Wall clock time and date at job start Tue Mar 31 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.32539 * 2 1 4 4 C 1.47090 * 109.18920 * 119.56374 * 2 1 3 5 5 C 1.52428 * 114.21949 * 182.96039 * 4 2 1 6 6 C 1.50879 * 109.43465 * 274.84243 * 5 4 2 7 7 C 1.53951 * 109.98846 * 92.01469 * 6 5 4 8 8 N 1.47597 * 112.14309 * 319.49863 * 7 6 5 9 9 C 1.34778 * 118.64782 * 137.89283 * 8 7 6 10 10 O 1.21594 * 119.99477 * 355.16301 * 9 8 7 11 11 N 1.34774 * 120.00347 * 175.16786 * 9 8 7 12 12 C 1.46501 * 119.99896 * 185.12571 * 11 9 8 13 13 C 1.53001 * 109.47205 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.47013 * 299.99965 * 13 12 11 15 15 C 1.52998 * 109.47102 * 59.99593 * 13 12 11 16 16 C 1.50698 * 109.47520 * 179.97438 * 13 12 11 17 17 H 1.07998 * 119.99805 * 359.97438 * 16 13 12 18 18 C 1.37872 * 120.00194 * 180.02562 * 16 13 12 19 19 N 1.31515 * 119.99930 * 359.97438 * 18 16 13 20 20 Si 1.86804 * 120.00031 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47047 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46973 * 119.99519 * 20 18 16 23 23 H 1.48493 * 109.47280 * 239.99645 * 20 18 16 24 24 C 1.44579 * 122.71386 * 317.87116 * 8 7 6 25 25 H 1.09000 * 109.47198 * 179.65852 * 1 2 3 26 26 H 1.09007 * 109.47191 * 299.65034 * 1 2 3 27 27 H 1.09000 * 109.47209 * 59.65423 * 1 2 3 28 28 H 1.08996 * 108.51563 * 304.22923 * 4 2 1 29 29 H 1.09005 * 108.51153 * 61.87883 * 4 2 1 30 30 H 1.09004 * 109.29558 * 154.94953 * 5 4 2 31 31 H 1.08999 * 109.60692 * 34.93197 * 5 4 2 32 32 H 1.08990 * 109.36758 * 331.88958 * 6 5 4 33 33 H 1.09002 * 109.36931 * 212.14018 * 6 5 4 34 34 H 1.09003 * 108.94880 * 80.18374 * 7 6 5 35 35 H 1.09003 * 108.94743 * 198.81240 * 7 6 5 36 36 H 0.96994 * 120.00025 * 5.12290 * 11 9 8 37 37 H 1.08994 * 109.47344 * 299.99501 * 12 11 9 38 38 H 1.09001 * 109.47418 * 59.99752 * 12 11 9 39 39 H 1.09002 * 109.47077 * 60.00209 * 14 13 12 40 40 H 1.09001 * 109.47261 * 179.97438 * 14 13 12 41 41 H 1.08998 * 109.47041 * 300.00140 * 14 13 12 42 42 H 1.09004 * 109.47268 * 60.00228 * 15 13 12 43 43 H 1.09004 * 109.47508 * 179.97438 * 15 13 12 44 44 H 1.08997 * 109.47447 * 300.00608 * 15 13 12 45 45 H 0.97000 * 120.00037 * 180.02562 * 19 18 16 46 46 H 1.08995 * 109.45126 * 210.76637 * 24 8 7 47 47 H 1.09005 * 109.44622 * 330.68610 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8908 1.0286 0.0000 4 6 2.0135 -0.6854 1.2083 5 6 3.5301 -0.6892 1.3605 6 6 4.1093 -1.8489 0.5884 7 6 4.4777 -1.4002 -0.8375 8 7 3.4632 -0.4978 -1.4163 9 6 3.8782 0.5805 -2.1103 10 8 5.0638 0.8424 -2.1749 11 7 2.9791 1.3684 -2.7326 12 6 3.4355 2.4739 -3.5786 13 6 2.2238 3.2037 -4.1618 14 6 1.3957 2.2280 -5.0003 15 6 1.3635 3.7546 -3.0228 16 6 2.6931 4.3413 -5.0316 17 1 3.7500 4.5256 -5.1558 18 6 1.7734 5.1474 -5.6681 19 7 0.4864 4.9233 -5.5165 20 14 2.3552 6.5579 -6.7458 21 1 3.8397 6.5972 -6.7508 22 1 1.8602 6.3589 -8.1316 23 1 1.8284 7.8392 -6.2112 24 6 2.0426 -0.7230 -1.2700 25 1 -0.3633 -1.0276 -0.0061 26 1 -0.3634 0.5084 0.8932 27 1 -0.3633 0.5192 -0.8869 28 1 1.5782 -0.1977 2.0805 29 1 1.6671 -1.7186 1.1821 30 1 3.7860 -0.7905 2.4152 31 1 3.9388 0.2448 0.9750 32 1 3.3738 -2.6515 0.5360 33 1 5.0036 -2.2105 1.0959 34 1 5.4366 -0.8827 -0.8091 35 1 4.5714 -2.2811 -1.4726 36 1 2.0299 1.2035 -2.6202 37 1 4.0257 3.1688 -2.9814 38 1 4.0480 2.0814 -4.3903 39 1 1.0561 1.4055 -4.3708 40 1 0.5321 2.7478 -5.4154 41 1 2.0085 1.8354 -5.8117 42 1 1.9534 4.4498 -2.4254 43 1 0.5004 4.2750 -3.4382 44 1 1.0240 2.9322 -2.3933 45 1 -0.1608 5.4901 -5.9646 46 1 1.5214 -0.3337 -2.1445 47 1 1.8520 -1.7925 -1.1806 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335591087.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:33 Heat of formation + Delta-G solvation = -45.710284 kcal Electronic energy + Delta-G solvation = -24105.848013 eV Core-core repulsion = 20902.031751 eV Total energy + Delta-G solvation = -3203.816262 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.39877 -37.96993 -36.35545 -34.10877 -33.88774 -32.77180 -30.68338 -28.22982 -26.19890 -25.69772 -25.63176 -25.01076 -23.84048 -21.23366 -20.39767 -19.17625 -18.82861 -17.78174 -16.50801 -15.78066 -15.49187 -14.83325 -14.68958 -14.64820 -14.31126 -13.79403 -13.62872 -13.22399 -12.90669 -12.78234 -12.69222 -12.54877 -12.16044 -11.98805 -11.82208 -11.36783 -11.32756 -11.16843 -10.93523 -10.85128 -10.75920 -10.63147 -10.56669 -10.46074 -10.35568 -10.17284 -9.62745 -9.59957 -9.26305 -8.75276 -8.57037 -8.37547 -8.05687 -5.99805 -4.09336 3.04195 3.28892 3.37479 3.42753 3.64702 4.33216 4.44261 4.62916 4.66995 4.79938 4.85425 4.99579 5.22826 5.27134 5.35187 5.46375 5.51910 5.55916 5.68420 5.71380 5.77091 5.89058 5.99859 6.00599 6.10432 6.18567 6.21905 6.26474 6.35368 6.40867 6.54157 6.78847 6.84740 6.85448 6.96427 7.06394 7.15881 7.31299 7.43586 7.58736 7.72487 8.03847 8.15367 8.41163 8.49717 8.90808 9.09501 9.56338 11.01677 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.004343 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.802171 B = 6445.533217 C = 7026.621526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 H 0.075 0.925 4 C -0.108 4.108 5 C -0.117 4.117 6 C -0.129 4.129 7 C 0.129 3.871 8 N -0.627 5.627 9 C 0.696 3.304 10 O -0.600 6.600 11 N -0.733 5.733 12 C 0.149 3.851 13 C 0.056 3.944 14 C -0.129 4.129 15 C -0.128 4.128 16 C -0.503 4.503 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.119 3.881 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.394 0.606 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.004 0.996 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.005 0.995 45 H 0.259 0.741 46 H 0.075 0.925 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.688 -13.427 12.070 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 H 0.093 0.907 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.168 4.168 7 C 0.006 3.994 8 N -0.364 5.364 9 C 0.397 3.603 10 O -0.479 6.479 11 N -0.389 5.389 12 C 0.026 3.974 13 C 0.055 3.945 14 C -0.186 4.186 15 C -0.186 4.186 16 C -0.542 4.542 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.006 4.006 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.231 0.769 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.023 0.977 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.103 0.897 44 H 0.024 0.976 45 H 0.069 0.931 46 H 0.093 0.907 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.013 -13.164 11.919 17.758 hybrid contribution -0.291 0.676 -0.491 0.885 sum -0.278 -12.488 11.428 16.930 Atomic orbital electron populations 1.21817 0.94387 1.01776 1.02446 1.20902 0.96009 1.00856 0.95660 0.90702 1.20451 0.95719 1.00680 0.97732 1.21026 0.95527 0.99446 0.99475 1.21781 1.01357 0.98249 0.95391 1.21612 0.92222 0.92704 0.92837 1.46848 1.05870 1.26721 1.57006 1.16109 0.85518 0.79796 0.78883 1.90855 1.15599 1.74077 1.67416 1.45683 1.08727 1.33220 1.51245 1.21575 0.98492 0.85782 0.91587 1.18364 0.90165 0.93090 0.92888 1.21812 1.02156 0.96370 0.98303 1.21806 1.02119 0.98080 0.96614 1.21027 0.93057 1.12298 1.27782 0.92379 1.24874 0.94874 0.97394 0.96380 1.69816 1.00268 1.38912 1.43516 0.86526 0.79029 0.82179 0.80217 1.19754 1.21095 1.21099 1.21510 0.81166 1.00623 0.97287 0.92683 0.92453 0.91988 0.92528 0.92415 0.92233 0.91317 0.91839 0.90942 0.89188 0.92698 0.76883 0.92967 0.93134 0.97731 0.89644 0.95467 0.95493 0.89666 0.97636 0.93125 0.90720 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.10 37.16 0.34 -1.04 16 2 C -0.11 -1.23 2.61 -92.47 -0.24 -1.48 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.11 -1.03 4.38 -29.86 -0.13 -1.16 16 5 C -0.12 -1.19 5.49 -28.09 -0.15 -1.34 16 6 C -0.13 -1.20 5.72 -27.30 -0.16 -1.35 16 7 C 0.13 1.58 6.13 -2.95 -0.02 1.56 16 8 N -0.63 -8.91 2.23 -178.27 -0.40 -9.31 16 9 C 0.70 12.99 8.21 -86.92 -0.71 12.28 16 10 O -0.60 -13.41 15.62 5.28 0.08 -13.33 16 11 N -0.73 -13.76 4.79 -65.22 -0.31 -14.07 16 12 C 0.15 3.28 4.51 -4.04 -0.02 3.26 16 13 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 14 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 15 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 16 C -0.50 -13.29 8.01 -34.44 -0.28 -13.56 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 19 N -0.89 -23.63 9.35 55.43 0.52 -23.11 16 20 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.12 1.37 4.53 -4.09 -0.02 1.36 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.52 8.10 -51.93 -0.42 0.09 16 29 H 0.06 0.49 7.35 -51.93 -0.38 0.10 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.89 7.47 -51.93 -0.39 0.50 16 32 H 0.06 0.52 7.31 -51.93 -0.38 0.14 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.28 6.91 -51.93 -0.36 0.93 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.39 6.76 3.75 -40.82 -0.15 6.61 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 40 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 44 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 45 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 46 H 0.07 0.91 6.08 -51.93 -0.32 0.60 16 47 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -28.79 349.86 -9.17 -37.96 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -8.35 Total: 4.64 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -0.96 Total: -3.86 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.19 Total: -46.49 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.79 -9.17 -37.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335591087.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.748 kcal (2) G-P(sol) polarization free energy of solvation -28.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds