Wall clock time and date at job start Tue Mar 31 2020 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.44819 * 2 1 4 4 C 1.53032 * 109.45992 * 240.03200 * 2 1 3 5 5 C 1.53624 * 109.24492 * 178.48930 * 4 2 1 6 6 N 1.46928 * 108.54040 * 54.85445 * 5 4 2 7 7 C 1.34776 * 120.62970 * 126.36902 * 6 5 4 8 8 O 1.21589 * 120.00002 * 185.31153 * 7 6 5 9 9 N 1.34774 * 120.00089 * 5.31793 * 7 6 5 10 10 C 1.46500 * 120.00362 * 185.32410 * 9 7 6 11 11 C 1.52992 * 109.47363 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47333 * 60.00149 * 11 10 9 13 13 C 1.52997 * 109.47569 * 300.00254 * 11 10 9 14 14 C 1.50707 * 109.47497 * 180.02562 * 11 10 9 15 15 H 1.08005 * 119.99180 * 3.75238 * 14 11 10 16 16 C 1.37868 * 120.00340 * 183.75440 * 14 11 10 17 17 N 1.31519 * 120.00134 * 353.42894 * 16 14 11 18 18 Si 1.86799 * 120.00081 * 173.42414 * 16 14 11 19 19 H 1.48500 * 109.47107 * 0.02562 * 18 16 14 20 20 H 1.48492 * 109.47428 * 239.99892 * 18 16 14 21 21 H 1.48503 * 109.47044 * 120.00136 * 18 16 14 22 22 C 1.46924 * 118.73828 * 306.09769 * 6 5 4 23 23 C 1.53042 * 109.46035 * 119.96085 * 2 1 3 24 24 H 1.09000 * 109.49746 * 61.43759 * 23 2 1 25 25 C 1.52991 * 109.52585 * 301.35272 * 23 2 1 26 26 H 1.09007 * 109.46989 * 300.03788 * 1 2 3 27 27 H 1.08995 * 109.47066 * 60.03428 * 1 2 3 28 28 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.49821 * 298.56584 * 4 2 1 30 30 H 1.09000 * 109.49760 * 58.62741 * 4 2 1 31 31 H 1.09001 * 109.73826 * 295.11948 * 5 4 2 32 32 H 1.08997 * 109.66792 * 174.55084 * 5 4 2 33 33 H 0.97006 * 120.00028 * 5.32817 * 9 7 6 34 34 H 1.09001 * 109.46974 * 60.00114 * 10 9 7 35 35 H 1.08998 * 109.47353 * 300.00107 * 10 9 7 36 36 H 1.08996 * 109.47484 * 174.30530 * 12 11 10 37 37 H 1.08997 * 109.46951 * 294.31144 * 12 11 10 38 38 H 1.09005 * 109.47196 * 54.30622 * 12 11 10 39 39 H 1.08997 * 109.46875 * 305.64530 * 13 11 10 40 40 H 1.09002 * 109.47164 * 65.64480 * 13 11 10 41 41 H 1.08992 * 109.47394 * 185.64569 * 13 11 10 42 42 H 0.96998 * 119.99924 * 4.71347 * 17 16 14 43 43 H 1.09002 * 109.58704 * 173.65114 * 22 6 5 44 44 H 1.09004 * 109.58697 * 293.92697 * 22 6 5 45 45 H 1.09004 * 109.47875 * 300.14555 * 25 23 2 46 46 H 1.09001 * 109.47292 * 60.14696 * 25 23 2 47 47 H 1.09002 * 109.47348 * 180.14446 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5756 -0.6848 -1.2642 6 7 4.0679 -1.2488 0.0000 7 6 4.9621 -2.2572 0.0001 8 8 5.2889 -2.7799 1.0481 9 7 5.4942 -2.6860 -1.1615 10 6 6.3756 -3.8562 -1.1757 11 6 6.8384 -4.1287 -2.6082 12 6 7.5983 -2.9115 -3.1391 13 6 5.6210 -4.3965 -3.4954 14 6 7.7446 -5.3328 -2.6230 15 1 7.9197 -5.8879 -1.7132 16 6 8.3500 -5.7257 -3.7977 17 7 8.0380 -5.1319 -4.9289 18 14 9.6135 -7.1014 -3.7826 19 1 9.7848 -7.6010 -2.3946 20 1 10.9117 -6.5869 -4.2877 21 1 9.1481 -8.2106 -4.6535 22 6 3.5714 -0.6885 1.2642 23 6 2.0399 -0.7206 1.2502 24 1 1.6979 -1.7555 1.2384 25 6 1.5029 -0.0194 2.4994 26 1 -0.3633 0.5145 0.8897 27 1 -0.3633 0.5133 -0.8903 28 1 -0.3633 -1.0277 0.0005 29 1 1.6978 -1.7557 -1.2382 30 1 1.6567 -0.2211 -2.1398 31 1 3.9189 0.3450 -1.3632 32 1 3.9487 -1.2783 -2.0989 33 1 5.2936 -2.2199 -1.9883 34 1 5.8341 -4.7235 -0.7980 35 1 7.2427 -3.6656 -0.5434 36 1 8.0146 -3.1422 -4.1196 37 1 6.9159 -2.0658 -3.2238 38 1 8.4059 -2.6592 -2.4518 39 1 5.0249 -5.1993 -3.0616 40 1 5.0165 -3.4922 -3.5654 41 1 5.9542 -4.6887 -4.4911 42 1 7.4339 -4.3729 -4.9277 43 1 3.9417 -1.2843 2.0985 44 1 3.9164 0.3403 1.3685 45 1 1.8442 1.0157 2.5102 46 1 0.4132 -0.0426 2.4889 47 1 1.8686 -0.5318 3.3892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335590467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:22 Heat of formation + Delta-G solvation = -42.323795 kcal Electronic energy + Delta-G solvation = -23603.398711 eV Core-core repulsion = 20399.729299 eV Total energy + Delta-G solvation = -3203.669413 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.32745 -38.29717 -36.73028 -34.38895 -33.46321 -32.30862 -30.46622 -28.53761 -27.02055 -26.04639 -25.73078 -24.32862 -23.16911 -22.37850 -20.30102 -19.49717 -18.92430 -18.06385 -16.53796 -16.04055 -15.39957 -14.99410 -14.63761 -14.34607 -14.26266 -13.78824 -13.74592 -13.54114 -13.14737 -12.83140 -12.72664 -12.54611 -12.21865 -12.11512 -12.00642 -11.88022 -11.54011 -11.27157 -11.20636 -10.98282 -10.87819 -10.65370 -10.60878 -10.58645 -10.38612 -10.11650 -9.87728 -9.72966 -9.48515 -8.68686 -8.51368 -8.24502 -8.16435 -6.25601 -4.09759 2.93227 3.45027 3.47039 3.56106 3.62019 4.24736 4.48819 4.51279 4.54488 4.60386 4.80397 5.08414 5.20774 5.23845 5.29192 5.33291 5.34585 5.42578 5.52801 5.61488 5.67871 5.71269 5.77225 5.82647 5.93696 5.95900 6.03578 6.08853 6.21602 6.26651 6.27209 6.55767 6.56910 6.67054 6.73593 6.82222 6.96335 7.07591 7.13047 7.27357 7.50818 7.67294 8.20543 8.35757 8.42405 8.85124 8.99155 9.60804 11.00549 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035347 B = 0.003603 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.962730 B = 7769.508404 C = 8177.933628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.070 0.930 4 C -0.129 4.129 5 C 0.111 3.889 6 N -0.635 5.635 7 C 0.702 3.298 8 O -0.597 6.597 9 N -0.736 5.736 10 C 0.157 3.843 11 C 0.041 3.959 12 C -0.144 4.144 13 C -0.142 4.142 14 C -0.585 4.585 15 H 0.053 0.947 16 C 0.026 3.974 17 N -0.919 5.919 18 Si 1.070 2.930 19 H -0.289 1.289 20 H -0.288 1.288 21 H -0.288 1.288 22 C 0.135 3.865 23 C -0.102 4.102 24 H 0.074 0.926 25 C -0.146 4.146 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.392 0.608 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.014 0.986 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.012 0.988 41 H 0.070 0.930 42 H 0.281 0.719 43 H 0.092 0.908 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.898 12.713 7.378 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.089 0.911 4 C -0.168 4.168 5 C -0.013 4.013 6 N -0.373 5.373 7 C 0.403 3.597 8 O -0.476 6.476 9 N -0.392 5.392 10 C 0.034 3.966 11 C 0.040 3.960 12 C -0.202 4.202 13 C -0.200 4.200 14 C -0.623 4.623 15 H 0.071 0.929 16 C -0.178 4.178 17 N -0.560 5.560 18 Si 0.899 3.101 19 H -0.215 1.215 20 H -0.214 1.214 21 H -0.215 1.215 22 C 0.012 3.988 23 C -0.122 4.122 24 H 0.092 0.908 25 C -0.204 4.204 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.229 0.771 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.033 0.967 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.031 0.969 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.663 11.359 7.150 18.453 hybrid contribution -1.125 1.189 0.505 1.713 sum -13.788 12.548 7.655 20.153 Atomic orbital electron populations 1.21886 0.95148 1.01883 1.01617 1.21137 0.95621 0.99343 0.94344 0.91118 1.22056 0.95046 1.01609 0.98063 1.21686 0.94294 0.98929 0.86372 1.47254 1.45719 1.37590 1.06764 1.15976 0.79258 0.79658 0.84765 1.90866 1.65808 1.59965 1.30996 1.45661 1.51759 1.34022 1.07786 1.21452 0.91298 0.84429 0.99397 1.18540 0.93225 0.95034 0.89216 1.22023 0.99064 0.96150 1.02923 1.22060 0.97495 0.97702 1.02762 1.21808 1.29640 1.12797 0.98074 0.92852 1.25669 0.98597 1.01603 0.91935 1.70827 1.35557 1.22320 1.27268 0.83527 0.75936 0.75419 0.75206 1.21492 1.21400 1.21465 1.21441 0.92559 0.98271 0.86557 1.21551 0.95383 1.00400 0.94836 0.90753 1.21817 1.01092 1.00399 0.97074 0.92332 0.92796 0.92726 0.91327 0.90791 0.91609 0.90290 0.77136 0.92943 0.92663 0.90982 0.96693 0.94360 0.94463 0.96855 0.91086 0.90277 0.88953 0.92258 0.92603 0.92125 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.81 37.16 0.33 -0.76 16 2 C -0.09 -0.73 2.23 -90.58 -0.20 -0.93 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -1.21 5.38 -26.39 -0.14 -1.36 16 5 C 0.11 1.24 6.37 -3.48 -0.02 1.21 16 6 N -0.63 -9.06 2.97 -178.23 -0.53 -9.59 16 7 C 0.70 13.16 8.29 -86.92 -0.72 12.44 16 8 O -0.60 -13.43 15.77 5.29 0.08 -13.35 16 9 N -0.74 -13.74 4.89 -65.23 -0.32 -14.06 16 10 C 0.16 3.47 4.51 -4.05 -0.02 3.45 16 11 C 0.04 0.96 0.50 -155.66 -0.08 0.88 16 12 C -0.14 -3.23 7.88 37.16 0.29 -2.94 16 13 C -0.14 -3.17 7.93 37.16 0.29 -2.88 16 14 C -0.58 -15.76 8.01 -34.44 -0.28 -16.03 16 15 H 0.05 1.47 7.75 -52.48 -0.41 1.06 16 16 C 0.03 0.70 5.09 -17.82 -0.09 0.61 16 17 N -0.92 -25.96 12.20 55.43 0.68 -25.29 16 18 Si 1.07 24.74 29.91 -169.99 -5.08 19.66 16 19 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 22 C 0.14 1.65 5.72 -3.71 -0.02 1.63 16 23 C -0.10 -1.00 2.41 -90.51 -0.22 -1.22 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 C -0.15 -1.14 8.81 37.15 0.33 -0.81 16 26 H 0.06 0.39 6.41 -51.93 -0.33 0.05 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.91 5.75 -51.93 -0.30 0.62 16 33 H 0.39 6.56 3.85 -40.82 -0.16 6.40 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.77 5.19 -51.93 -0.27 1.50 16 37 H 0.01 0.28 7.03 -51.93 -0.37 -0.09 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.01 0.24 7.03 -51.93 -0.37 -0.12 16 41 H 0.07 1.74 5.27 -51.93 -0.27 1.47 16 42 H 0.28 7.66 3.51 -40.82 -0.14 7.51 16 43 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.42 6.42 -51.93 -0.33 0.09 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 348.17 15.07 5.25 5.25 Total: -1.00 -30.57 348.17 -8.50 -39.06 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -8.02 Total: 5.01 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.55 Total: -6.69 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.17 Total: -48.94 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.57 -8.50 -39.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335590467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.262 kcal (2) G-P(sol) polarization free energy of solvation -30.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds