Wall clock time and date at job start Tue Mar 31 2020 06:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.44935 * 2 1 4 4 C 1.53041 * 109.46056 * 240.03445 * 2 1 3 5 5 C 1.53185 * 109.31507 * 178.61482 * 4 2 1 6 6 N 1.46926 * 108.77644 * 54.63483 * 5 4 2 7 7 C 1.34772 * 120.63321 * 126.37182 * 6 5 4 8 8 O 1.21592 * 120.00338 * 174.98376 * 7 6 5 9 9 N 1.34781 * 120.00178 * 354.98166 * 7 6 5 10 10 C 1.46496 * 119.99965 * 185.07633 * 9 7 6 11 11 C 1.53002 * 109.46738 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47332 * 299.99716 * 11 10 9 13 13 C 1.53003 * 109.47333 * 59.99820 * 11 10 9 14 14 C 1.50701 * 109.47128 * 179.97438 * 11 10 9 15 15 H 1.08007 * 119.99988 * 359.97438 * 14 11 10 16 16 C 1.37880 * 120.00310 * 180.02562 * 14 11 10 17 17 N 1.31518 * 119.99674 * 359.97438 * 16 14 11 18 18 Si 1.86790 * 120.00201 * 180.02562 * 16 14 11 19 19 H 1.48507 * 109.47321 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47435 * 119.99934 * 18 16 14 21 21 H 1.48499 * 109.47393 * 239.99501 * 18 16 14 22 22 C 1.46930 * 118.73898 * 306.39338 * 6 5 4 23 23 C 1.53043 * 109.46153 * 119.96908 * 2 1 3 24 24 H 1.09001 * 109.49113 * 301.33413 * 23 2 1 25 25 C 1.53001 * 109.52544 * 61.41414 * 23 2 1 26 26 H 1.08998 * 109.47146 * 300.03534 * 1 2 3 27 27 H 1.09000 * 109.47425 * 60.03691 * 1 2 3 28 28 H 1.09005 * 109.47292 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.50088 * 58.65988 * 4 2 1 30 30 H 1.09011 * 109.49938 * 298.56647 * 4 2 1 31 31 H 1.09004 * 109.58923 * 294.84837 * 5 4 2 32 32 H 1.09006 * 109.70932 * 174.49096 * 5 4 2 33 33 H 0.96994 * 119.99335 * 5.07381 * 9 7 6 34 34 H 1.09001 * 109.47054 * 299.99559 * 10 9 7 35 35 H 1.08994 * 109.47665 * 59.99924 * 10 9 7 36 36 H 1.09000 * 109.47046 * 60.00335 * 12 11 10 37 37 H 1.09000 * 109.47122 * 180.02562 * 12 11 10 38 38 H 1.08994 * 109.46917 * 299.99980 * 12 11 10 39 39 H 1.09001 * 109.47263 * 59.99947 * 13 11 10 40 40 H 1.09000 * 109.47364 * 179.97438 * 13 11 10 41 41 H 1.09000 * 109.47242 * 299.99786 * 13 11 10 42 42 H 0.96994 * 119.99805 * 180.02562 * 17 16 14 43 43 H 1.09003 * 109.58449 * 293.82456 * 22 6 5 44 44 H 1.08991 * 109.58919 * 173.39566 * 22 6 5 45 45 H 1.09000 * 109.46783 * 179.97438 * 25 23 2 46 46 H 1.09002 * 109.46962 * 299.92578 * 25 23 2 47 47 H 1.09001 * 109.46875 * 59.92528 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2489 -0.0001 7 6 4.9614 -2.2578 0.0000 8 8 5.4336 -2.6518 1.0489 9 7 5.3316 -2.8302 -1.1628 10 6 6.2161 -3.9979 -1.1553 11 6 6.4782 -4.4483 -2.5939 12 6 5.1523 -4.8171 -3.2624 13 6 7.1423 -3.3103 -3.3717 14 6 7.3886 -5.6492 -2.5864 15 1 7.7451 -6.0507 -1.6492 16 6 7.7674 -6.2346 -3.7758 17 7 7.3338 -5.7453 -4.9170 18 14 8.8953 -7.7235 -3.7664 19 1 9.2387 -8.0757 -2.3652 20 1 8.2065 -8.8705 -4.4109 21 1 10.1380 -7.4080 -4.5158 22 6 3.5714 -0.6886 1.2642 23 6 2.0399 -0.7208 1.2501 24 1 1.6572 -0.2207 2.1398 25 6 1.5597 -2.1734 1.2344 26 1 -0.3633 0.5144 0.8896 27 1 -0.3634 0.5132 -0.8903 28 1 -0.3634 -1.0277 0.0005 29 1 1.6572 -0.2208 -2.1398 30 1 1.6978 -1.7557 -1.2384 31 1 3.9143 0.3409 -1.3674 32 1 3.9437 -1.2831 -2.0986 33 1 5.0123 -2.4689 -2.0044 34 1 7.1606 -3.7353 -0.6787 35 1 5.7429 -4.8088 -0.6017 36 1 4.4942 -3.9482 -3.2679 37 1 5.3391 -5.1384 -4.2871 38 1 4.6793 -5.6278 -2.7084 39 1 8.0869 -3.0475 -2.8954 40 1 7.3294 -3.6313 -4.3964 41 1 6.4841 -2.4414 -3.3772 42 1 7.6000 -6.1574 -5.7537 43 1 3.9142 0.3409 1.3673 44 1 3.9416 -1.2845 2.0984 45 1 1.9237 -2.6860 2.1248 46 1 0.4700 -2.1958 1.2231 47 1 1.9426 -2.6731 0.3445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335590464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:14 Heat of formation + Delta-G solvation = -59.749690 kcal Electronic energy + Delta-G solvation = -23850.504083 eV Core-core repulsion = 20646.079027 eV Total energy + Delta-G solvation = -3204.425056 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.60326 -39.46512 -38.05354 -35.41626 -34.74663 -32.96608 -32.38361 -29.44294 -28.14276 -27.57610 -27.35784 -26.26807 -24.33838 -23.57864 -21.45137 -20.62302 -19.77082 -18.96210 -17.81940 -17.09722 -16.73243 -16.65622 -16.09607 -15.52695 -15.28151 -15.12791 -14.96867 -14.66072 -14.47100 -14.35095 -14.04120 -13.76150 -13.24446 -13.16802 -13.08376 -12.82211 -12.71155 -12.62205 -12.57246 -12.33911 -12.25590 -12.13498 -11.96312 -11.65488 -11.49592 -11.36786 -11.23270 -11.14873 -10.94494 -10.70559 -10.40186 -10.07912 -9.36491 -8.02313 -6.17766 1.41649 1.45640 1.55213 1.75201 2.19759 2.46276 3.06174 3.21283 3.77529 3.79912 3.89278 4.10610 4.24791 4.39422 4.43286 4.50098 4.52387 4.64323 4.68881 4.72400 4.78897 4.87130 4.90160 4.95313 4.98618 5.04081 5.05964 5.10074 5.10615 5.15562 5.18778 5.24998 5.34192 5.38552 5.45139 5.60356 5.62716 5.66298 5.67348 5.70882 6.01707 6.14073 6.21059 6.43728 6.86035 7.05544 7.49855 7.62757 8.97015 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031668 B = 0.003845 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.948674 B = 7281.075284 C = 7562.245371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 H 0.085 0.915 4 C -0.129 4.129 5 C 0.105 3.895 6 N -0.623 5.623 7 C 0.697 3.303 8 O -0.643 6.643 9 N -0.728 5.728 10 C 0.168 3.832 11 C 0.052 3.948 12 C -0.116 4.116 13 C -0.117 4.117 14 C -0.528 4.528 15 H 0.043 0.957 16 C 0.029 3.971 17 N -0.898 5.898 18 Si 0.946 3.054 19 H -0.276 1.276 20 H -0.280 1.280 21 H -0.281 1.281 22 C 0.129 3.871 23 C -0.095 4.095 24 H 0.099 0.901 25 C -0.144 4.144 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.403 0.597 34 H 0.032 0.968 35 H 0.032 0.968 36 H 0.033 0.967 37 H 0.064 0.936 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.260 0.740 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.037 0.963 46 H 0.071 0.929 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.505 14.436 5.604 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 H 0.103 0.897 4 C -0.167 4.167 5 C -0.017 4.017 6 N -0.360 5.360 7 C 0.398 3.602 8 O -0.525 6.525 9 N -0.386 5.386 10 C 0.043 3.957 11 C 0.051 3.949 12 C -0.174 4.174 13 C -0.175 4.175 14 C -0.567 4.567 15 H 0.061 0.939 16 C -0.170 4.170 17 N -0.537 5.537 18 Si 0.773 3.227 19 H -0.201 1.201 20 H -0.206 1.206 21 H -0.207 1.207 22 C 0.006 3.994 23 C -0.114 4.114 24 H 0.117 0.883 25 C -0.201 4.201 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.242 0.758 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.056 0.944 46 H 0.090 0.910 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.154 14.100 6.140 20.901 hybrid contribution 0.869 -1.129 -0.378 1.474 sum -13.285 12.970 5.762 19.440 Atomic orbital electron populations 1.21841 0.94043 1.01879 1.02406 1.21096 0.96426 0.99346 0.93082 0.89701 1.22028 0.93572 1.01561 0.99545 1.21863 0.95610 0.99751 0.84515 1.47265 1.44294 1.35771 1.08685 1.16145 0.80033 0.80111 0.83892 1.90829 1.61005 1.68177 1.32520 1.45392 1.52864 1.33111 1.07227 1.21109 0.90884 0.84836 0.98856 1.18365 0.93850 0.93794 0.88893 1.21629 0.95732 0.97744 1.02309 1.21641 0.97602 0.95909 1.02365 1.21285 1.29514 1.13457 0.92443 0.93852 1.25440 0.97142 0.99176 0.95292 1.69908 1.45170 1.41204 0.97427 0.85696 0.79074 0.80176 0.77787 1.20127 1.20616 1.20654 1.21617 0.94266 0.98566 0.84902 1.21534 0.93420 0.96493 0.99927 0.88304 1.21838 1.01404 0.96292 1.00561 0.91869 0.91848 0.93037 0.88677 0.92411 0.89396 0.90900 0.75803 0.94908 0.94943 0.94800 0.91741 0.96424 0.96423 0.91710 0.94798 0.92991 0.90168 0.91668 0.94406 0.91016 0.94396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.87 71.98 0.64 -0.98 16 2 C -0.08 -1.10 2.46 -10.77 -0.03 -1.12 16 3 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.13 -2.04 5.02 30.67 0.15 -1.89 16 5 C 0.11 2.09 6.43 86.36 0.56 2.64 16 6 N -0.62 -16.95 2.41 -836.91 -2.02 -18.97 16 7 C 0.70 26.14 8.30 179.05 1.49 27.63 16 8 O -0.64 -29.64 15.79 -4.01 -0.06 -29.71 16 9 N -0.73 -27.25 4.87 -478.54 -2.33 -29.58 16 10 C 0.17 7.56 4.51 86.38 0.39 7.95 16 11 C 0.05 2.45 0.50 -52.93 -0.03 2.43 16 12 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 13 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 14 C -0.53 -28.50 8.01 25.60 0.21 -28.29 16 15 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 16 C 0.03 1.56 5.15 84.65 0.44 1.99 16 17 N -0.90 -48.00 9.35 21.45 0.20 -47.80 16 18 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 C 0.13 2.98 5.81 86.36 0.50 3.48 16 23 C -0.09 -1.63 2.72 -10.72 -0.03 -1.65 16 24 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 25 C -0.14 -3.03 8.38 71.98 0.60 -2.43 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.66 6.47 -2.38 -0.02 0.64 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.12 6.34 -2.38 -0.02 1.11 16 31 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.07 1.54 5.56 -2.38 -0.01 1.53 16 33 H 0.40 13.20 3.62 -92.71 -0.34 12.87 16 34 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.03 1.28 6.86 -2.39 -0.02 1.27 16 37 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 41 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 42 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 43 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.06 1.88 7.03 -2.39 -0.02 1.86 16 45 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.07 1.23 6.47 -2.39 -0.02 1.22 16 47 H 0.04 0.97 5.97 -2.39 -0.01 0.95 16 Total: -1.00 -63.63 346.69 4.47 -59.16 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.61 Total: 21.52 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 6.05 Total: 0.34 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -4.15 Total: -96.35 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.06 Total: -29.71 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -63.63 4.47 -59.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335590464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.586 kcal (2) G-P(sol) polarization free energy of solvation -63.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds