Wall clock time and date at job start Tue Mar 31 2020 06:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.50032 * 2 1 4 4 C 1.53037 * 109.49824 * 239.93060 * 2 1 3 5 5 C 1.53043 * 109.53575 * 178.65165 * 4 2 1 6 6 C 1.53188 * 109.31460 * 61.36835 * 5 4 2 7 7 N 1.46927 * 108.77497 * 305.36461 * 6 5 4 8 8 C 1.34770 * 120.63342 * 233.58291 * 7 6 5 9 9 O 1.21591 * 120.00539 * 174.94724 * 8 7 6 10 10 N 1.34776 * 119.99938 * 354.95022 * 8 7 6 11 11 C 1.46507 * 120.00268 * 184.98111 * 10 8 7 12 12 C 1.52998 * 109.47176 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47164 * 299.99992 * 12 11 10 14 14 C 1.53002 * 109.47207 * 59.99909 * 12 11 10 15 15 C 1.50698 * 109.47145 * 180.02562 * 12 11 10 16 16 H 1.08002 * 119.99900 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00060 * 180.02562 * 15 12 11 18 18 N 1.31516 * 120.00134 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99839 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46872 * 89.99885 * 19 17 15 21 21 H 1.48497 * 109.46813 * 209.99503 * 19 17 15 22 22 H 1.48489 * 109.47214 * 329.99714 * 19 17 15 23 23 C 1.46932 * 118.74018 * 53.60691 * 7 6 5 24 24 H 1.09000 * 109.58597 * 66.17692 * 23 7 6 25 25 C 1.52993 * 109.58766 * 186.60631 * 23 7 6 26 26 H 1.08998 * 109.46992 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47137 * 299.99860 * 1 2 3 28 28 H 1.08994 * 109.46745 * 60.00471 * 1 2 3 29 29 H 1.09000 * 109.46601 * 298.67028 * 4 2 1 30 30 H 1.09000 * 109.46139 * 58.63638 * 4 2 1 31 31 H 1.08999 * 109.49540 * 181.31902 * 5 4 2 32 32 H 1.09001 * 109.49856 * 301.38178 * 5 4 2 33 33 H 1.09005 * 109.58774 * 65.14765 * 6 5 4 34 34 H 1.08996 * 109.59278 * 185.57325 * 6 5 4 35 35 H 0.97000 * 119.99863 * 4.97689 * 10 8 7 36 36 H 1.08993 * 109.47049 * 299.99861 * 11 10 8 37 37 H 1.09004 * 109.46816 * 59.99822 * 11 10 8 38 38 H 1.08998 * 109.47086 * 60.00149 * 13 12 11 39 39 H 1.08997 * 109.47045 * 179.97438 * 13 12 11 40 40 H 1.08991 * 109.47305 * 299.99889 * 13 12 11 41 41 H 1.09006 * 109.47204 * 59.99692 * 14 12 11 42 42 H 1.08997 * 109.47308 * 179.97438 * 14 12 11 43 43 H 1.08998 * 109.47288 * 300.00001 * 14 12 11 44 44 H 0.96996 * 119.99937 * 180.02562 * 18 17 15 45 45 H 1.08997 * 109.47021 * 176.74398 * 25 23 7 46 46 H 1.09001 * 109.47157 * 296.73552 * 25 23 7 47 47 H 1.08993 * 109.47569 * 56.73625 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0409 -0.7228 -1.2485 5 6 3.5709 -0.6940 -1.2664 6 6 4.1060 -1.4255 -0.0314 7 7 3.5053 -0.8283 1.1691 8 6 4.2818 -0.3853 2.1777 9 8 3.7797 0.1896 3.1242 10 7 5.6148 -0.5795 2.1371 11 6 6.4461 -0.1966 3.2812 12 6 7.9103 -0.5215 2.9792 13 6 8.0570 -2.0226 2.7220 14 6 8.3599 0.2546 1.7397 15 6 8.7652 -0.1282 4.1562 16 1 8.3098 0.3101 5.0319 17 6 10.1290 -0.3270 4.1148 18 7 10.6837 -0.8603 3.0482 19 14 11.1888 0.1613 5.5736 20 1 11.3002 -0.9857 6.5103 21 1 12.5419 0.5439 5.0963 22 1 10.5667 1.3135 6.2737 23 6 2.0419 -0.7236 1.2495 24 1 1.6063 -1.7216 1.2979 25 6 1.6523 0.0704 2.4978 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5137 -0.8900 29 1 1.6973 -1.7572 -1.2354 30 1 1.6578 -0.2243 -2.1389 31 1 3.9335 -1.1885 -2.1676 32 1 3.9155 0.3400 -1.2552 33 1 3.8387 -2.4808 -0.0874 34 1 5.1902 -1.3230 0.0129 35 1 6.0240 -0.9729 1.3505 36 1 6.3412 0.8727 3.4647 37 1 6.1261 -0.7499 4.1641 38 1 7.4387 -2.3075 1.8708 39 1 9.1001 -2.2540 2.5064 40 1 7.7369 -2.5755 3.6049 41 1 8.2553 1.3241 1.9229 42 1 9.4031 0.0235 1.5248 43 1 7.7415 -0.0303 0.8885 44 1 11.6430 -1.0004 3.0192 45 1 0.5700 0.1965 2.5251 46 1 1.9777 -0.4687 3.3876 47 1 2.1316 1.0489 2.4704 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335591120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:57 Heat of formation + Delta-G solvation = -30.968110 kcal Electronic energy + Delta-G solvation = -23878.130867 eV Core-core repulsion = 20674.953874 eV Total energy + Delta-G solvation = -3203.176993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.47751 -37.90404 -36.29427 -34.30790 -33.01502 -32.46950 -30.75762 -28.33687 -26.40164 -25.70256 -25.59182 -24.92058 -23.54679 -21.65640 -20.58628 -19.44063 -18.72207 -17.47254 -15.97926 -15.81056 -15.49299 -14.70308 -14.70015 -14.62913 -14.28158 -13.86440 -13.54604 -13.15408 -12.89257 -12.83095 -12.60599 -12.28971 -12.15671 -11.95047 -11.86236 -11.62685 -11.36285 -11.17050 -11.09128 -10.84174 -10.82943 -10.78816 -10.66783 -10.39402 -10.35210 -10.16642 -9.60072 -9.30404 -8.83757 -8.74247 -8.48863 -8.36998 -8.05094 -6.00058 -4.09783 3.00018 3.29837 3.36719 3.41259 3.66621 4.31277 4.44004 4.64057 4.67214 4.68698 4.89379 5.15450 5.26734 5.27821 5.32316 5.41653 5.53680 5.57838 5.61046 5.66704 5.79231 5.90681 5.93529 5.97665 6.06909 6.21158 6.24596 6.39912 6.43717 6.52872 6.59788 6.81914 6.84699 6.92440 6.97429 7.06076 7.18382 7.34855 7.43519 7.58319 7.71957 8.03447 8.15034 8.40997 8.50262 8.90248 9.12949 9.55855 11.01398 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034454 B = 0.003864 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.477386 B = 7245.550163 C = 7757.686587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 H 0.074 0.926 4 C -0.113 4.113 5 C -0.135 4.135 6 C 0.112 3.888 7 N -0.633 5.633 8 C 0.700 3.300 9 O -0.590 6.590 10 N -0.736 5.736 11 C 0.150 3.850 12 C 0.056 3.944 13 C -0.128 4.128 14 C -0.128 4.128 15 C -0.504 4.504 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.168 3.832 24 H 0.063 0.937 25 C -0.134 4.134 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.391 0.609 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.004 0.996 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.004 0.996 44 H 0.259 0.741 45 H 0.037 0.963 46 H 0.074 0.926 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.664 -1.780 -10.171 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.174 4.174 6 C -0.012 4.012 7 N -0.371 5.371 8 C 0.402 3.598 9 O -0.470 6.470 10 N -0.392 5.392 11 C 0.027 3.973 12 C 0.055 3.945 13 C -0.186 4.186 14 C -0.186 4.186 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.135 4.135 18 N -0.525 5.525 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C 0.064 3.936 24 H 0.081 0.919 25 C -0.190 4.190 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.228 0.772 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.023 0.977 39 H 0.103 0.897 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.103 0.897 43 H 0.023 0.977 44 H 0.069 0.931 45 H 0.055 0.945 46 H 0.093 0.907 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.799 -1.418 -9.496 18.488 hybrid contribution 0.901 -0.005 0.237 0.932 sum -14.898 -1.423 -9.258 17.598 Atomic orbital electron populations 1.21822 0.94643 1.01841 1.01962 1.21606 0.95739 1.00314 0.94863 0.90785 1.21567 0.95219 1.00671 0.97562 1.21924 0.96160 1.01604 0.97694 1.21583 0.98047 0.96933 0.84650 1.47328 1.05991 1.65592 1.18231 1.16055 0.81785 0.79515 0.82440 1.90923 1.72372 1.47852 1.35816 1.45801 1.05001 1.66913 1.21511 1.21554 0.91128 0.98799 0.85811 1.18361 0.88239 0.92853 0.95062 1.21808 1.02751 0.97459 0.96605 1.21806 1.03033 0.98136 0.95634 1.20992 0.91667 1.40856 1.00766 0.92423 1.24878 0.97832 0.94900 0.95916 1.69806 1.10960 1.44123 1.27644 0.86573 0.79640 0.78912 0.82760 1.20736 1.21303 1.19894 1.21049 0.78434 0.98519 0.95579 0.91906 1.22213 0.97971 1.02132 0.96731 0.92684 0.92052 0.92655 0.91891 0.91874 0.90795 0.91405 0.91649 0.90245 0.77170 0.92991 0.93133 0.97713 0.89672 0.95480 0.95473 0.89667 0.97728 0.93056 0.94458 0.90748 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.97 37.16 0.33 -0.86 16 2 C -0.11 -1.08 2.34 -90.50 -0.21 -1.29 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.11 -0.99 5.17 -26.69 -0.14 -1.13 16 5 C -0.14 -1.29 6.08 -26.61 -0.16 -1.45 16 6 C 0.11 1.28 6.39 -3.71 -0.02 1.26 16 7 N -0.63 -9.12 2.97 -170.91 -0.51 -9.62 16 8 C 0.70 12.89 8.21 -86.92 -0.71 12.18 16 9 O -0.59 -12.50 11.75 5.29 0.06 -12.44 16 10 N -0.74 -13.75 4.87 -65.22 -0.32 -14.07 16 11 C 0.15 3.29 4.51 -4.04 -0.02 3.27 16 12 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 13 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 14 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 15 C -0.50 -13.33 8.01 -34.44 -0.28 -13.61 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 18 N -0.89 -23.71 9.35 55.43 0.52 -23.19 16 19 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 23 C 0.17 2.12 2.96 -67.60 -0.20 1.92 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 C -0.13 -1.90 7.41 37.15 0.28 -1.62 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.52 6.55 -51.93 -0.34 0.18 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.94 5.64 -51.93 -0.29 0.65 16 35 H 0.39 6.69 3.65 -40.82 -0.15 6.54 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 39 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 43 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 44 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 45 H 0.04 0.43 6.49 -51.93 -0.34 0.10 16 46 H 0.07 1.24 6.68 -51.93 -0.35 0.90 16 47 H 0.07 1.19 6.81 -51.93 -0.35 0.84 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -28.20 345.24 -8.97 -37.17 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -8.20 Total: 4.85 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.70 Total: -3.73 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -0.31 Total: -46.89 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.06 Total: -12.44 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.20 -8.97 -37.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335591120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.203 kcal (2) G-P(sol) polarization free energy of solvation -28.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds