.78 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.84 -8.74 -37.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334710460.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.882 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds