Wall clock time and date at job start Tue Mar 31 2020 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.44819 * 2 1 4 4 C 1.53032 * 109.45992 * 240.03200 * 2 1 3 5 5 C 1.53624 * 109.24492 * 178.48930 * 4 2 1 6 6 N 1.46928 * 108.54040 * 54.85445 * 5 4 2 7 7 C 1.34776 * 120.62970 * 126.36902 * 6 5 4 8 8 O 1.21589 * 120.00002 * 185.31153 * 7 6 5 9 9 N 1.34774 * 120.00089 * 5.31793 * 7 6 5 10 10 C 1.46500 * 120.00362 * 185.32410 * 9 7 6 11 11 C 1.52992 * 109.47363 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47333 * 60.00149 * 11 10 9 13 13 C 1.52997 * 109.47569 * 300.00254 * 11 10 9 14 14 C 1.50707 * 109.47497 * 180.02562 * 11 10 9 15 15 H 1.08005 * 119.99180 * 3.75238 * 14 11 10 16 16 C 1.37868 * 120.00340 * 183.75440 * 14 11 10 17 17 N 1.31519 * 120.00134 * 353.42894 * 16 14 11 18 18 Si 1.86799 * 120.00081 * 173.42414 * 16 14 11 19 19 H 1.48500 * 109.47107 * 0.02562 * 18 16 14 20 20 H 1.48492 * 109.47428 * 239.99892 * 18 16 14 21 21 H 1.48503 * 109.47044 * 120.00136 * 18 16 14 22 22 C 1.46924 * 118.73828 * 306.09769 * 6 5 4 23 23 C 1.53042 * 109.46035 * 119.96085 * 2 1 3 24 24 H 1.09000 * 109.49746 * 61.43759 * 23 2 1 25 25 C 1.52991 * 109.52585 * 301.35272 * 23 2 1 26 26 H 1.09007 * 109.46989 * 300.03788 * 1 2 3 27 27 H 1.08995 * 109.47066 * 60.03428 * 1 2 3 28 28 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.49821 * 298.56584 * 4 2 1 30 30 H 1.09000 * 109.49760 * 58.62741 * 4 2 1 31 31 H 1.09001 * 109.73826 * 295.11948 * 5 4 2 32 32 H 1.08997 * 109.66792 * 174.55084 * 5 4 2 33 33 H 0.97006 * 120.00028 * 5.32817 * 9 7 6 34 34 H 1.09001 * 109.46974 * 60.00114 * 10 9 7 35 35 H 1.08998 * 109.47353 * 300.00107 * 10 9 7 36 36 H 1.08996 * 109.47484 * 174.30530 * 12 11 10 37 37 H 1.08997 * 109.46951 * 294.31144 * 12 11 10 38 38 H 1.09005 * 109.47196 * 54.30622 * 12 11 10 39 39 H 1.08997 * 109.46875 * 305.64530 * 13 11 10 40 40 H 1.09002 * 109.47164 * 65.64480 * 13 11 10 41 41 H 1.08992 * 109.47394 * 185.64569 * 13 11 10 42 42 H 0.96998 * 119.99924 * 4.71347 * 17 16 14 43 43 H 1.09002 * 109.58704 * 173.65114 * 22 6 5 44 44 H 1.09004 * 109.58697 * 293.92697 * 22 6 5 45 45 H 1.09004 * 109.47875 * 300.14555 * 25 23 2 46 46 H 1.09001 * 109.47292 * 60.14696 * 25 23 2 47 47 H 1.09002 * 109.47348 * 180.14446 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5756 -0.6848 -1.2642 6 7 4.0679 -1.2488 0.0000 7 6 4.9621 -2.2572 0.0001 8 8 5.2889 -2.7799 1.0481 9 7 5.4942 -2.6860 -1.1615 10 6 6.3756 -3.8562 -1.1757 11 6 6.8384 -4.1287 -2.6082 12 6 7.5983 -2.9115 -3.1391 13 6 5.6210 -4.3965 -3.4954 14 6 7.7446 -5.3328 -2.6230 15 1 7.9197 -5.8879 -1.7132 16 6 8.3500 -5.7257 -3.7977 17 7 8.0380 -5.1319 -4.9289 18 14 9.6135 -7.1014 -3.7826 19 1 9.7848 -7.6010 -2.3946 20 1 10.9117 -6.5869 -4.2877 21 1 9.1481 -8.2106 -4.6535 22 6 3.5714 -0.6885 1.2642 23 6 2.0399 -0.7206 1.2502 24 1 1.6979 -1.7555 1.2384 25 6 1.5029 -0.0194 2.4994 26 1 -0.3633 0.5145 0.8897 27 1 -0.3633 0.5133 -0.8903 28 1 -0.3633 -1.0277 0.0005 29 1 1.6978 -1.7557 -1.2382 30 1 1.6567 -0.2211 -2.1398 31 1 3.9189 0.3450 -1.3632 32 1 3.9487 -1.2783 -2.0989 33 1 5.2936 -2.2199 -1.9883 34 1 5.8341 -4.7235 -0.7980 35 1 7.2427 -3.6656 -0.5434 36 1 8.0146 -3.1422 -4.1196 37 1 6.9159 -2.0658 -3.2238 38 1 8.4059 -2.6592 -2.4518 39 1 5.0249 -5.1993 -3.0616 40 1 5.0165 -3.4922 -3.5654 41 1 5.9542 -4.6887 -4.4911 42 1 7.4339 -4.3729 -4.9277 43 1 3.9417 -1.2843 2.0985 44 1 3.9164 0.3403 1.3685 45 1 1.8442 1.0157 2.5102 46 1 0.4132 -0.0426 2.4889 47 1 1.8686 -0.5318 3.3892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335590467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:22 Heat of formation + Delta-G solvation = -59.276895 kcal Electronic energy + Delta-G solvation = -23604.133853 eV Core-core repulsion = 20399.729299 eV Total energy + Delta-G solvation = -3204.404554 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.60072 -39.51364 -38.45213 -35.65747 -35.00424 -33.18544 -32.29877 -29.37569 -28.20742 -27.88815 -27.41546 -25.96786 -24.27751 -23.18792 -21.45811 -20.74168 -20.63729 -19.45799 -18.39926 -17.38759 -16.73975 -15.96969 -15.74533 -15.64517 -15.51465 -15.33598 -15.13781 -14.53827 -14.51059 -14.38730 -14.27093 -13.82789 -13.36881 -13.22564 -12.96810 -12.88149 -12.77488 -12.70056 -12.61886 -12.54409 -12.43245 -12.00016 -11.93151 -11.76152 -11.73036 -11.48632 -11.41588 -11.16884 -11.08773 -10.51758 -10.29187 -10.18506 -9.46956 -8.39084 -6.24678 1.56254 1.62985 1.65026 1.80761 2.08596 2.59373 2.97498 3.24595 3.71750 3.76480 3.81605 4.00064 4.15482 4.26251 4.32769 4.36523 4.43864 4.48042 4.61215 4.64663 4.72023 4.78409 4.80393 4.81726 4.84140 4.86368 4.91853 4.96553 5.04740 5.06905 5.14786 5.17212 5.18599 5.21864 5.25401 5.44493 5.47558 5.54622 5.60104 5.63014 5.81453 5.92466 6.16900 6.31689 6.74304 6.96079 7.49961 7.53256 8.88924 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035347 B = 0.003603 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.962730 B = 7769.508404 C = 8177.933628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 H 0.086 0.914 4 C -0.125 4.125 5 C 0.103 3.897 6 N -0.627 5.627 7 C 0.696 3.304 8 O -0.642 6.642 9 N -0.728 5.728 10 C 0.176 3.824 11 C 0.036 3.964 12 C -0.133 4.133 13 C -0.131 4.131 14 C -0.604 4.604 15 H 0.036 0.964 16 C -0.014 4.014 17 N -0.938 5.938 18 Si 1.108 2.892 19 H -0.282 1.282 20 H -0.280 1.280 21 H -0.282 1.282 22 C 0.130 3.870 23 C -0.096 4.096 24 H 0.051 0.949 25 C -0.142 4.142 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.403 0.597 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.029 0.971 39 H 0.028 0.972 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.280 0.720 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.349 14.839 6.954 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 H 0.104 0.896 4 C -0.164 4.164 5 C -0.019 4.019 6 N -0.364 5.364 7 C 0.397 3.603 8 O -0.525 6.525 9 N -0.385 5.385 10 C 0.051 3.949 11 C 0.035 3.965 12 C -0.191 4.191 13 C -0.189 4.189 14 C -0.643 4.643 15 H 0.054 0.946 16 C -0.214 4.214 17 N -0.579 5.579 18 Si 0.933 3.067 19 H -0.208 1.208 20 H -0.206 1.206 21 H -0.208 1.208 22 C 0.008 3.992 23 C -0.116 4.116 24 H 0.070 0.930 25 C -0.199 4.199 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.242 0.758 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.165 13.541 6.707 20.712 hybrid contribution -0.729 0.584 0.678 1.154 sum -14.895 14.124 7.385 21.815 Atomic orbital electron populations 1.21856 0.93996 1.01636 1.02711 1.21138 0.96511 0.99595 0.92805 0.89584 1.22051 0.93519 1.01100 0.99697 1.21996 0.95617 0.99855 0.84421 1.47350 1.44076 1.36045 1.08907 1.16166 0.79829 0.80411 0.83860 1.90834 1.67452 1.61726 1.32446 1.45341 1.51429 1.33219 1.08547 1.20973 0.90824 0.85074 0.98020 1.18539 0.93401 0.94430 0.90156 1.21869 0.99285 0.96738 1.01215 1.21890 0.97142 0.98991 1.00886 1.22108 1.30631 1.14063 0.97472 0.94563 1.26748 0.99754 1.03190 0.91668 1.70884 1.36321 1.22969 1.27719 0.83013 0.74436 0.73617 0.75650 1.20760 1.20619 1.20762 1.21638 0.94309 0.98531 0.84752 1.21490 0.93381 0.99768 0.96935 0.93027 1.21793 1.01784 1.00752 0.95604 0.91321 0.91669 0.93663 0.93085 0.88342 0.89114 0.90695 0.75758 0.94898 0.94726 0.93020 0.93354 0.95193 0.95300 0.93427 0.93175 0.90405 0.91725 0.90063 0.91207 0.90879 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.81 71.98 0.63 -1.03 16 2 C -0.08 -1.14 2.23 -10.77 -0.02 -1.16 16 3 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 4 C -0.13 -1.99 5.38 30.82 0.17 -1.82 16 5 C 0.10 2.02 6.37 86.51 0.55 2.57 16 6 N -0.63 -17.16 2.97 -836.07 -2.48 -19.64 16 7 C 0.70 26.12 8.29 179.06 1.48 27.60 16 8 O -0.64 -29.74 15.77 -4.00 -0.06 -29.81 16 9 N -0.73 -26.84 4.89 -478.55 -2.34 -29.18 16 10 C 0.18 7.90 4.51 86.38 0.39 8.29 16 11 C 0.04 1.68 0.50 -52.93 -0.03 1.65 16 12 C -0.13 -5.90 7.88 71.98 0.57 -5.33 16 13 C -0.13 -5.78 7.93 71.98 0.57 -5.21 16 14 C -0.60 -33.16 8.01 25.60 0.20 -32.96 16 15 H 0.04 2.06 7.75 -2.91 -0.02 2.03 16 16 C -0.01 -0.75 5.09 84.65 0.43 -0.32 16 17 N -0.94 -53.09 12.20 21.44 0.26 -52.83 16 18 Si 1.11 50.02 29.91 68.60 2.05 52.08 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 C 0.13 3.05 5.72 86.36 0.49 3.55 16 23 C -0.10 -1.73 2.41 -10.72 -0.03 -1.76 16 24 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 25 C -0.14 -1.90 8.81 71.98 0.63 -1.27 16 26 H 0.07 0.66 6.41 -2.38 -0.02 0.65 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.53 5.75 -2.39 -0.01 1.51 16 33 H 0.40 12.77 3.85 -92.70 -0.36 12.41 16 34 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 2.52 5.19 -2.39 -0.01 2.51 16 37 H 0.05 1.77 7.03 -2.39 -0.02 1.75 16 38 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.05 1.72 7.03 -2.39 -0.02 1.71 16 41 H 0.05 2.44 5.27 -2.39 -0.01 2.43 16 42 H 0.28 15.31 3.51 -92.71 -0.33 14.99 16 43 H 0.06 1.89 7.00 -2.39 -0.02 1.87 16 44 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 0.82 6.42 -2.39 -0.02 0.80 16 47 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -67.58 348.17 4.51 -63.07 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 1.02 Total: 23.51 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 6.05 Total: -7.20 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -4.56 Total: -101.65 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.06 Total: -29.81 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.05 Total: 52.08 kcal Total: -67.58 4.51 -63.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335590467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.793 kcal (2) G-P(sol) polarization free energy of solvation -67.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds