Wall clock time and date at job start Tue Mar 31 2020 06:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.45311 * 2 1 4 4 C 1.53041 * 109.45914 * 119.96502 * 2 1 3 5 5 C 1.52759 * 109.38474 * 181.26322 * 4 2 1 6 6 N 1.46926 * 109.00418 * 305.58493 * 5 4 2 7 7 C 1.34778 * 120.63353 * 233.58417 * 6 5 4 8 8 O 1.21581 * 120.00919 * 185.28995 * 7 6 5 9 9 N 1.34780 * 119.99467 * 5.29220 * 7 6 5 10 10 C 1.46507 * 120.00086 * 185.39559 * 9 7 6 11 11 C 1.52997 * 109.47250 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46878 * 60.00520 * 11 10 9 13 13 C 1.52994 * 109.47288 * 300.00330 * 11 10 9 14 14 C 1.50703 * 109.46734 * 180.02562 * 11 10 9 15 15 H 1.07995 * 120.00416 * 3.90866 * 14 11 10 16 16 C 1.37879 * 119.99655 * 183.90801 * 14 11 10 17 17 N 1.31514 * 120.00093 * 353.20253 * 16 14 11 18 18 Si 1.86801 * 119.99923 * 173.19674 * 16 14 11 19 19 H 1.48500 * 109.46875 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47182 * 240.00122 * 18 16 14 21 21 H 1.48504 * 109.46601 * 120.00370 * 18 16 14 22 22 C 1.46922 * 118.74205 * 53.31161 * 6 5 4 23 23 C 1.53039 * 109.46099 * 240.02806 * 2 1 3 24 24 H 1.09008 * 109.49588 * 58.66813 * 23 2 1 25 25 C 1.52993 * 109.52743 * 298.58639 * 23 2 1 26 26 H 1.08993 * 109.47174 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46802 * 299.97124 * 1 2 3 28 28 H 1.09001 * 109.46781 * 59.96504 * 1 2 3 29 29 H 1.08999 * 109.49472 * 301.33743 * 4 2 1 30 30 H 1.08998 * 109.49639 * 61.39752 * 4 2 1 31 31 H 1.08996 * 109.51122 * 185.70953 * 5 4 2 32 32 H 1.09001 * 109.43644 * 65.41552 * 5 4 2 33 33 H 0.97004 * 120.00087 * 5.39743 * 9 7 6 34 34 H 1.09005 * 109.46300 * 60.00099 * 10 9 7 35 35 H 1.09002 * 109.46899 * 300.00568 * 10 9 7 36 36 H 1.09002 * 109.47136 * 173.91987 * 12 11 10 37 37 H 1.08998 * 109.46947 * 293.91324 * 12 11 10 38 38 H 1.08999 * 109.47646 * 53.91604 * 12 11 10 39 39 H 1.09006 * 109.46994 * 306.09703 * 13 11 10 40 40 H 1.09001 * 109.47168 * 66.09528 * 13 11 10 41 41 H 1.09005 * 109.47251 * 186.09958 * 13 11 10 42 42 H 0.97007 * 120.00271 * 4.83370 * 17 16 14 43 43 H 1.09004 * 109.58731 * 66.42475 * 22 6 5 44 44 H 1.08993 * 109.59263 * 186.71252 * 22 6 5 45 45 H 1.09006 * 109.46973 * 300.14343 * 25 23 2 46 46 H 1.09002 * 109.47094 * 60.14092 * 25 23 2 47 47 H 1.08998 * 109.47272 * 180.14150 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5671 -0.6923 1.2644 6 7 4.0678 -1.2489 0.0001 7 6 4.9614 -2.2579 0.0001 8 8 5.4408 -2.6455 -1.0478 9 7 5.3234 -2.8373 1.1619 10 6 6.3802 -3.8519 1.1764 11 6 6.5952 -4.3439 2.6091 12 6 5.2959 -4.9533 3.1394 13 6 7.0060 -3.1671 3.4962 14 6 7.6827 -5.3871 2.6239 15 1 8.2149 -5.6255 1.7149 16 6 7.9982 -6.0373 3.7981 17 7 7.4468 -5.6561 4.9296 18 14 9.2087 -7.4600 3.7818 19 1 9.6838 -7.6897 2.3938 20 1 8.5387 -8.6858 4.2855 21 1 10.3662 -7.1348 4.6535 22 6 3.5714 -0.6887 -1.2642 23 6 2.0399 -0.7209 -1.2500 24 1 1.6573 -0.2208 -2.1398 25 6 1.5597 -2.1734 -1.2343 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5134 0.8903 28 1 -0.3633 0.5144 -0.8897 29 1 1.6572 -0.2207 2.1398 30 1 1.6972 -1.7554 1.2387 31 1 3.9346 -1.2907 2.0979 32 1 3.9097 0.3369 1.3715 33 1 4.8843 -2.5825 1.9885 34 1 7.3060 -3.4175 0.7989 35 1 6.0877 -4.6901 0.5439 36 1 5.4767 -5.4001 4.1170 37 1 4.5397 -4.1737 3.2305 38 1 4.9457 -5.7202 2.4485 39 1 7.8694 -2.6660 3.0584 40 1 6.1773 -2.4630 3.5725 41 1 7.2639 -3.5337 4.4898 42 1 6.7662 -4.9648 4.9288 43 1 3.9143 0.3408 -1.3673 44 1 3.9437 -1.2831 -2.0984 45 1 1.9417 -2.6727 -0.3437 46 1 0.4700 -2.1958 -1.2242 47 1 1.9254 -2.6866 -2.1236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335590465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:16 Heat of formation + Delta-G solvation = -54.725026 kcal Electronic energy + Delta-G solvation = -23898.024856 eV Core-core repulsion = 20693.817686 eV Total energy + Delta-G solvation = -3204.207170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68085 -39.60915 -38.45744 -35.56287 -34.92206 -32.94021 -32.20137 -29.49237 -28.27786 -27.88758 -27.49409 -25.99665 -24.35630 -23.61035 -21.55860 -20.73751 -20.05272 -19.09592 -18.42222 -17.27378 -16.83667 -16.24365 -15.73460 -15.62798 -15.53744 -15.26197 -15.02887 -14.61498 -14.51927 -14.45169 -14.35092 -13.80615 -13.38052 -13.21937 -13.20356 -12.85428 -12.77853 -12.66324 -12.54886 -12.43390 -12.36626 -11.99938 -11.93145 -11.74059 -11.68939 -11.42502 -11.38003 -11.18730 -11.03058 -10.51925 -10.28143 -10.16762 -9.43188 -8.38840 -6.24339 1.56401 1.63045 1.68206 1.80815 2.12093 2.59509 2.98059 3.24814 3.73302 3.75923 3.85701 4.06697 4.15274 4.21827 4.33269 4.38699 4.44656 4.46818 4.60629 4.65808 4.75346 4.79818 4.81669 4.83525 4.86570 4.87822 4.92275 4.96838 5.02776 5.07201 5.12109 5.15291 5.18657 5.21263 5.31033 5.41972 5.46184 5.57588 5.62656 5.65614 5.81684 5.94530 6.17314 6.31956 6.74562 6.98733 7.50714 7.55862 8.89055 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032399 B = 0.003838 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.006808 B = 7293.037090 C = 7592.937888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 H 0.084 0.916 4 C -0.130 4.130 5 C 0.105 3.895 6 N -0.622 5.622 7 C 0.697 3.303 8 O -0.642 6.642 9 N -0.729 5.729 10 C 0.176 3.824 11 C 0.036 3.964 12 C -0.132 4.132 13 C -0.131 4.131 14 C -0.604 4.604 15 H 0.036 0.964 16 C -0.013 4.013 17 N -0.937 5.937 18 Si 1.108 2.892 19 H -0.282 1.282 20 H -0.281 1.281 21 H -0.282 1.282 22 C 0.129 3.871 23 C -0.095 4.095 24 H 0.099 0.901 25 C -0.144 4.144 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.403 0.597 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.028 0.972 39 H 0.029 0.971 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.280 0.720 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.037 0.963 46 H 0.072 0.928 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.350 14.143 -6.590 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 H 0.103 0.897 4 C -0.168 4.168 5 C -0.017 4.017 6 N -0.359 5.359 7 C 0.399 3.601 8 O -0.524 6.524 9 N -0.387 5.387 10 C 0.052 3.948 11 C 0.035 3.965 12 C -0.190 4.190 13 C -0.189 4.189 14 C -0.643 4.643 15 H 0.054 0.946 16 C -0.213 4.213 17 N -0.578 5.578 18 Si 0.933 3.067 19 H -0.208 1.208 20 H -0.206 1.206 21 H -0.208 1.208 22 C 0.006 3.994 23 C -0.114 4.114 24 H 0.117 0.883 25 C -0.201 4.201 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.242 0.758 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.056 0.944 46 H 0.091 0.909 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.202 12.819 -6.347 20.157 hybrid contribution -0.575 0.751 -0.688 1.170 sum -14.777 13.570 -7.035 21.260 Atomic orbital electron populations 1.21841 0.93984 1.01912 1.02429 1.21096 0.96474 0.99340 0.93056 0.89743 1.21971 0.93549 1.01655 0.99631 1.21776 0.95622 0.99844 0.84462 1.47272 1.44611 1.35287 1.08735 1.16132 0.80037 0.80165 0.83788 1.90833 1.60818 1.68319 1.32427 1.45359 1.41448 1.43240 1.08652 1.20963 0.87635 0.88302 0.97936 1.18537 0.94124 0.93663 0.90207 1.21858 0.96642 0.99339 1.01168 1.21891 0.99047 0.97107 1.00854 1.22104 1.21227 1.23388 0.97539 0.94573 1.26743 1.01125 1.01803 0.91668 1.70883 1.27289 1.31988 1.27685 0.83018 0.74427 0.73650 0.75648 1.20767 1.20640 1.20750 1.21628 0.94308 0.98610 0.84854 1.21537 0.93347 0.96544 0.99971 0.88279 1.21840 1.01469 0.96236 1.00560 0.92980 0.91834 0.91874 0.88579 0.92308 0.90900 0.89465 0.75829 0.94819 0.94894 0.93042 0.93472 0.95290 0.95203 0.93437 0.93215 0.90433 0.90164 0.91655 0.94386 0.90940 0.94400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.87 71.98 0.64 -0.91 16 2 C -0.08 -1.05 2.46 -10.77 -0.03 -1.08 16 3 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.13 -1.96 5.00 30.53 0.15 -1.80 16 5 C 0.11 2.03 6.40 86.22 0.55 2.58 16 6 N -0.62 -16.59 2.42 -837.76 -2.03 -18.62 16 7 C 0.70 25.81 8.29 179.05 1.48 27.30 16 8 O -0.64 -29.39 15.79 -3.97 -0.06 -29.45 16 9 N -0.73 -26.77 4.92 -478.52 -2.36 -29.12 16 10 C 0.18 7.91 4.51 86.38 0.39 8.30 16 11 C 0.04 1.67 0.50 -52.93 -0.03 1.65 16 12 C -0.13 -5.87 7.87 71.98 0.57 -5.30 16 13 C -0.13 -5.76 7.92 71.98 0.57 -5.19 16 14 C -0.60 -33.13 8.01 25.60 0.20 -32.92 16 15 H 0.04 2.05 7.75 -2.91 -0.02 2.03 16 16 C -0.01 -0.74 5.09 84.66 0.43 -0.31 16 17 N -0.94 -53.03 12.19 21.45 0.26 -52.77 16 18 Si 1.11 50.01 29.91 68.60 2.05 52.06 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 C 0.13 2.92 5.81 86.36 0.50 3.42 16 23 C -0.09 -1.58 2.72 -10.72 -0.03 -1.61 16 24 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 25 C -0.14 -2.93 8.38 71.98 0.60 -2.33 16 26 H 0.05 0.63 6.47 -2.39 -0.02 0.62 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.08 6.34 -2.39 -0.02 1.06 16 31 H 0.07 1.47 5.58 -2.39 -0.01 1.46 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.40 12.76 3.76 -92.71 -0.35 12.41 16 34 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.05 2.52 5.18 -2.39 -0.01 2.50 16 37 H 0.05 1.74 7.04 -2.39 -0.02 1.72 16 38 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.05 1.72 7.04 -2.39 -0.02 1.70 16 41 H 0.05 2.42 5.27 -2.38 -0.01 2.41 16 42 H 0.28 15.31 3.53 -92.70 -0.33 14.98 16 43 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.06 1.86 7.04 -2.39 -0.02 1.84 16 45 H 0.04 0.93 5.97 -2.38 -0.01 0.92 16 46 H 0.07 1.20 6.48 -2.39 -0.02 1.18 16 47 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -67.16 343.55 4.92 -62.24 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 1.04 Total: 23.88 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 6.01 Total: -8.22 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -4.12 Total: -100.52 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.06 Total: -29.45 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 2.05 Total: 52.06 kcal Total: -67.16 4.92 -62.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335590465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.514 kcal (2) G-P(sol) polarization free energy of solvation -67.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds