Wall clock time and date at job start Tue Mar 31 2020 06:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.50976 * 2 1 4 4 C 1.53238 * 109.49133 * 120.06145 * 2 1 3 5 5 N 1.47076 * 108.52213 * 66.13275 * 4 2 1 6 6 C 1.34777 * 120.88192 * 231.18618 * 5 4 2 7 7 O 1.21282 * 119.99942 * 354.87195 * 6 5 4 8 8 C 1.50700 * 119.99858 * 174.87085 * 6 5 4 9 9 C 1.52995 * 109.47231 * 181.20671 * 8 6 5 10 10 C 1.52996 * 109.47444 * 301.20532 * 8 6 5 11 11 C 1.53005 * 109.47023 * 61.20873 * 8 6 5 12 12 C 1.47078 * 118.23514 * 51.45689 * 5 4 2 13 13 C 1.53696 * 108.27762 * 308.48266 * 12 5 4 14 14 H 1.08995 * 109.67165 * 294.06532 * 13 12 5 15 15 C 1.53000 * 109.42502 * 173.94909 * 13 12 5 16 16 N 1.46891 * 109.49607 * 239.93040 * 2 1 3 17 17 C 1.46906 * 111.00025 * 67.28998 * 16 2 1 18 18 C 1.50701 * 109.46950 * 54.48454 * 17 16 2 19 19 H 1.07998 * 120.00013 * 4.07016 * 18 17 16 20 20 C 1.37877 * 120.00008 * 184.07838 * 18 17 16 21 21 N 1.31519 * 119.99889 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00114 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47470 * 59.99462 * 22 20 18 24 24 H 1.48502 * 109.47175 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46989 * 299.99619 * 22 20 18 26 26 H 1.08999 * 109.47467 * 299.93893 * 1 2 3 27 27 H 1.08999 * 109.46815 * 59.94137 * 1 2 3 28 28 H 1.09003 * 109.46496 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.63006 * 306.42363 * 4 2 1 30 30 H 1.09001 * 109.78632 * 185.93939 * 4 2 1 31 31 H 1.09002 * 109.47401 * 59.99465 * 9 8 6 32 32 H 1.08996 * 109.47590 * 180.02562 * 9 8 6 33 33 H 1.09012 * 109.47210 * 300.00183 * 9 8 6 34 34 H 1.09008 * 109.46771 * 47.67010 * 10 8 6 35 35 H 1.08997 * 109.47122 * 167.66985 * 10 8 6 36 36 H 1.08997 * 109.47435 * 287.67809 * 10 8 6 37 37 H 1.08994 * 109.47167 * 65.48445 * 11 8 6 38 38 H 1.09004 * 109.46979 * 185.48908 * 11 8 6 39 39 H 1.09004 * 109.46741 * 305.48041 * 11 8 6 40 40 H 1.09005 * 109.63141 * 68.25486 * 12 5 4 41 41 H 1.09004 * 109.63143 * 188.83002 * 12 5 4 42 42 H 1.09001 * 109.47068 * 286.95074 * 15 13 12 43 43 H 1.09004 * 109.46730 * 46.94356 * 15 13 12 44 44 H 1.08996 * 109.47719 * 166.95232 * 15 13 12 45 45 H 1.09002 * 109.47080 * 174.47976 * 17 16 2 46 46 H 1.08991 * 109.47109 * 294.47886 * 17 16 2 47 47 H 0.96994 * 120.00062 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0414 -0.7236 1.2503 5 7 1.6653 -2.1423 1.1556 6 6 1.0287 -2.7585 2.1712 7 8 0.8411 -2.1704 3.2152 8 6 0.5499 -4.1783 2.0096 9 6 -0.1608 -4.6256 3.2885 10 6 -0.4228 -4.2576 0.8313 11 6 1.7473 -5.0933 1.7449 12 6 2.0078 -2.8724 -0.0745 13 6 1.4926 -2.0626 -1.2749 14 1 0.4031 -2.0339 -1.2577 15 6 1.9655 -2.7202 -2.5729 16 7 2.0203 -0.6938 -1.1983 17 6 1.6969 0.0639 -2.4147 18 6 2.2271 1.4687 -2.2872 19 1 2.8085 1.7500 -1.4216 20 6 1.9700 2.3950 -3.2756 21 7 1.2624 2.0523 -4.3299 22 14 2.6266 4.1365 -3.1173 23 1 4.1089 4.1012 -3.0356 24 1 2.2155 4.9303 -4.3031 25 1 2.0779 4.7626 -1.8875 26 1 -0.3634 0.5129 0.8905 27 1 -0.3633 0.5147 -0.8895 28 1 -0.3632 -1.0277 -0.0005 29 1 1.5889 -0.2834 2.1389 30 1 3.1262 -0.6355 1.3099 31 1 -1.0138 -3.9737 3.4772 32 1 -0.5067 -5.6526 3.1718 33 1 0.5323 -4.5691 4.1281 34 1 0.0041 -3.7397 -0.0277 35 1 -0.5988 -5.3023 0.5751 36 1 -1.3665 -3.7870 1.1069 37 1 2.3913 -5.1124 2.6240 38 1 1.3936 -6.1020 1.5316 39 1 2.3100 -4.7173 0.8903 40 1 3.0897 -2.9867 -0.1432 41 1 1.5332 -3.8536 -0.0622 42 1 3.0327 -2.5411 -2.7031 43 1 1.7804 -3.7934 -2.5249 44 1 1.4203 -2.2948 -3.4154 45 1 2.1550 -0.4205 -3.2770 46 1 0.6155 0.0942 -2.5470 47 1 1.0818 2.7038 -5.0254 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336121598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:25 Heat of formation + Delta-G solvation = -19.695049 kcal Electronic energy + Delta-G solvation = -24679.425158 eV Core-core repulsion = 21476.737001 eV Total energy + Delta-G solvation = -3202.688157 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73530 -38.31416 -35.91355 -34.45643 -32.86255 -32.41570 -28.98292 -27.68280 -27.51321 -26.56094 -26.34160 -25.63880 -22.82742 -21.79963 -21.06087 -19.05098 -17.99671 -16.53671 -16.46668 -15.83150 -15.33180 -15.30598 -14.76449 -14.28628 -14.10429 -13.90590 -13.72442 -13.43233 -12.92395 -12.56874 -12.43241 -12.27706 -12.18330 -12.08144 -11.88420 -11.77823 -11.68583 -11.54258 -11.23564 -11.08704 -11.05336 -10.83319 -10.78232 -10.75350 -10.52676 -10.32487 -10.12190 -9.82472 -9.36937 -9.08709 -8.50052 -8.31260 -7.22015 -6.07323 -4.08589 2.80264 3.20527 3.30804 3.35288 3.37971 4.38261 4.40827 4.66371 4.71978 4.78437 5.07351 5.15147 5.27141 5.30283 5.39317 5.41773 5.49074 5.56561 5.59340 5.67422 5.68536 5.75027 5.77341 5.85319 5.90251 5.91902 6.00472 6.07123 6.12450 6.13105 6.18953 6.26214 6.41401 6.45487 6.57692 6.68106 6.75063 6.92487 7.31445 7.40194 7.64797 7.73714 8.02798 8.15227 8.36848 8.51522 8.98547 9.55934 11.03496 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029066 B = 0.004799 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.085853 B = 5832.625163 C = 6282.689351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.075 3.925 3 H 0.108 0.892 4 C 0.118 3.882 5 N -0.601 5.601 6 C 0.522 3.478 7 O -0.550 6.550 8 C -0.086 4.086 9 C -0.124 4.124 10 C -0.158 4.158 11 C -0.158 4.158 12 C 0.096 3.904 13 C 0.060 3.940 14 H 0.042 0.958 15 C -0.142 4.142 16 N -0.525 5.525 17 C 0.192 3.808 18 C -0.512 4.512 19 H 0.063 0.937 20 C 0.059 3.941 21 N -0.897 5.897 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.034 0.966 46 H -0.004 1.004 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.106 -14.384 8.552 16.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.035 4.035 3 H 0.125 0.875 4 C -0.004 4.004 5 N -0.333 5.333 6 C 0.310 3.690 7 O -0.428 6.428 8 C -0.089 4.089 9 C -0.182 4.182 10 C -0.215 4.215 11 C -0.215 4.215 12 C -0.027 4.027 13 C -0.049 4.049 14 H 0.060 0.940 15 C -0.200 4.200 16 N -0.250 5.250 17 C 0.067 3.933 18 C -0.551 4.551 19 H 0.081 0.919 20 C -0.143 4.143 21 N -0.536 5.536 22 Si 0.723 3.277 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.052 0.948 46 H 0.014 0.986 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.759 -14.017 8.960 16.654 hybrid contribution -0.585 1.126 -0.235 1.291 sum -1.344 -12.891 8.725 15.624 Atomic orbital electron populations 1.22305 0.98223 1.00756 1.02047 1.21973 0.92637 0.99498 0.89344 0.87455 1.21889 0.99974 0.79601 0.98940 1.48105 1.57240 1.11737 1.16254 1.20509 0.77229 0.88203 0.83056 1.90646 1.57521 1.67213 1.27413 1.20745 0.97179 0.92689 0.98304 1.21637 1.00586 1.00465 0.95471 1.22233 0.99022 1.02869 0.97352 1.22274 0.96961 0.99177 1.03058 1.22665 1.00988 0.95695 0.83304 1.22050 0.97148 0.91691 0.94057 0.94049 1.21809 1.02787 0.98568 0.96853 1.62371 1.57941 1.00349 1.04343 1.19751 0.94786 0.92495 0.86231 1.21138 1.33252 0.94815 1.05890 0.91932 1.24950 0.95220 0.98846 0.95271 1.69940 1.39235 1.35029 1.09391 0.86612 0.79426 0.84278 0.77420 1.20168 1.21381 1.20266 0.93433 0.91462 0.93687 0.89635 0.91306 0.92096 0.92274 0.92095 0.90531 0.91436 0.92045 0.92111 0.91467 0.90537 0.90849 0.87996 0.91505 0.93202 0.91843 0.94795 0.98643 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 8.39 37.16 0.31 -2.95 16 2 C 0.07 1.42 2.67 -67.59 -0.18 1.24 16 3 H 0.11 2.25 5.99 -51.93 -0.31 1.94 16 4 C 0.12 1.99 5.97 -3.60 -0.02 1.97 16 5 N -0.60 -9.13 2.46 -172.18 -0.42 -9.55 16 6 C 0.52 7.99 6.49 -10.99 -0.07 7.91 16 7 O -0.55 -10.24 15.46 5.56 0.09 -10.15 16 8 C -0.09 -0.98 0.75 -155.66 -0.12 -1.10 16 9 C -0.12 -1.35 7.73 37.16 0.29 -1.06 16 10 C -0.16 -1.64 8.09 37.16 0.30 -1.34 16 11 C -0.16 -1.47 8.10 37.16 0.30 -1.17 16 12 C 0.10 1.29 3.36 -3.37 -0.01 1.28 16 13 C 0.06 0.98 1.98 -67.35 -0.13 0.84 16 14 H 0.04 0.71 5.52 -51.93 -0.29 0.43 16 15 C -0.14 -2.12 8.26 37.16 0.31 -1.81 16 16 N -0.53 -10.42 4.50 -219.57 -0.99 -11.41 16 17 C 0.19 4.66 3.88 -4.97 -0.02 4.64 16 18 C -0.51 -13.64 8.28 -34.44 -0.29 -13.92 16 19 H 0.06 1.65 6.49 -52.49 -0.34 1.31 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 22 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.42 6.72 -51.93 -0.35 1.07 16 28 H 0.04 0.80 5.92 -51.93 -0.31 0.49 16 29 H 0.09 1.48 7.10 -51.93 -0.37 1.11 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.70 8.09 -51.92 -0.42 0.28 16 34 H 0.08 0.86 4.17 -51.92 -0.22 0.64 16 35 H 0.07 0.55 8.04 -51.93 -0.42 0.13 16 36 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 39 H 0.08 0.71 4.62 -51.93 -0.24 0.47 16 40 H 0.07 0.98 8.13 -51.93 -0.42 0.55 16 41 H 0.10 1.12 2.84 -51.93 -0.15 0.97 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 44 H 0.06 1.06 7.19 -51.93 -0.37 0.69 16 45 H 0.03 0.88 6.58 -51.93 -0.34 0.54 16 46 H 0.00 -0.11 6.78 -51.93 -0.35 -0.46 16 47 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 341.54 15.07 5.15 5.15 Total: -1.00 -29.88 341.54 -7.72 -37.60 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.82 Total: 1.24 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 0.57 Total: -3.95 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.68 Total: -46.00 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.88 -7.72 -37.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336121598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.904 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds