Wall clock time and date at job start Tue Mar 31 2020 06:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.49882 * 2 1 4 4 C 1.53035 * 109.52753 * 120.08050 * 2 1 3 5 5 C 1.53039 * 109.54076 * 181.33178 * 4 2 1 6 6 C 1.53617 * 109.24327 * 298.51557 * 5 4 2 7 7 N 1.46918 * 108.54834 * 54.85488 * 6 5 4 8 8 C 1.34775 * 120.63657 * 126.36594 * 7 6 5 9 9 O 1.21586 * 120.00152 * 184.94459 * 8 7 6 10 10 N 1.34779 * 119.99624 * 4.94333 * 8 7 6 11 11 C 1.46501 * 119.99789 * 174.79922 * 10 8 7 12 12 C 1.53001 * 109.47022 * 180.27729 * 11 10 8 13 13 C 1.53008 * 109.46997 * 299.99787 * 12 11 10 14 14 C 1.53002 * 109.47082 * 59.99695 * 12 11 10 15 15 C 1.50698 * 109.47409 * 179.97438 * 12 11 10 16 16 H 1.08006 * 119.99367 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00463 * 180.02562 * 15 12 11 18 18 N 1.31519 * 119.99448 * 359.97438 * 17 15 12 19 19 Si 1.86794 * 120.00082 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.46934 * 89.99996 * 19 17 15 21 21 H 1.48503 * 109.47104 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47132 * 329.99668 * 19 17 15 23 23 C 1.46933 * 118.73321 * 306.09830 * 7 6 5 24 24 H 1.09003 * 109.58127 * 173.78701 * 23 7 6 25 25 C 1.53001 * 109.58665 * 294.06487 * 23 7 6 26 26 H 1.08997 * 109.46577 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47208 * 300.05874 * 1 2 3 28 28 H 1.08995 * 109.46963 * 60.06610 * 1 2 3 29 29 H 1.09000 * 109.45977 * 301.35560 * 4 2 1 30 30 H 1.09001 * 109.46199 * 61.31468 * 4 2 1 31 31 H 1.09008 * 109.49751 * 58.59330 * 5 4 2 32 32 H 1.09003 * 109.50157 * 178.64748 * 5 4 2 33 33 H 1.09003 * 109.74034 * 295.11311 * 6 5 4 34 34 H 1.09007 * 109.66788 * 174.54977 * 6 5 4 35 35 H 0.97004 * 119.99975 * 355.07093 * 10 8 7 36 36 H 1.08997 * 109.46903 * 300.27053 * 11 10 8 37 37 H 1.08989 * 109.47147 * 60.27426 * 11 10 8 38 38 H 1.08997 * 109.46877 * 59.99771 * 13 12 11 39 39 H 1.08992 * 109.46752 * 179.97438 * 13 12 11 40 40 H 1.08994 * 109.46668 * 300.00301 * 13 12 11 41 41 H 1.08989 * 109.47247 * 60.00234 * 14 12 11 42 42 H 1.09006 * 109.46800 * 180.02562 * 14 12 11 43 43 H 1.09003 * 109.46915 * 299.99761 * 14 12 11 44 44 H 0.97006 * 119.99270 * 179.97438 * 18 17 15 45 45 H 1.08999 * 109.46705 * 60.00133 * 25 23 7 46 46 H 1.08994 * 109.47137 * 180.02562 * 25 23 7 47 47 H 1.09000 * 109.47365 * 300.00755 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0276 0.0000 4 6 2.0415 -0.7229 1.2481 5 6 3.5716 -0.6942 1.2653 6 6 4.1057 -1.4305 0.0274 7 7 3.5048 -0.8280 -1.1702 8 6 4.2807 -0.3847 -2.1791 9 8 3.7784 0.1926 -3.1239 10 7 5.6135 -0.5815 -2.1406 11 6 6.4433 -0.2026 -3.2870 12 6 7.9067 -0.5356 -2.9896 13 6 8.3642 0.2377 -1.7512 14 6 8.0460 -2.0376 -2.7333 15 6 8.7602 -0.1465 -4.1691 16 1 8.3043 0.2939 -5.0436 17 6 10.1228 -0.3536 -4.1323 18 7 10.6777 -0.8903 -3.0676 19 14 11.1805 0.1282 -5.5946 20 1 11.6398 1.5310 -5.4325 21 1 12.3587 -0.7726 -5.6714 22 1 10.3841 0.0090 -6.8423 23 6 2.0413 -0.7234 -1.2498 24 1 1.7633 -0.1597 -2.1403 25 6 1.4299 -2.1242 -1.3178 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5147 0.8894 28 1 -0.3633 0.5128 -0.8905 29 1 1.6589 -0.2246 2.1388 30 1 1.6980 -1.7573 1.2351 31 1 3.9162 0.3400 1.2535 32 1 3.9347 -1.1882 2.1666 33 1 3.8351 -2.4850 0.0810 34 1 5.1903 -1.3314 -0.0188 35 1 6.0228 -0.9776 -1.3555 36 1 6.1174 -0.7536 -4.1693 37 1 6.3439 0.8673 -3.4696 38 1 7.7468 -0.0441 -0.8983 39 1 9.4065 0.0001 -1.5391 40 1 8.2648 1.3077 -1.9338 41 1 7.7202 -2.5884 -3.6155 42 1 9.0886 -2.2747 -2.5210 43 1 7.4287 -2.3194 -1.8803 44 1 11.6364 -1.0364 -3.0419 45 1 1.7050 -2.6845 -0.4242 46 1 0.3445 -2.0444 -1.3772 47 1 1.8047 -2.6418 -2.2008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335591125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:02 Heat of formation + Delta-G solvation = -44.660340 kcal Electronic energy + Delta-G solvation = -23795.563327 eV Core-core repulsion = 20591.792594 eV Total energy + Delta-G solvation = -3203.770733 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.39867 -38.13129 -36.24507 -34.10016 -32.94857 -32.39694 -30.72683 -28.75419 -26.48163 -25.70114 -25.59332 -24.95365 -23.51875 -22.32341 -20.27333 -18.88806 -18.51824 -17.80539 -16.04307 -15.87629 -15.51030 -15.00159 -14.71116 -14.43501 -14.15044 -13.85771 -13.54844 -13.23017 -12.99962 -12.82399 -12.71803 -12.54941 -12.20247 -12.14516 -11.71955 -11.65841 -11.37185 -11.17289 -11.10306 -10.86324 -10.76811 -10.71804 -10.66808 -10.35511 -10.27841 -10.17342 -9.63396 -9.60237 -9.26107 -8.76485 -8.59402 -8.37357 -8.05464 -5.99914 -4.09565 2.99401 3.30103 3.36919 3.41487 3.65495 4.30405 4.43470 4.61689 4.67635 4.70977 4.88406 5.10374 5.23090 5.26907 5.26923 5.38040 5.40024 5.55409 5.57552 5.63888 5.72068 5.80192 5.88422 5.90058 5.96733 6.06518 6.14383 6.26649 6.36761 6.40904 6.53690 6.73216 6.84562 6.84983 6.96771 7.06179 7.15290 7.33940 7.43905 7.58469 7.72129 8.03552 8.15042 8.40896 8.49207 8.90330 9.09947 9.56025 11.01563 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035946 B = 0.003743 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.751021 B = 7479.255194 C = 7800.055807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 H 0.073 0.927 4 C -0.114 4.114 5 C -0.135 4.135 6 C 0.111 3.889 7 N -0.630 5.630 8 C 0.702 3.298 9 O -0.599 6.599 10 N -0.734 5.734 11 C 0.149 3.851 12 C 0.056 3.944 13 C -0.128 4.128 14 C -0.129 4.129 15 C -0.504 4.504 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.160 3.840 24 H 0.099 0.901 25 C -0.164 4.164 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.393 0.607 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.004 0.996 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.004 0.996 44 H 0.259 0.741 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.917 -2.567 10.764 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.173 4.173 6 C -0.013 4.013 7 N -0.368 5.368 8 C 0.403 3.597 9 O -0.478 6.478 10 N -0.390 5.390 11 C 0.026 3.974 12 C 0.055 3.945 13 C -0.186 4.186 14 C -0.186 4.186 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.135 4.135 18 N -0.525 5.525 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C 0.055 3.945 24 H 0.117 0.883 25 C -0.222 4.222 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.230 0.770 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.023 0.977 39 H 0.103 0.897 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.023 0.977 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.042 -2.205 10.084 19.076 hybrid contribution 0.896 0.041 -0.306 0.947 sum -15.147 -2.164 9.779 18.158 Atomic orbital electron populations 1.21864 0.94659 1.02052 1.01829 1.21501 0.95672 1.00017 0.94943 0.90865 1.21592 0.95230 1.00861 0.97417 1.21990 0.96146 1.01550 0.97623 1.21656 0.97947 0.96948 0.84752 1.47332 1.05890 1.65325 1.18292 1.15987 0.81942 0.79416 0.82314 1.90856 1.73660 1.47941 1.35391 1.45685 1.04902 1.66880 1.21573 1.21574 0.91183 0.98884 0.85727 1.18365 0.88183 0.92862 0.95097 1.21808 1.03040 0.98168 0.95607 1.21809 1.02755 0.97468 0.96594 1.20992 0.91766 1.40767 1.00758 0.92414 1.24878 0.97825 0.94867 0.95963 1.69812 1.10976 1.43923 1.27819 0.86568 0.79907 0.78302 0.83077 1.20729 1.21303 1.19895 1.20939 0.78450 0.96299 0.98765 0.88312 1.22225 1.00780 0.97004 1.02189 0.92167 0.92645 0.92431 0.91954 0.91577 0.91405 0.90871 0.91595 0.90322 0.77003 0.93101 0.92967 0.97722 0.89653 0.95451 0.95464 0.89646 0.97709 0.93061 0.92314 0.91416 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.71 37.16 0.32 -0.84 16 2 C -0.10 -1.02 2.65 -90.50 -0.24 -1.26 16 3 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 4 C -0.11 -0.98 4.96 -26.69 -0.13 -1.11 16 5 C -0.13 -1.27 6.10 -26.39 -0.16 -1.44 16 6 C 0.11 1.27 6.00 -3.49 -0.02 1.25 16 7 N -0.63 -9.11 2.68 -170.64 -0.46 -9.57 16 8 C 0.70 13.30 8.29 -86.92 -0.72 12.58 16 9 O -0.60 -13.56 15.77 5.29 0.08 -13.48 16 10 N -0.73 -13.93 4.87 -65.23 -0.32 -14.25 16 11 C 0.15 3.31 4.51 -4.04 -0.02 3.29 16 12 C 0.06 1.31 0.50 -155.65 -0.08 1.24 16 13 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 14 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 15 C -0.50 -13.38 8.01 -34.44 -0.28 -13.66 16 16 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 17 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 18 N -0.89 -23.73 9.35 55.43 0.52 -23.22 16 19 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 23 C 0.16 1.99 2.81 -67.60 -0.19 1.80 16 24 H 0.10 1.47 6.99 -51.93 -0.36 1.11 16 25 C -0.16 -1.69 8.50 37.16 0.32 -1.37 16 26 H 0.06 0.43 6.37 -51.93 -0.33 0.10 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.53 6.49 -51.93 -0.34 0.19 16 31 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 34 H 0.08 0.94 5.64 -51.92 -0.29 0.65 16 35 H 0.39 6.76 3.65 -40.82 -0.15 6.61 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.22 8.14 -51.94 -0.42 0.80 16 38 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 39 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.03 0.62 8.14 -51.94 -0.42 0.19 16 42 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 43 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 44 H 0.26 6.70 8.31 -40.82 -0.34 6.37 16 45 H 0.06 0.54 5.71 -51.93 -0.30 0.25 16 46 H 0.07 0.58 6.40 -51.93 -0.33 0.24 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 346.09 15.07 5.22 5.22 Total: -1.00 -29.15 346.09 -8.69 -37.84 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -8.03 Total: 4.73 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -0.69 Total: -3.14 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.26 Total: -47.04 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.08 Total: -13.48 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.15 -8.69 -37.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335591125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.820 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds