Wall clock time and date at job start Tue Mar 31 2020 06:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.70214 * 2 1 4 4 C 1.52764 * 109.50901 * 239.88297 * 2 1 3 5 5 H 1.08993 * 109.38803 * 305.63365 * 4 2 1 6 6 C 1.53004 * 109.56114 * 65.66965 * 4 2 1 7 7 C 1.53041 * 109.38440 * 185.70295 * 4 2 1 8 8 C 1.53043 * 109.53530 * 61.23963 * 7 4 2 9 9 C 1.53189 * 109.31344 * 298.63738 * 8 7 4 10 10 N 1.46923 * 109.58612 * 120.35842 * 2 1 3 11 11 C 1.34777 * 120.63126 * 353.41715 * 10 2 1 12 12 O 1.21582 * 119.99977 * 4.51965 * 11 10 2 13 13 N 1.34780 * 119.99711 * 184.52111 * 11 10 2 14 14 C 1.46499 * 119.99772 * 184.85900 * 13 11 10 15 15 C 1.53001 * 109.47259 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47037 * 59.99458 * 15 14 13 17 17 C 1.53005 * 109.46857 * 299.99935 * 15 14 13 18 18 C 1.50694 * 109.47292 * 180.02562 * 15 14 13 19 19 H 1.08000 * 120.00280 * 5.12724 * 18 15 14 20 20 C 1.37882 * 119.99891 * 185.13549 * 18 15 14 21 21 N 1.31517 * 120.00064 * 150.35690 * 20 18 15 22 22 Si 1.86797 * 119.99839 * 330.34897 * 20 18 15 23 23 H 1.48497 * 109.47211 * 180.02562 * 22 20 18 24 24 H 1.48500 * 109.47475 * 300.00507 * 22 20 18 25 25 H 1.48504 * 109.47097 * 60.00341 * 22 20 18 26 26 H 1.09001 * 109.47180 * 303.67994 * 1 2 3 27 27 H 1.08998 * 109.47426 * 63.68521 * 1 2 3 28 28 H 1.09008 * 109.47005 * 183.68570 * 1 2 3 29 29 H 1.09002 * 109.47105 * 179.97438 * 6 4 2 30 30 H 1.08995 * 109.47197 * 299.96302 * 6 4 2 31 31 H 1.08999 * 109.47540 * 59.96767 * 6 4 2 32 32 H 1.09001 * 109.45914 * 301.22593 * 7 4 2 33 33 H 1.08995 * 109.46152 * 181.25858 * 7 4 2 34 34 H 1.08997 * 109.49669 * 178.68174 * 8 7 4 35 35 H 1.09003 * 109.49422 * 58.58827 * 8 7 4 36 36 H 1.09000 * 109.58741 * 294.84426 * 9 8 7 37 37 H 1.09004 * 109.58726 * 174.42529 * 9 8 7 38 38 H 0.97000 * 120.00001 * 4.86387 * 13 11 10 39 39 H 1.08997 * 109.47033 * 60.00000 * 14 13 11 40 40 H 1.09002 * 109.47095 * 300.00136 * 14 13 11 41 41 H 1.09002 * 109.46926 * 173.93137 * 16 15 14 42 42 H 1.08997 * 109.47635 * 293.93398 * 16 15 14 43 43 H 1.09003 * 109.47032 * 53.94076 * 16 15 14 44 44 H 1.09000 * 109.47243 * 302.84648 * 17 15 14 45 45 H 1.09004 * 109.46811 * 62.84625 * 17 15 14 46 46 H 1.09002 * 109.47005 * 182.84206 * 17 15 14 47 47 H 0.96998 * 119.99411 * 354.98159 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7225 -1.2456 5 1 1.5964 -1.7168 -1.2943 6 6 1.6514 0.0720 -2.4940 7 6 3.5639 -0.8461 -1.1728 8 6 3.9523 -1.6686 0.0580 9 6 3.4645 -0.9519 1.3210 10 7 2.0225 -0.6996 1.1944 11 6 1.1673 -1.1070 2.1531 12 8 -0.0307 -0.9706 1.9970 13 7 1.6402 -1.6657 3.2848 14 6 0.7099 -2.2052 4.2796 15 6 1.4992 -2.7762 5.4593 16 6 2.3393 -1.6670 6.0954 17 6 2.4202 -3.8931 4.9639 18 6 0.5422 -3.3317 6.4823 19 1 -0.5170 -3.3579 6.2727 20 6 1.0187 -3.8064 7.6859 21 7 0.2653 -3.7442 8.7621 22 14 2.7344 -4.5380 7.7879 23 1 3.0052 -4.9724 9.1819 24 1 2.8286 -5.7080 6.8782 25 1 3.7333 -3.5158 7.3847 26 1 -0.3633 0.5699 0.8552 27 1 -0.3634 0.4556 -0.9211 28 1 -0.3633 -1.0256 0.0661 29 1 2.0165 -0.4445 -3.3817 30 1 0.5662 0.1598 -2.5454 31 1 2.0944 1.0667 -2.4443 32 1 4.0057 0.1476 -1.0996 33 1 3.9313 -1.3416 -2.0713 34 1 5.0363 -1.7761 0.0964 35 1 3.4905 -2.6541 -0.0024 36 1 3.9929 -0.0049 1.4309 37 1 3.6505 -1.5798 2.1924 38 1 2.5966 -1.7105 3.4407 39 1 0.1111 -2.9951 3.8262 40 1 0.0540 -1.4095 4.6328 41 1 2.8173 -2.0460 6.9988 42 1 3.1032 -1.3398 5.3901 43 1 1.6959 -0.8250 6.3509 44 1 1.8264 -4.6595 4.4657 45 1 3.1451 -3.4815 4.2616 46 1 2.9452 -4.3338 5.8114 47 1 -0.5959 -3.2993 8.7260 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335591122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:59 Heat of formation + Delta-G solvation = -19.460323 kcal Electronic energy + Delta-G solvation = -23984.485141 eV Core-core repulsion = 20781.807163 eV Total energy + Delta-G solvation = -3202.677978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.59290 -38.06348 -36.56821 -34.42115 -33.07901 -32.56108 -31.36065 -28.48453 -26.48305 -26.35068 -25.79060 -24.47749 -23.59672 -21.74582 -20.65685 -19.51312 -19.08654 -17.58437 -16.65716 -16.08208 -15.58799 -14.83418 -14.78028 -14.69982 -14.40609 -14.18995 -13.68021 -13.34228 -12.96775 -12.85842 -12.68624 -12.56976 -12.33187 -12.08787 -11.96624 -11.92501 -11.81341 -11.70469 -11.31103 -11.10334 -10.90601 -10.87693 -10.56396 -10.46007 -10.18510 -10.06289 -9.92657 -9.04111 -8.92293 -8.88519 -8.58946 -8.20860 -8.10740 -6.53480 -4.07604 2.88707 3.33220 3.39503 3.55486 3.62091 4.21892 4.46389 4.55438 4.60244 4.60873 4.81355 5.07034 5.12428 5.19917 5.24497 5.35705 5.46883 5.50240 5.54312 5.57853 5.71566 5.83368 5.83936 5.87938 5.90663 6.01349 6.09972 6.11805 6.14855 6.36170 6.38616 6.42977 6.54683 6.59535 6.67161 6.74405 6.82909 6.89846 7.08179 7.24207 7.30092 7.49576 8.14178 8.35000 8.36391 8.87306 9.00662 9.55305 10.83341 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031649 B = 0.004211 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.490941 B = 6648.110941 C = 7225.314616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.168 3.832 3 H 0.063 0.937 4 C -0.106 4.106 5 H 0.074 0.926 6 C -0.145 4.145 7 C -0.113 4.113 8 C -0.135 4.135 9 C 0.111 3.889 10 N -0.632 5.632 11 C 0.701 3.299 12 O -0.587 6.587 13 N -0.740 5.740 14 C 0.161 3.839 15 C 0.035 3.965 16 C -0.138 4.138 17 C -0.146 4.146 18 C -0.609 4.609 19 H 0.060 0.940 20 C 0.044 3.956 21 N -0.887 5.887 22 Si 1.050 2.950 23 H -0.300 1.300 24 H -0.288 1.288 25 H -0.278 1.278 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.390 0.610 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.019 0.981 43 H 0.045 0.955 44 H 0.050 0.950 45 H 0.024 0.976 46 H 0.041 0.959 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.320 6.895 -19.624 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.064 3.936 3 H 0.081 0.919 4 C -0.125 4.125 5 H 0.092 0.908 6 C -0.203 4.203 7 C -0.150 4.150 8 C -0.173 4.173 9 C -0.013 4.013 10 N -0.371 5.371 11 C 0.403 3.597 12 O -0.466 6.466 13 N -0.397 5.397 14 C 0.038 3.962 15 C 0.033 3.967 16 C -0.196 4.196 17 C -0.202 4.202 18 C -0.646 4.646 19 H 0.079 0.921 20 C -0.163 4.163 21 N -0.518 5.518 22 Si 0.883 3.117 23 H -0.228 1.228 24 H -0.216 1.216 25 H -0.206 1.206 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.226 0.774 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.043 0.957 46 H 0.059 0.941 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.435 6.230 -18.647 21.807 hybrid contribution -0.422 0.611 -0.977 1.227 sum 9.013 6.841 -19.624 22.652 Atomic orbital electron populations 1.22227 0.92436 1.04223 1.00243 1.20965 0.95943 0.93987 0.82673 0.91910 1.21526 0.95794 1.00363 0.94842 0.90768 1.21827 1.01878 0.99897 0.96682 1.21568 0.95429 1.00261 0.97780 1.21918 1.00995 0.99692 0.94744 1.21595 0.81294 1.00042 0.98363 1.47331 1.06216 1.62480 1.21059 1.16034 0.85023 0.78414 0.80218 1.90938 1.13839 1.62037 1.79775 1.45813 1.10682 1.63640 1.19550 1.21362 0.90977 0.96870 0.86991 1.18653 0.93817 0.91751 0.92451 1.22188 0.98214 0.99419 0.99745 1.22326 0.98794 1.00277 0.98847 1.21617 0.93926 1.47809 1.01235 0.92139 1.25660 1.04572 0.94694 0.91407 1.70841 1.12887 1.39861 1.28246 0.84197 0.76538 0.76952 0.73984 1.22789 1.21606 1.20577 0.90849 0.94333 0.90905 0.92597 0.92016 0.92659 0.91872 0.91810 0.90782 0.91371 0.91638 0.90311 0.77362 0.92755 0.92457 0.92703 0.96225 0.93609 0.93066 0.95702 0.94077 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 7.43 37.16 0.28 -1.58 16 2 C 0.17 2.02 2.94 -67.82 -0.20 1.82 16 3 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -1.02 2.32 -90.72 -0.21 -1.23 16 5 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.15 -1.14 8.97 37.16 0.33 -0.81 16 7 C -0.11 -0.92 5.17 -26.69 -0.14 -1.06 16 8 C -0.14 -1.19 6.08 -26.61 -0.16 -1.35 16 9 C 0.11 1.16 6.36 -3.71 -0.02 1.14 16 10 N -0.63 -8.61 2.98 -171.16 -0.51 -9.12 16 11 C 0.70 12.34 8.21 -86.91 -0.71 11.63 16 12 O -0.59 -12.10 11.74 5.29 0.06 -12.04 16 13 N -0.74 -13.02 4.88 -65.23 -0.32 -13.33 16 14 C 0.16 3.41 4.51 -4.04 -0.02 3.39 16 15 C 0.03 0.78 0.50 -155.66 -0.08 0.71 16 16 C -0.14 -2.93 7.90 37.16 0.29 -2.63 16 17 C -0.15 -3.00 7.70 37.16 0.29 -2.71 16 18 C -0.61 -16.56 8.41 -34.44 -0.29 -16.85 16 19 H 0.06 1.79 7.99 -52.49 -0.42 1.37 16 20 C 0.04 1.24 5.05 -17.82 -0.09 1.15 16 21 N -0.89 -26.57 13.70 55.43 0.76 -25.81 16 22 Si 1.05 24.95 23.47 -169.99 -3.99 20.96 16 23 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -6.52 6.76 56.52 0.38 -6.14 16 25 H -0.28 -6.03 5.78 56.52 0.33 -5.70 16 26 H 0.07 1.19 6.72 -51.93 -0.35 0.84 16 27 H 0.04 0.43 6.44 -51.93 -0.33 0.10 16 28 H 0.07 1.18 6.77 -51.92 -0.35 0.83 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.50 6.52 -51.93 -0.34 0.16 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.84 5.73 -51.93 -0.30 0.54 16 38 H 0.39 6.05 3.81 -40.82 -0.16 5.90 16 39 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.05 1.23 4.54 -51.93 -0.24 0.99 16 42 H 0.02 0.34 7.04 -51.93 -0.37 -0.03 16 43 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.02 0.42 6.94 -51.93 -0.36 0.06 16 46 H 0.04 0.88 2.28 -51.93 -0.12 0.76 16 47 H 0.27 8.13 8.73 -40.82 -0.36 7.77 16 LS Contribution 337.31 15.07 5.08 5.08 Total: -1.00 -30.23 337.31 -7.71 -37.95 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -8.07 Total: 4.70 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -0.73 Total: -8.39 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.07 Total: -48.27 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.06 Total: -12.04 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -3.99 Total: 20.96 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.23 -7.71 -37.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335591122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.486 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds