Wall clock time and date at job start Tue Mar 31 2020 06:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.45311 * 2 1 4 4 C 1.53041 * 109.45914 * 119.96502 * 2 1 3 5 5 C 1.52759 * 109.38474 * 181.26322 * 4 2 1 6 6 N 1.46926 * 109.00418 * 305.58493 * 5 4 2 7 7 C 1.34778 * 120.63353 * 233.58417 * 6 5 4 8 8 O 1.21581 * 120.00919 * 185.28995 * 7 6 5 9 9 N 1.34780 * 119.99467 * 5.29220 * 7 6 5 10 10 C 1.46507 * 120.00086 * 185.39559 * 9 7 6 11 11 C 1.52997 * 109.47250 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46878 * 60.00520 * 11 10 9 13 13 C 1.52994 * 109.47288 * 300.00330 * 11 10 9 14 14 C 1.50703 * 109.46734 * 180.02562 * 11 10 9 15 15 H 1.07995 * 120.00416 * 3.90866 * 14 11 10 16 16 C 1.37879 * 119.99655 * 183.90801 * 14 11 10 17 17 N 1.31514 * 120.00093 * 353.20253 * 16 14 11 18 18 Si 1.86801 * 119.99923 * 173.19674 * 16 14 11 19 19 H 1.48500 * 109.46875 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47182 * 240.00122 * 18 16 14 21 21 H 1.48504 * 109.46601 * 120.00370 * 18 16 14 22 22 C 1.46922 * 118.74205 * 53.31161 * 6 5 4 23 23 C 1.53039 * 109.46099 * 240.02806 * 2 1 3 24 24 H 1.09008 * 109.49588 * 58.66813 * 23 2 1 25 25 C 1.52993 * 109.52743 * 298.58639 * 23 2 1 26 26 H 1.08993 * 109.47174 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46802 * 299.97124 * 1 2 3 28 28 H 1.09001 * 109.46781 * 59.96504 * 1 2 3 29 29 H 1.08999 * 109.49472 * 301.33743 * 4 2 1 30 30 H 1.08998 * 109.49639 * 61.39752 * 4 2 1 31 31 H 1.08996 * 109.51122 * 185.70953 * 5 4 2 32 32 H 1.09001 * 109.43644 * 65.41552 * 5 4 2 33 33 H 0.97004 * 120.00087 * 5.39743 * 9 7 6 34 34 H 1.09005 * 109.46300 * 60.00099 * 10 9 7 35 35 H 1.09002 * 109.46899 * 300.00568 * 10 9 7 36 36 H 1.09002 * 109.47136 * 173.91987 * 12 11 10 37 37 H 1.08998 * 109.46947 * 293.91324 * 12 11 10 38 38 H 1.08999 * 109.47646 * 53.91604 * 12 11 10 39 39 H 1.09006 * 109.46994 * 306.09703 * 13 11 10 40 40 H 1.09001 * 109.47168 * 66.09528 * 13 11 10 41 41 H 1.09005 * 109.47251 * 186.09958 * 13 11 10 42 42 H 0.97007 * 120.00271 * 4.83370 * 17 16 14 43 43 H 1.09004 * 109.58731 * 66.42475 * 22 6 5 44 44 H 1.08993 * 109.59263 * 186.71252 * 22 6 5 45 45 H 1.09006 * 109.46973 * 300.14343 * 25 23 2 46 46 H 1.09002 * 109.47094 * 60.14092 * 25 23 2 47 47 H 1.08998 * 109.47272 * 180.14150 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5671 -0.6923 1.2644 6 7 4.0678 -1.2489 0.0001 7 6 4.9614 -2.2579 0.0001 8 8 5.4408 -2.6455 -1.0478 9 7 5.3234 -2.8373 1.1619 10 6 6.3802 -3.8519 1.1764 11 6 6.5952 -4.3439 2.6091 12 6 5.2959 -4.9533 3.1394 13 6 7.0060 -3.1671 3.4962 14 6 7.6827 -5.3871 2.6239 15 1 8.2149 -5.6255 1.7149 16 6 7.9982 -6.0373 3.7981 17 7 7.4468 -5.6561 4.9296 18 14 9.2087 -7.4600 3.7818 19 1 9.6838 -7.6897 2.3938 20 1 8.5387 -8.6858 4.2855 21 1 10.3662 -7.1348 4.6535 22 6 3.5714 -0.6887 -1.2642 23 6 2.0399 -0.7209 -1.2500 24 1 1.6573 -0.2208 -2.1398 25 6 1.5597 -2.1734 -1.2343 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5134 0.8903 28 1 -0.3633 0.5144 -0.8897 29 1 1.6572 -0.2207 2.1398 30 1 1.6972 -1.7554 1.2387 31 1 3.9346 -1.2907 2.0979 32 1 3.9097 0.3369 1.3715 33 1 4.8843 -2.5825 1.9885 34 1 7.3060 -3.4175 0.7989 35 1 6.0877 -4.6901 0.5439 36 1 5.4767 -5.4001 4.1170 37 1 4.5397 -4.1737 3.2305 38 1 4.9457 -5.7202 2.4485 39 1 7.8694 -2.6660 3.0584 40 1 6.1773 -2.4630 3.5725 41 1 7.2639 -3.5337 4.4898 42 1 6.7662 -4.9648 4.9288 43 1 3.9143 0.3408 -1.3673 44 1 3.9437 -1.2831 -2.0984 45 1 1.9417 -2.6727 -0.3437 46 1 0.4700 -2.1958 -1.2242 47 1 1.9254 -2.6866 -2.1236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335590465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:17 Heat of formation + Delta-G solvation = -38.206632 kcal Electronic energy + Delta-G solvation = -23897.308565 eV Core-core repulsion = 20693.817686 eV Total energy + Delta-G solvation = -3203.490879 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.46587 -38.36747 -36.72727 -34.23009 -33.46024 -31.98245 -30.42256 -28.68443 -27.06661 -26.04607 -25.76162 -24.30243 -23.39786 -22.72432 -20.22711 -18.97512 -18.73162 -18.03604 -16.55736 -15.89377 -15.59176 -15.34845 -14.47207 -14.20834 -14.18903 -13.91613 -13.73925 -13.59734 -13.17600 -12.85081 -12.66137 -12.62075 -12.33541 -12.14468 -11.84297 -11.56716 -11.52483 -11.24682 -11.21930 -10.94361 -10.84655 -10.62172 -10.60658 -10.49115 -10.43001 -10.11668 -9.87633 -9.71619 -9.48135 -8.67689 -8.51622 -8.23793 -8.15023 -6.25565 -4.09650 2.95092 3.45016 3.46999 3.57641 3.62004 4.23410 4.47368 4.51681 4.58355 4.61275 4.89247 5.04915 5.15955 5.21471 5.33303 5.34204 5.41860 5.52761 5.62096 5.64569 5.71839 5.76131 5.78206 5.81057 5.98660 6.01565 6.08108 6.09032 6.21879 6.26680 6.32389 6.56311 6.58160 6.67527 6.74321 6.82259 6.96749 7.07596 7.13329 7.28194 7.51000 7.67395 8.20752 8.36824 8.42612 8.85125 9.00400 9.60821 11.00537 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032399 B = 0.003838 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.006808 B = 7293.037090 C = 7592.937888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.070 0.930 4 C -0.134 4.134 5 C 0.112 3.888 6 N -0.631 5.631 7 C 0.703 3.297 8 O -0.597 6.597 9 N -0.737 5.737 10 C 0.158 3.842 11 C 0.041 3.959 12 C -0.143 4.143 13 C -0.142 4.142 14 C -0.585 4.585 15 H 0.053 0.947 16 C 0.026 3.974 17 N -0.919 5.919 18 Si 1.070 2.930 19 H -0.289 1.289 20 H -0.288 1.288 21 H -0.288 1.288 22 C 0.134 3.866 23 C -0.102 4.102 24 H 0.078 0.922 25 C -0.146 4.146 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.392 0.608 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.014 0.986 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.012 0.988 41 H 0.070 0.930 42 H 0.281 0.719 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.596 12.249 -6.973 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.088 0.912 4 C -0.172 4.172 5 C -0.011 4.011 6 N -0.370 5.370 7 C 0.404 3.596 8 O -0.476 6.476 9 N -0.393 5.393 10 C 0.034 3.966 11 C 0.040 3.960 12 C -0.201 4.201 13 C -0.200 4.200 14 C -0.623 4.623 15 H 0.071 0.929 16 C -0.178 4.178 17 N -0.559 5.559 18 Si 0.899 3.101 19 H -0.215 1.215 20 H -0.214 1.214 21 H -0.215 1.215 22 C 0.011 3.989 23 C -0.121 4.121 24 H 0.097 0.903 25 C -0.203 4.203 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.229 0.771 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.033 0.967 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.031 0.969 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.393 10.872 -6.749 17.814 hybrid contribution -1.071 1.277 -0.524 1.747 sum -13.464 12.148 -7.272 19.539 Atomic orbital electron populations 1.21876 0.95147 1.02026 1.01451 1.21100 0.95607 0.99120 0.94581 0.91160 1.21982 0.95260 1.01931 0.98064 1.21488 0.94144 0.99141 0.86364 1.47208 1.46185 1.36980 1.06645 1.15957 0.79474 0.79423 0.84739 1.90866 1.58984 1.66740 1.31004 1.45675 1.42033 1.43765 1.07854 1.21451 0.87424 0.88313 0.99363 1.18537 0.94462 0.93780 0.89232 1.22018 0.96413 0.98787 1.02895 1.22063 0.98068 0.97144 1.02749 1.21807 1.20229 1.22136 0.98147 0.92859 1.25666 1.00006 1.00187 0.91932 1.70826 1.26554 1.31328 1.27235 0.83532 0.75715 0.75658 0.75207 1.21494 1.21399 1.21467 1.21428 0.92443 0.98379 0.86657 1.21550 0.95496 0.97055 0.98044 0.90348 1.21864 1.00418 0.95595 1.02462 0.92329 0.92804 0.92778 0.90855 0.90954 0.90424 0.91593 0.77147 0.92955 0.92703 0.90987 0.96722 0.94395 0.94466 0.96854 0.91088 0.90287 0.92220 0.88950 0.92210 0.92713 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.87 37.16 0.33 -0.74 16 2 C -0.09 -0.71 2.46 -90.58 -0.22 -0.93 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -1.22 5.00 -26.83 -0.13 -1.36 16 5 C 0.11 1.24 6.40 -3.93 -0.03 1.21 16 6 N -0.63 -8.82 2.42 -178.77 -0.43 -9.25 16 7 C 0.70 12.98 8.29 -86.91 -0.72 12.26 16 8 O -0.60 -13.28 15.79 5.29 0.08 -13.20 16 9 N -0.74 -13.64 4.92 -65.22 -0.32 -13.96 16 10 C 0.16 3.46 4.51 -4.04 -0.02 3.45 16 11 C 0.04 0.95 0.50 -155.66 -0.08 0.88 16 12 C -0.14 -3.21 7.87 37.16 0.29 -2.91 16 13 C -0.14 -3.17 7.92 37.15 0.29 -2.88 16 14 C -0.58 -15.73 8.01 -34.44 -0.28 -16.00 16 15 H 0.05 1.47 7.75 -52.49 -0.41 1.06 16 16 C 0.03 0.71 5.09 -17.82 -0.09 0.61 16 17 N -0.92 -25.91 12.19 55.43 0.68 -25.23 16 18 Si 1.07 24.71 29.91 -169.99 -5.08 19.63 16 19 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.13 1.62 5.81 -3.71 -0.02 1.59 16 23 C -0.10 -0.97 2.72 -90.50 -0.25 -1.22 16 24 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 25 C -0.15 -1.57 8.38 37.15 0.31 -1.26 16 26 H 0.06 0.45 6.47 -51.93 -0.34 0.11 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.74 6.34 -51.93 -0.33 0.42 16 31 H 0.08 0.89 5.58 -51.93 -0.29 0.60 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.39 6.52 3.76 -40.82 -0.15 6.36 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.77 5.18 -51.93 -0.27 1.50 16 37 H 0.01 0.27 7.04 -51.93 -0.37 -0.09 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.01 0.24 7.04 -51.93 -0.37 -0.12 16 41 H 0.07 1.74 5.27 -51.93 -0.27 1.47 16 42 H 0.28 7.64 3.53 -40.82 -0.14 7.50 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 1.30 7.04 -51.93 -0.37 0.93 16 45 H 0.06 0.75 5.97 -51.93 -0.31 0.44 16 46 H 0.05 0.50 6.48 -51.93 -0.34 0.16 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -30.35 343.55 -8.32 -38.67 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -7.81 Total: 5.45 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.61 Total: -7.29 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.08 Total: -48.44 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.08 Total: 19.63 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.35 -8.32 -38.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335590465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.467 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds