Wall clock time and date at job start Tue Mar 31 2020 06:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.49511 * 2 1 4 4 C 1.53045 * 109.49570 * 239.93935 * 2 1 3 5 5 C 1.53039 * 109.53612 * 178.67945 * 4 2 1 6 6 C 1.53192 * 109.31010 * 61.36744 * 5 4 2 7 7 N 1.46921 * 108.77665 * 305.35810 * 6 5 4 8 8 C 1.34774 * 120.63687 * 233.58578 * 7 6 5 9 9 O 1.21588 * 120.00367 * 185.58606 * 8 7 6 10 10 N 1.34782 * 119.99703 * 5.59115 * 8 7 6 11 11 C 1.46496 * 119.99825 * 185.40993 * 10 8 7 12 12 C 1.53002 * 109.46763 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.47286 * 60.00073 * 12 11 10 14 14 C 1.53002 * 109.47269 * 299.99696 * 12 11 10 15 15 C 1.50700 * 109.47142 * 180.02562 * 12 11 10 16 16 H 1.07998 * 119.99846 * 358.02462 * 15 12 11 17 17 C 1.37875 * 120.00151 * 178.02527 * 15 12 11 18 18 N 1.31513 * 119.99858 * 167.73826 * 17 15 12 19 19 Si 1.86797 * 120.00074 * 347.74144 * 17 15 12 20 20 H 1.48500 * 109.47054 * 274.46144 * 19 17 15 21 21 H 1.48503 * 109.47117 * 34.46438 * 19 17 15 22 22 H 1.48505 * 109.47241 * 154.46051 * 19 17 15 23 23 C 1.46932 * 118.73630 * 53.86395 * 7 6 5 24 24 H 1.09001 * 109.58568 * 186.34885 * 23 7 6 25 25 C 1.53009 * 109.58408 * 65.92441 * 23 7 6 26 26 H 1.09002 * 109.46888 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46692 * 300.05998 * 1 2 3 28 28 H 1.08993 * 109.47631 * 60.06315 * 1 2 3 29 29 H 1.08997 * 109.45776 * 58.66325 * 4 2 1 30 30 H 1.08998 * 109.46172 * 298.70170 * 4 2 1 31 31 H 1.08998 * 109.49972 * 301.41605 * 5 4 2 32 32 H 1.08997 * 109.52087 * 181.33333 * 5 4 2 33 33 H 1.09004 * 109.58610 * 185.57272 * 6 5 4 34 34 H 1.09000 * 109.58716 * 65.15097 * 6 5 4 35 35 H 0.97002 * 120.00023 * 5.40460 * 10 8 7 36 36 H 1.09002 * 109.47152 * 60.00164 * 11 10 8 37 37 H 1.08993 * 109.47238 * 299.99263 * 11 10 8 38 38 H 1.09001 * 109.47482 * 171.55283 * 13 12 11 39 39 H 1.08999 * 109.47244 * 291.54718 * 13 12 11 40 40 H 1.09003 * 109.47138 * 51.55128 * 13 12 11 41 41 H 1.08994 * 109.47259 * 300.00363 * 14 12 11 42 42 H 1.09008 * 109.47048 * 60.00335 * 14 12 11 43 43 H 1.09002 * 109.46874 * 179.97438 * 14 12 11 44 44 H 0.97002 * 120.00250 * 180.02562 * 18 17 15 45 45 H 1.09004 * 109.47052 * 60.00472 * 25 23 7 46 46 H 1.09000 * 109.46770 * 179.97438 * 25 23 7 47 47 H 1.08995 * 109.46966 * 300.00069 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2487 5 6 3.5708 -0.6945 -1.2663 6 6 4.1052 -1.4266 -0.0314 7 7 3.5047 -0.8295 1.1692 8 6 4.2812 -0.3871 2.1780 9 8 3.7717 0.0113 3.2077 10 7 5.6225 -0.3863 2.0455 11 6 6.4705 -0.0183 3.1820 12 6 7.9412 -0.0989 2.7680 13 6 8.1978 0.8642 1.6072 14 6 8.2696 -1.5270 2.3279 15 6 8.8137 0.2790 3.9372 16 1 8.3637 0.5804 4.8715 17 6 10.1864 0.2399 3.8140 18 7 10.9452 0.7920 4.7355 19 14 10.9684 -0.5969 2.3384 20 1 11.1052 -2.0507 2.6088 21 1 10.1114 -0.3942 1.1427 22 1 12.3103 -0.0111 2.0907 23 6 2.0411 -0.7293 1.2517 24 1 1.7631 -0.1670 2.1431 25 6 1.4339 -2.1322 1.3165 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5148 0.8895 28 1 -0.3634 0.5128 -0.8905 29 1 1.6581 -0.2237 -2.1390 30 1 1.6967 -1.7568 -1.2360 31 1 3.9158 0.3393 -1.2541 32 1 3.9338 -1.1885 -2.1676 33 1 5.1896 -1.3246 0.0131 34 1 3.8375 -2.4817 -0.0877 35 1 6.0262 -0.6293 1.1977 36 1 6.2880 -0.7048 4.0088 37 1 6.2363 0.9989 3.4957 38 1 9.2686 0.9193 1.4108 39 1 7.6831 0.5047 0.7162 40 1 7.8247 1.8547 1.8677 41 1 8.0868 -2.2132 3.1548 42 1 7.6386 -1.8009 1.4823 43 1 9.3173 -1.5843 2.0325 44 1 11.9109 0.7649 4.6487 45 1 1.8117 -2.6513 2.1974 46 1 0.3483 -2.0557 1.3781 47 1 1.7090 -2.6889 0.4207 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335591126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:04 Heat of formation + Delta-G solvation = -23.941677 kcal Electronic energy + Delta-G solvation = -23911.794735 eV Core-core repulsion = 20708.922431 eV Total energy + Delta-G solvation = -3202.872304 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.50234 -38.27621 -36.60361 -34.19637 -32.97871 -32.47344 -31.37539 -28.90303 -26.56800 -26.39187 -25.88907 -24.89985 -23.64464 -22.40441 -20.34607 -19.30759 -18.57244 -17.84740 -16.21546 -15.99372 -15.70444 -15.21181 -15.06043 -14.54079 -14.27658 -14.01525 -13.72406 -13.41343 -13.03198 -12.99246 -12.83712 -12.75720 -12.50419 -12.26139 -12.20914 -12.05678 -11.78933 -11.73203 -11.32225 -11.16394 -10.84740 -10.80840 -10.39138 -10.35722 -10.27250 -10.14675 -10.04457 -9.69473 -9.09983 -8.70395 -8.66378 -8.47975 -8.20103 -6.12792 -4.10691 2.88556 3.24251 3.30923 3.38899 3.54633 4.19169 4.36370 4.51635 4.60588 4.62577 4.80013 5.02496 5.16479 5.18104 5.19748 5.29967 5.33926 5.48994 5.50548 5.56641 5.64251 5.72208 5.77299 5.83353 5.85144 5.89740 6.00647 6.05947 6.08745 6.10274 6.29684 6.35824 6.45058 6.55025 6.62182 6.69741 6.72747 6.85788 7.02755 7.21416 7.27817 7.45278 7.74204 8.31035 8.48649 8.91997 8.97853 9.50569 11.00395 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032747 B = 0.004099 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.830055 B = 6829.153281 C = 7205.300521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 H 0.073 0.927 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.111 3.889 7 N -0.630 5.630 8 C 0.703 3.297 9 O -0.594 6.594 10 N -0.739 5.739 11 C 0.159 3.841 12 C 0.028 3.972 13 C -0.142 4.142 14 C -0.145 4.145 15 C -0.511 4.511 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.893 5.893 19 Si 0.885 3.115 20 H -0.286 1.286 21 H -0.248 1.248 22 H -0.305 1.305 23 C 0.160 3.840 24 H 0.099 0.901 25 C -0.163 4.163 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.391 0.609 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.019 0.981 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.027 0.973 43 H 0.040 0.960 44 H 0.264 0.736 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.628 -5.391 -14.889 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.174 4.174 6 C -0.013 4.013 7 N -0.368 5.368 8 C 0.405 3.595 9 O -0.473 6.473 10 N -0.396 5.396 11 C 0.036 3.964 12 C 0.027 3.973 13 C -0.199 4.199 14 C -0.202 4.202 15 C -0.549 4.549 16 H 0.095 0.905 17 C -0.128 4.128 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.214 1.214 21 H -0.174 1.174 22 H -0.234 1.234 23 C 0.056 3.944 24 H 0.117 0.883 25 C -0.221 4.221 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.228 0.772 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.766 -5.052 -14.004 23.179 hybrid contribution 0.918 -0.652 -1.191 1.638 sum -16.848 -5.703 -15.195 23.394 Atomic orbital electron populations 1.21865 0.94599 1.02095 1.01883 1.21596 0.95753 0.99943 0.94895 0.90831 1.21593 0.95138 1.00916 0.97471 1.21933 0.96286 1.01591 0.97637 1.21570 0.97816 0.97123 0.84767 1.47347 1.05962 1.65271 1.18233 1.15946 0.81843 0.78652 0.83072 1.90881 1.73427 1.54542 1.28446 1.45676 1.04073 1.73199 1.16649 1.21367 0.88946 0.99885 0.86167 1.18734 0.91582 0.91532 0.95481 1.22306 1.01220 0.99833 0.96538 1.22327 0.99143 0.99480 0.99224 1.20730 0.90338 1.46005 0.97796 0.90490 1.24976 0.97173 0.94606 0.96038 1.69938 1.04963 1.42643 1.35425 0.87310 0.77099 0.79145 0.84651 1.21420 1.17379 1.23412 1.21045 0.78278 0.96401 0.98663 0.88292 1.22202 1.00830 0.96887 1.02177 0.92151 0.92381 0.92618 0.91904 0.91549 0.91375 0.90857 0.90471 0.91536 0.77212 0.92327 0.92071 0.92470 0.96158 0.93369 0.92760 0.95404 0.94138 0.92582 0.92300 0.91403 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.72 37.16 0.32 -0.77 16 2 C -0.10 -0.95 2.67 -90.28 -0.24 -1.19 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.11 -0.89 4.96 -26.69 -0.13 -1.03 16 5 C -0.14 -1.16 6.08 -26.61 -0.16 -1.32 16 6 C 0.11 1.15 6.01 -3.71 -0.02 1.12 16 7 N -0.63 -8.45 2.68 -170.64 -0.46 -8.91 16 8 C 0.70 12.49 8.29 -86.92 -0.72 11.77 16 9 O -0.59 -12.87 15.79 5.29 0.08 -12.79 16 10 N -0.74 -12.88 4.89 -65.23 -0.32 -13.20 16 11 C 0.16 3.32 4.50 -4.04 -0.02 3.30 16 12 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 13 C -0.14 -2.92 7.54 37.15 0.28 -2.64 16 14 C -0.14 -2.96 7.54 37.16 0.28 -2.68 16 15 C -0.51 -13.85 8.62 -34.44 -0.30 -14.15 16 16 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 17 C 0.07 2.08 5.35 -17.82 -0.10 1.99 16 18 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 19 Si 0.89 21.12 22.77 -169.99 -3.87 17.25 16 20 H -0.29 -6.81 7.09 56.52 0.40 -6.41 16 21 H -0.25 -5.36 4.59 56.52 0.26 -5.10 16 22 H -0.31 -7.46 7.11 56.52 0.40 -7.06 16 23 C 0.16 1.87 2.80 -67.37 -0.19 1.68 16 24 H 0.10 1.40 7.04 -51.93 -0.37 1.03 16 25 C -0.16 -1.57 8.51 37.16 0.32 -1.26 16 26 H 0.06 0.40 6.39 -51.93 -0.33 0.07 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.48 6.49 -51.93 -0.34 0.15 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.81 5.58 -51.93 -0.29 0.52 16 34 H 0.07 0.61 7.48 -51.93 -0.39 0.22 16 35 H 0.39 5.97 3.75 -40.82 -0.15 5.82 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.06 1.25 4.20 -51.93 -0.22 1.03 16 39 H 0.02 0.35 7.10 -51.93 -0.37 -0.02 16 40 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.03 0.47 6.86 -51.92 -0.36 0.11 16 43 H 0.04 0.87 2.27 -51.93 -0.12 0.75 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.54 6.43 -51.93 -0.33 0.21 16 47 H 0.06 0.50 5.71 -51.93 -0.30 0.20 16 LS Contribution 336.12 15.07 5.07 5.07 Total: -1.00 -31.38 336.12 -7.38 -38.77 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -7.90 Total: 4.52 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -0.75 Total: -4.62 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.00 Total: -48.19 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.08 Total: -12.79 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -3.87 Total: 17.25 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.38 -7.38 -38.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335591126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.824 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds