Wall clock time and date at job start Tue Mar 31 2020 06:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.88608 * 2 1 4 4 C 1.54906 * 111.00517 * 123.88331 * 2 1 3 5 5 N 1.47420 * 104.83387 * 155.12277 * 4 2 1 6 6 C 1.34777 * 125.64845 * 155.83524 * 5 4 2 7 7 O 1.21593 * 119.99923 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00128 * 0.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27942 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 C 1.53010 * 109.47146 * 299.99645 * 10 9 8 12 12 C 1.53000 * 109.47166 * 59.99736 * 10 9 8 13 13 C 1.50697 * 109.47491 * 179.97438 * 10 9 8 14 14 H 1.08002 * 119.99965 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00490 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99545 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 120.00173 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47199 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47080 * 119.99932 * 17 15 13 20 20 H 1.48498 * 109.47127 * 239.99826 * 17 15 13 21 21 C 1.47017 * 108.70178 * 336.09262 * 5 4 2 22 22 C 1.53006 * 109.88058 * 120.25131 * 21 5 4 23 23 C 1.53005 * 109.88801 * 241.41605 * 21 5 4 24 24 C 1.54321 * 107.27693 * 0.71000 * 21 5 4 25 25 H 1.09005 * 109.47042 * 297.57425 * 1 2 3 26 26 H 1.09005 * 109.47389 * 57.57150 * 1 2 3 27 27 H 1.09000 * 109.47278 * 177.57261 * 1 2 3 28 28 H 1.08997 * 110.36848 * 36.27516 * 4 2 1 29 29 H 1.09007 * 110.45981 * 274.00808 * 4 2 1 30 30 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 31 31 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 32 32 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 33 33 H 1.09003 * 109.46863 * 59.99870 * 11 10 9 34 34 H 1.09001 * 109.47172 * 179.97438 * 11 10 9 35 35 H 1.09000 * 109.46753 * 300.00454 * 11 10 9 36 36 H 1.08990 * 109.47258 * 60.00092 * 12 10 9 37 37 H 1.09001 * 109.46739 * 180.02562 * 12 10 9 38 38 H 1.08999 * 109.47407 * 299.99599 * 12 10 9 39 39 H 0.97004 * 119.99855 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.46906 * 61.45569 * 22 21 5 41 41 H 1.09003 * 109.46751 * 181.45486 * 22 21 5 42 42 H 1.08997 * 109.47157 * 301.45362 * 22 21 5 43 43 H 1.08996 * 109.46696 * 58.54746 * 23 21 5 44 44 H 1.08996 * 109.47203 * 178.54338 * 23 21 5 45 45 H 1.09001 * 109.46880 * 298.55320 * 23 21 5 46 46 H 1.09002 * 110.92177 * 264.11001 * 24 21 5 47 47 H 1.08998 * 110.59231 * 140.78370 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 1.2005 5 7 3.4275 -1.2420 0.7741 6 6 4.4483 -1.5586 1.5952 7 8 5.5167 -1.9066 1.1306 8 7 4.2849 -1.4894 2.9312 9 6 5.3964 -1.8277 3.8236 10 6 4.9516 -1.6611 5.2780 11 6 4.5276 -0.2108 5.5187 12 6 3.7701 -2.5914 5.5597 13 6 6.0947 -2.0096 6.1960 14 1 7.0435 -2.3194 5.7834 15 6 5.9295 -1.9330 7.5627 16 7 4.7743 -1.5553 8.0651 17 14 7.3462 -2.3657 8.7005 18 1 8.5288 -2.7569 7.8920 19 1 7.6871 -1.1870 9.5370 20 1 6.9493 -3.4967 9.5773 21 6 3.4700 -1.2680 -0.6952 22 6 4.5556 -0.3160 -1.2013 23 6 3.7528 -2.6905 -1.1826 24 6 2.0869 -0.8078 -1.2020 25 1 -0.3633 0.4757 0.9110 26 1 -0.3634 0.5511 -0.8674 27 1 -0.3634 -1.0267 -0.0435 28 1 1.4522 -1.6702 1.4026 29 1 2.1552 -0.1730 2.0851 30 1 3.4326 -1.2115 3.3018 31 1 5.6985 -2.8609 3.6521 32 1 6.2381 -1.1650 3.6229 33 1 3.7006 0.0409 4.8547 34 1 4.2103 -0.0922 6.5547 35 1 5.3693 0.4519 5.3179 36 1 4.0721 -3.6245 5.3882 37 1 3.4530 -2.4723 6.5957 38 1 2.9430 -2.3397 4.8958 39 1 4.6580 -1.5010 9.0266 40 1 5.5268 -0.6418 -0.8290 41 1 4.5639 -0.3211 -2.2913 42 1 4.3494 0.6929 -0.8443 43 1 2.9783 -3.3621 -0.8122 44 1 3.7571 -2.7071 -2.2724 45 1 4.7242 -3.0158 -0.8102 46 1 1.4480 -1.6634 -1.4207 47 1 2.1929 -0.1699 -2.0794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335591791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:21 Heat of formation + Delta-G solvation = -45.256366 kcal Electronic energy + Delta-G solvation = -23819.339112 eV Core-core repulsion = 20615.542534 eV Total energy + Delta-G solvation = -3203.796578 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.42615 -38.07143 -36.20035 -33.76006 -33.11815 -32.08048 -30.43468 -27.26940 -27.11848 -25.72047 -25.69452 -25.42594 -24.61647 -21.39998 -20.51343 -19.03279 -18.60072 -17.31537 -16.37018 -15.78746 -15.13810 -14.75824 -14.68973 -14.05467 -13.84274 -13.77838 -13.53773 -13.22593 -12.90465 -12.84350 -12.63002 -12.36087 -12.20760 -12.13364 -11.80571 -11.64894 -11.42214 -11.26331 -11.16953 -10.94337 -10.84463 -10.77380 -10.63397 -10.48894 -10.35127 -10.17194 -9.59716 -9.53553 -9.25813 -8.75085 -8.57267 -8.37631 -8.05107 -5.99738 -4.09323 2.97856 3.28927 3.37459 3.42753 3.69652 4.30301 4.32590 4.42838 4.62096 4.74562 5.01022 5.14816 5.17260 5.27166 5.27863 5.37867 5.48737 5.62174 5.64740 5.70774 5.71005 5.78607 5.84441 5.95721 6.02386 6.12578 6.19894 6.34802 6.40485 6.43404 6.54495 6.67037 6.85380 6.85967 6.98348 7.06639 7.17126 7.40032 7.52410 7.58965 7.72608 8.03905 8.15684 8.41629 8.53027 8.90933 9.14220 9.56314 11.01771 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028340 B = 0.004014 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.774049 B = 6973.237734 C = 7558.879384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.084 0.916 4 C 0.104 3.896 5 N -0.635 5.635 6 C 0.717 3.283 7 O -0.594 6.594 8 N -0.733 5.733 9 C 0.151 3.849 10 C 0.055 3.945 11 C -0.129 4.129 12 C -0.129 4.129 13 C -0.503 4.503 14 H 0.058 0.942 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.180 3.820 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.119 4.119 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.392 0.608 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.004 0.996 34 H 0.085 0.915 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.085 0.915 38 H 0.004 0.996 39 H 0.259 0.741 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.879 3.193 -16.184 19.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.102 0.898 4 C -0.020 4.020 5 N -0.374 5.374 6 C 0.419 3.581 7 O -0.473 6.473 8 N -0.387 5.387 9 C 0.028 3.972 10 C 0.055 3.945 11 C -0.186 4.186 12 C -0.186 4.186 13 C -0.542 4.542 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C 0.095 3.905 22 C -0.214 4.214 23 C -0.214 4.214 24 C -0.157 4.157 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.227 0.773 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.023 0.977 34 H 0.103 0.897 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.103 0.897 38 H 0.023 0.977 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.062 2.920 -16.242 18.827 hybrid contribution 0.277 -0.064 0.924 0.966 sum -8.786 2.856 -15.319 17.889 Atomic orbital electron populations 1.21703 0.93847 1.02184 1.02109 1.22315 0.95958 0.99400 0.94626 0.89810 1.22294 0.84183 0.97983 0.97546 1.47703 1.11554 1.72452 1.05675 1.15584 0.82668 0.78479 0.81337 1.90844 1.25503 1.55299 1.75633 1.45551 1.17488 1.72059 1.03628 1.21564 0.86805 0.99023 0.89812 1.18369 0.94834 0.92952 0.88380 1.21810 0.96981 0.97227 1.02611 1.21805 0.96293 0.97888 1.02643 1.21028 0.97394 1.45115 0.90642 0.92369 1.24878 0.95694 0.94920 0.98052 1.69820 1.22948 1.47776 1.11977 0.86519 0.82670 0.77979 0.80746 1.19747 1.21095 1.21087 1.20710 0.94992 0.95657 0.79144 1.22162 1.00332 0.98770 1.00175 1.22162 1.03392 0.95543 1.00347 1.22841 0.94969 1.00063 0.97864 0.92166 0.92265 0.92325 0.91700 0.91038 0.77258 0.93027 0.93050 0.97698 0.89657 0.95479 0.95475 0.89682 0.97658 0.93121 0.90626 0.92331 0.92861 0.92852 0.92274 0.90786 0.90477 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.30 37.16 0.35 -0.64 16 2 C -0.10 -0.93 3.63 -88.47 -0.32 -1.25 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.10 1.19 6.05 -2.53 -0.02 1.18 16 5 N -0.63 -9.32 2.82 -161.45 -0.46 -9.78 16 6 C 0.72 13.56 8.06 -86.92 -0.70 12.86 16 7 O -0.59 -13.09 13.95 5.28 0.07 -13.01 16 8 N -0.73 -14.00 4.92 -65.23 -0.32 -14.32 16 9 C 0.15 3.35 4.50 -4.04 -0.02 3.33 16 10 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 11 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 12 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 13 C -0.50 -13.36 8.01 -34.44 -0.28 -13.64 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 16 N -0.89 -23.78 9.35 55.43 0.52 -23.26 16 17 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.18 2.23 0.83 -130.84 -0.11 2.12 16 22 C -0.16 -1.97 8.38 37.16 0.31 -1.65 16 23 C -0.16 -1.96 8.42 37.16 0.31 -1.65 16 24 C -0.12 -1.07 5.49 -24.90 -0.14 -1.21 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.40 8.11 -51.93 -0.42 -0.02 16 28 H 0.06 0.71 8.04 -51.93 -0.42 0.30 16 29 H 0.07 0.83 7.29 -51.92 -0.38 0.45 16 30 H 0.39 6.89 4.64 -40.82 -0.19 6.70 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 34 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 38 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 39 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 40 H 0.07 1.19 6.75 -51.93 -0.35 0.84 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.07 1.16 6.87 -51.93 -0.36 0.80 16 46 H 0.08 0.63 7.73 -51.93 -0.40 0.23 16 47 H 0.08 0.61 7.83 -51.93 -0.41 0.20 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -28.98 355.10 -8.49 -37.47 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.46 Total: 4.64 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -0.18 Total: -2.97 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.26 Total: -47.35 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.07 Total: -13.01 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.98 -8.49 -37.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335591791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.789 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds