Wall clock time and date at job start Tue Mar 31 2020 06:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.88841 * 2 1 4 4 C 1.54913 * 111.00538 * 236.12217 * 2 1 3 5 5 N 1.47415 * 104.82991 * 204.91528 * 4 2 1 6 6 C 1.34783 * 125.64792 * 204.08895 * 5 4 2 7 7 O 1.21590 * 119.99935 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99768 * 0.02806 * 6 5 4 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46840 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47233 * 299.99500 * 10 9 8 12 12 C 1.52996 * 109.47328 * 59.99969 * 10 9 8 13 13 C 1.50706 * 109.46735 * 180.02562 * 10 9 8 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46999 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46979 * 120.00025 * 17 15 13 20 20 H 1.48498 * 109.46942 * 239.99938 * 17 15 13 21 21 C 1.47019 * 108.70833 * 24.35680 * 5 4 2 22 22 C 1.52995 * 109.88838 * 118.12882 * 21 5 4 23 23 C 1.53005 * 109.88390 * 239.29716 * 21 5 4 24 24 C 1.54336 * 107.26231 * 358.58215 * 21 5 4 25 25 H 1.08999 * 109.47121 * 182.42362 * 1 2 3 26 26 H 1.09005 * 109.46981 * 302.42710 * 1 2 3 27 27 H 1.08999 * 109.47392 * 62.42299 * 1 2 3 28 28 H 1.08994 * 110.36475 * 86.07262 * 4 2 1 29 29 H 1.09001 * 110.36440 * 323.75290 * 4 2 1 30 30 H 0.97000 * 119.99708 * 359.97438 * 8 6 5 31 31 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 32 32 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 33 33 H 1.09000 * 109.46986 * 60.00203 * 11 10 9 34 34 H 1.08993 * 109.47662 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.47075 * 300.00932 * 11 10 9 36 36 H 1.08992 * 109.47554 * 59.99639 * 12 10 9 37 37 H 1.09004 * 109.47108 * 179.97438 * 12 10 9 38 38 H 1.09000 * 109.46870 * 299.99783 * 12 10 9 39 39 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.47274 * 61.45396 * 22 21 5 41 41 H 1.08994 * 109.47781 * 181.45701 * 22 21 5 42 42 H 1.09004 * 109.46755 * 301.45870 * 22 21 5 43 43 H 1.08994 * 109.46987 * 58.53956 * 23 21 5 44 44 H 1.08998 * 109.46942 * 178.54396 * 23 21 5 45 45 H 1.09004 * 109.46810 * 298.53878 * 23 21 5 46 46 H 1.09002 * 110.85094 * 219.67448 * 24 21 5 47 47 H 1.09003 * 110.51542 * 96.45845 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8061 -1.2007 5 7 3.4271 -1.2427 -0.7738 6 6 4.4477 -1.5609 -1.5947 7 8 5.5155 -1.9103 -1.1298 8 7 4.2846 -1.4918 -2.9308 9 6 5.3937 -1.8382 -3.8230 10 6 4.9479 -1.6758 -5.2775 11 6 3.7623 -2.6026 -5.5541 12 6 4.5293 -0.2249 -5.5238 13 6 6.0886 -2.0328 -6.1954 14 1 7.0368 -2.3439 -5.7825 15 6 5.9217 -1.9621 -7.5622 16 7 4.7669 -1.5837 -8.0650 17 14 7.3359 -2.4039 -8.6999 18 1 8.5181 -2.7955 -7.8910 19 1 6.9349 -3.5380 -9.5707 20 1 7.6787 -1.2300 -9.5423 21 6 3.4658 -1.2796 0.6954 22 6 3.7386 -2.7073 1.1731 23 6 4.5559 -0.3380 1.2111 24 6 2.0862 -0.8083 1.2019 25 1 -0.3633 -1.0267 0.0435 26 1 -0.3633 0.5511 0.8675 27 1 -0.3634 0.4757 -0.9109 28 1 2.1559 -0.1712 -2.0837 29 1 1.4519 -1.6698 -1.4031 30 1 3.4326 -1.2133 -3.3015 31 1 5.6922 -2.8717 -3.6472 32 1 6.2381 -1.1776 -3.6262 33 1 2.9371 -2.3449 -4.8903 34 1 3.4450 -2.4873 -6.5904 35 1 4.0605 -3.6362 -5.3786 36 1 5.3738 0.4353 -5.3267 37 1 4.2121 -0.1091 -6.5602 38 1 3.7041 0.0328 -4.8599 39 1 4.6494 -1.5344 -9.0265 40 1 4.7090 -3.0358 0.8009 41 1 3.7402 -2.7318 2.2627 42 1 2.9609 -3.3714 0.7958 43 1 4.3568 0.6747 0.8608 44 1 4.5615 -0.3510 2.3010 45 1 5.5261 -0.6671 0.8389 46 1 2.1922 -0.1707 2.0795 47 1 1.4468 -1.6637 1.4203 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335591792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:23 Heat of formation + Delta-G solvation = -45.305056 kcal Electronic energy + Delta-G solvation = -23818.798029 eV Core-core repulsion = 20614.999340 eV Total energy + Delta-G solvation = -3203.798690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.42410 -38.06994 -36.20042 -33.76174 -33.11951 -32.07996 -30.43480 -27.27301 -27.11299 -25.72039 -25.69496 -25.42587 -24.61641 -21.40248 -20.51191 -19.03380 -18.59998 -17.31552 -16.36577 -15.78809 -15.13876 -14.75912 -14.68905 -14.05569 -13.84675 -13.77139 -13.53941 -13.22681 -12.90588 -12.84405 -12.63126 -12.35972 -12.20915 -12.13292 -11.80480 -11.65012 -11.42135 -11.26263 -11.17004 -10.94099 -10.84439 -10.76729 -10.63392 -10.49528 -10.35146 -10.17212 -9.59733 -9.53549 -9.25777 -8.75069 -8.57318 -8.37652 -8.05119 -5.99708 -4.09335 2.97852 3.28924 3.37449 3.42743 3.69647 4.30365 4.32456 4.42821 4.62495 4.74153 5.01531 5.14732 5.17191 5.27167 5.27977 5.37855 5.48764 5.62004 5.64688 5.70673 5.71091 5.78702 5.84425 5.95843 6.02398 6.12543 6.19949 6.34784 6.40477 6.43390 6.54502 6.67110 6.85340 6.85991 6.98368 7.06630 7.17133 7.40059 7.52395 7.58919 7.72612 8.03968 8.15674 8.41626 8.53019 8.90938 9.14207 9.56312 11.01786 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028340 B = 0.004014 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.764786 B = 6973.804417 C = 7559.488561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.084 0.916 4 C 0.104 3.896 5 N -0.635 5.635 6 C 0.717 3.283 7 O -0.594 6.594 8 N -0.733 5.733 9 C 0.151 3.849 10 C 0.055 3.945 11 C -0.129 4.129 12 C -0.129 4.129 13 C -0.503 4.503 14 H 0.058 0.942 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.180 3.820 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.119 4.119 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.392 0.608 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.004 0.996 34 H 0.085 0.915 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.085 0.915 38 H 0.004 0.996 39 H 0.259 0.741 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.874 3.227 16.178 19.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.102 0.898 4 C -0.020 4.020 5 N -0.374 5.374 6 C 0.419 3.581 7 O -0.473 6.473 8 N -0.387 5.387 9 C 0.028 3.972 10 C 0.055 3.945 11 C -0.186 4.186 12 C -0.186 4.186 13 C -0.542 4.542 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C 0.095 3.905 22 C -0.214 4.214 23 C -0.214 4.214 24 C -0.157 4.157 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.227 0.773 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.023 0.977 34 H 0.103 0.897 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.103 0.897 38 H 0.023 0.977 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.055 2.960 16.237 18.825 hybrid contribution 0.274 -0.078 -0.923 0.966 sum -8.781 2.882 15.315 17.887 Atomic orbital electron populations 1.21703 0.93847 1.02183 1.02109 1.22313 0.95952 0.99399 0.94619 0.89802 1.22295 0.84188 0.97966 0.97561 1.47705 1.11629 1.72369 1.05682 1.15586 0.82682 0.78461 0.81339 1.90843 1.25547 1.55267 1.75616 1.45551 1.17626 1.71926 1.03623 1.21567 0.86871 0.98953 0.89815 1.18370 0.94823 0.92966 0.88378 1.21807 0.96298 0.97879 1.02651 1.21805 0.97005 0.97204 1.02610 1.21030 0.97518 1.45001 0.90634 0.92365 1.24878 0.95685 0.94924 0.98049 1.69815 1.22950 1.47792 1.11965 0.86522 0.82660 0.77997 0.80750 1.19745 1.21092 1.21088 1.20712 0.95024 0.95619 0.79150 1.22158 1.03388 0.95491 1.00397 1.22166 1.00318 0.98842 1.00124 1.22843 0.95024 1.00003 0.97877 0.92327 0.92265 0.92165 0.91015 0.91704 0.77257 0.93032 0.93047 0.97660 0.89663 0.95486 0.95481 0.89670 0.97681 0.93118 0.90786 0.92262 0.92853 0.92860 0.92343 0.90627 0.90175 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.29 37.16 0.35 -0.64 16 2 C -0.10 -0.92 3.64 -88.47 -0.32 -1.25 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.10 1.19 6.04 -2.53 -0.02 1.18 16 5 N -0.63 -9.32 2.82 -161.44 -0.45 -9.78 16 6 C 0.72 13.56 8.06 -86.91 -0.70 12.86 16 7 O -0.59 -13.09 13.95 5.29 0.07 -13.01 16 8 N -0.73 -13.99 4.92 -65.22 -0.32 -14.31 16 9 C 0.15 3.35 4.50 -4.04 -0.02 3.33 16 10 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 11 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 12 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 13 C -0.50 -13.37 8.01 -34.44 -0.28 -13.64 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 16 N -0.89 -23.78 9.35 55.43 0.52 -23.26 16 17 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.18 2.23 0.83 -130.84 -0.11 2.12 16 22 C -0.16 -1.96 8.42 37.16 0.31 -1.65 16 23 C -0.16 -1.97 8.37 37.16 0.31 -1.66 16 24 C -0.12 -1.07 5.49 -24.89 -0.14 -1.21 16 25 H 0.06 0.40 8.11 -51.93 -0.42 -0.02 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.83 7.30 -51.93 -0.38 0.46 16 29 H 0.06 0.71 8.04 -51.93 -0.42 0.29 16 30 H 0.39 6.89 4.64 -40.82 -0.19 6.70 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 34 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 38 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 39 H 0.26 6.68 8.31 -40.82 -0.34 6.35 16 40 H 0.07 1.16 6.89 -51.93 -0.36 0.80 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 1.19 6.73 -51.93 -0.35 0.84 16 46 H 0.08 0.61 7.83 -51.93 -0.41 0.20 16 47 H 0.08 0.63 7.71 -51.93 -0.40 0.23 16 LS Contribution 355.09 15.07 5.35 5.35 Total: -1.00 -28.98 355.09 -8.49 -37.47 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -8.46 Total: 4.64 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -0.18 Total: -2.98 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.26 Total: -47.35 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.07 Total: -13.01 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.98 -8.49 -37.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335591792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.839 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds