Wall clock time and date at job start Tue Mar 31 2020 06:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.44935 * 2 1 4 4 C 1.53041 * 109.46056 * 240.03445 * 2 1 3 5 5 C 1.53185 * 109.31507 * 178.61482 * 4 2 1 6 6 N 1.46926 * 108.77644 * 54.63483 * 5 4 2 7 7 C 1.34772 * 120.63321 * 126.37182 * 6 5 4 8 8 O 1.21592 * 120.00338 * 174.98376 * 7 6 5 9 9 N 1.34781 * 120.00178 * 354.98166 * 7 6 5 10 10 C 1.46496 * 119.99965 * 185.07633 * 9 7 6 11 11 C 1.53002 * 109.46738 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47332 * 299.99716 * 11 10 9 13 13 C 1.53003 * 109.47333 * 59.99820 * 11 10 9 14 14 C 1.50701 * 109.47128 * 179.97438 * 11 10 9 15 15 H 1.08007 * 119.99988 * 359.97438 * 14 11 10 16 16 C 1.37880 * 120.00310 * 180.02562 * 14 11 10 17 17 N 1.31518 * 119.99674 * 359.97438 * 16 14 11 18 18 Si 1.86790 * 120.00201 * 180.02562 * 16 14 11 19 19 H 1.48507 * 109.47321 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47435 * 119.99934 * 18 16 14 21 21 H 1.48499 * 109.47393 * 239.99501 * 18 16 14 22 22 C 1.46930 * 118.73898 * 306.39338 * 6 5 4 23 23 C 1.53043 * 109.46153 * 119.96908 * 2 1 3 24 24 H 1.09001 * 109.49113 * 301.33413 * 23 2 1 25 25 C 1.53001 * 109.52544 * 61.41414 * 23 2 1 26 26 H 1.08998 * 109.47146 * 300.03534 * 1 2 3 27 27 H 1.09000 * 109.47425 * 60.03691 * 1 2 3 28 28 H 1.09005 * 109.47292 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.50088 * 58.65988 * 4 2 1 30 30 H 1.09011 * 109.49938 * 298.56647 * 4 2 1 31 31 H 1.09004 * 109.58923 * 294.84837 * 5 4 2 32 32 H 1.09006 * 109.70932 * 174.49096 * 5 4 2 33 33 H 0.96994 * 119.99335 * 5.07381 * 9 7 6 34 34 H 1.09001 * 109.47054 * 299.99559 * 10 9 7 35 35 H 1.08994 * 109.47665 * 59.99924 * 10 9 7 36 36 H 1.09000 * 109.47046 * 60.00335 * 12 11 10 37 37 H 1.09000 * 109.47122 * 180.02562 * 12 11 10 38 38 H 1.08994 * 109.46917 * 299.99980 * 12 11 10 39 39 H 1.09001 * 109.47263 * 59.99947 * 13 11 10 40 40 H 1.09000 * 109.47364 * 179.97438 * 13 11 10 41 41 H 1.09000 * 109.47242 * 299.99786 * 13 11 10 42 42 H 0.96994 * 119.99805 * 180.02562 * 17 16 14 43 43 H 1.09003 * 109.58449 * 293.82456 * 22 6 5 44 44 H 1.08991 * 109.58919 * 173.39566 * 22 6 5 45 45 H 1.09000 * 109.46783 * 179.97438 * 25 23 2 46 46 H 1.09002 * 109.46962 * 299.92578 * 25 23 2 47 47 H 1.09001 * 109.46875 * 59.92528 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2489 -0.0001 7 6 4.9614 -2.2578 0.0000 8 8 5.4336 -2.6518 1.0489 9 7 5.3316 -2.8302 -1.1628 10 6 6.2161 -3.9979 -1.1553 11 6 6.4782 -4.4483 -2.5939 12 6 5.1523 -4.8171 -3.2624 13 6 7.1423 -3.3103 -3.3717 14 6 7.3886 -5.6492 -2.5864 15 1 7.7451 -6.0507 -1.6492 16 6 7.7674 -6.2346 -3.7758 17 7 7.3338 -5.7453 -4.9170 18 14 8.8953 -7.7235 -3.7664 19 1 9.2387 -8.0757 -2.3652 20 1 8.2065 -8.8705 -4.4109 21 1 10.1380 -7.4080 -4.5158 22 6 3.5714 -0.6886 1.2642 23 6 2.0399 -0.7208 1.2501 24 1 1.6572 -0.2207 2.1398 25 6 1.5597 -2.1734 1.2344 26 1 -0.3633 0.5144 0.8896 27 1 -0.3634 0.5132 -0.8903 28 1 -0.3634 -1.0277 0.0005 29 1 1.6572 -0.2208 -2.1398 30 1 1.6978 -1.7557 -1.2384 31 1 3.9143 0.3409 -1.3674 32 1 3.9437 -1.2831 -2.0986 33 1 5.0123 -2.4689 -2.0044 34 1 7.1606 -3.7353 -0.6787 35 1 5.7429 -4.8088 -0.6017 36 1 4.4942 -3.9482 -3.2679 37 1 5.3391 -5.1384 -4.2871 38 1 4.6793 -5.6278 -2.7084 39 1 8.0869 -3.0475 -2.8954 40 1 7.3294 -3.6313 -4.3964 41 1 6.4841 -2.4414 -3.3772 42 1 7.6000 -6.1574 -5.7537 43 1 3.9142 0.3409 1.3673 44 1 3.9416 -1.2845 2.0984 45 1 1.9237 -2.6860 2.1248 46 1 0.4700 -2.1958 1.2231 47 1 1.9426 -2.6731 0.3445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335590464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:14 Heat of formation + Delta-G solvation = -44.538009 kcal Electronic energy + Delta-G solvation = -23849.844455 eV Core-core repulsion = 20646.079027 eV Total energy + Delta-G solvation = -3203.765428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.38088 -38.25062 -36.30410 -34.14544 -33.18627 -31.90808 -30.68488 -28.61970 -26.99758 -25.70463 -25.46897 -24.64442 -23.38337 -22.69198 -20.14844 -18.88535 -18.54692 -17.84117 -15.93468 -15.63277 -15.50214 -15.29415 -14.72008 -14.38958 -14.12068 -13.91014 -13.68976 -13.41752 -13.02685 -12.86433 -12.69266 -12.35696 -12.14457 -12.05737 -11.78977 -11.50554 -11.35786 -11.20212 -11.15337 -10.87477 -10.80865 -10.63717 -10.44474 -10.37632 -10.36090 -10.17267 -9.64516 -9.60561 -9.26510 -8.75895 -8.59752 -8.37984 -8.05390 -6.00295 -4.09863 3.02625 3.28618 3.37223 3.42497 3.66188 4.30605 4.43701 4.53418 4.63875 4.67177 4.95175 5.10700 5.21727 5.26622 5.27435 5.39239 5.47218 5.58029 5.67929 5.70595 5.77158 5.81382 5.83873 5.86214 6.06338 6.12095 6.13545 6.25397 6.38831 6.40373 6.53310 6.70798 6.83925 6.84499 6.95824 7.05803 7.14972 7.32626 7.43290 7.58095 7.72024 8.03292 8.14807 8.40603 8.48690 8.90325 9.09642 9.55813 11.01221 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031668 B = 0.003845 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.948674 B = 7281.075284 C = 7562.245371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.069 0.931 4 C -0.133 4.133 5 C 0.112 3.888 6 N -0.632 5.632 7 C 0.702 3.298 8 O -0.599 6.599 9 N -0.734 5.734 10 C 0.150 3.850 11 C 0.055 3.945 12 C -0.128 4.128 13 C -0.129 4.129 14 C -0.503 4.503 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.135 3.865 23 C -0.102 4.102 24 H 0.077 0.923 25 C -0.146 4.146 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.393 0.607 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.004 0.996 37 H 0.085 0.915 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.085 0.915 41 H 0.004 0.996 42 H 0.259 0.741 43 H 0.059 0.941 44 H 0.092 0.908 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.928 12.519 6.047 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.088 0.912 4 C -0.171 4.171 5 C -0.012 4.012 6 N -0.371 5.371 7 C 0.403 3.597 8 O -0.478 6.478 9 N -0.391 5.391 10 C 0.027 3.973 11 C 0.055 3.945 12 C -0.186 4.186 13 C -0.186 4.186 14 C -0.542 4.542 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 C 0.011 3.989 23 C -0.121 4.121 24 H 0.096 0.904 25 C -0.203 4.203 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.230 0.770 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.023 0.977 37 H 0.103 0.897 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.104 0.896 41 H 0.023 0.977 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.110 0.890 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.533 12.137 6.608 18.656 hybrid contribution 0.414 -0.576 -0.541 0.892 sum -12.119 11.562 6.067 17.814 Atomic orbital electron populations 1.21876 0.95202 1.02022 1.01398 1.21101 0.95559 0.99096 0.94660 0.91214 1.22039 0.95214 1.01936 0.97924 1.21578 0.94188 0.98985 0.86437 1.47201 1.45910 1.37371 1.06598 1.15974 0.79508 0.79340 0.84846 1.90862 1.59230 1.66566 1.31145 1.45679 1.53125 1.33837 1.06444 1.21569 0.91345 0.84201 1.00220 1.18370 0.93814 0.94313 0.88047 1.21805 0.95766 0.96904 1.04125 1.21811 0.97472 0.95213 1.04150 1.21034 1.28390 1.11980 0.92807 0.92359 1.24879 0.96045 0.97116 0.95507 1.69817 1.44857 1.40592 0.97250 0.86519 0.80510 0.82720 0.78155 1.19745 1.21091 1.21094 1.21416 0.92447 0.98281 0.86727 1.21545 0.95517 0.97061 0.97984 0.90433 1.21865 1.00362 0.95594 1.02517 0.92828 0.92829 0.92323 0.90935 0.90874 0.91695 0.90285 0.77006 0.92962 0.93128 0.97706 0.89659 0.95483 0.95446 0.89647 0.97712 0.93117 0.92321 0.88972 0.92805 0.92779 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.87 37.16 0.33 -0.77 16 2 C -0.09 -0.73 2.46 -90.58 -0.22 -0.95 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -1.25 5.02 -26.61 -0.13 -1.39 16 5 C 0.11 1.26 6.43 -3.71 -0.02 1.23 16 6 N -0.63 -8.96 2.41 -178.50 -0.43 -9.39 16 7 C 0.70 13.11 8.30 -86.92 -0.72 12.39 16 8 O -0.60 -13.41 15.79 5.28 0.08 -13.32 16 9 N -0.73 -13.79 4.87 -65.23 -0.32 -14.11 16 10 C 0.15 3.30 4.51 -4.04 -0.02 3.28 16 11 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 12 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 13 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 14 C -0.50 -13.32 8.01 -34.44 -0.28 -13.60 16 15 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 16 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 17 N -0.89 -23.66 9.35 55.43 0.52 -23.15 16 18 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.13 1.65 5.81 -3.71 -0.02 1.63 16 23 C -0.10 -0.99 2.72 -90.50 -0.25 -1.24 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 C -0.15 -1.61 8.38 37.16 0.31 -1.30 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.46 6.47 -51.93 -0.34 0.12 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.78 6.34 -51.92 -0.33 0.45 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.93 5.56 -51.93 -0.29 0.64 16 33 H 0.39 6.69 3.62 -40.82 -0.15 6.55 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 37 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 41 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 42 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 1.31 7.03 -51.93 -0.37 0.95 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.51 6.47 -51.93 -0.34 0.17 16 47 H 0.06 0.79 5.97 -51.93 -0.31 0.48 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -28.95 346.69 -8.60 -37.56 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -8.07 Total: 4.47 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -0.59 Total: -3.10 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.23 Total: -46.65 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.95 -8.60 -37.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335590464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.981 kcal (2) G-P(sol) polarization free energy of solvation -28.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds