Wall clock time and date at job start Tue Mar 31 2020 06:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.49456 * 2 1 4 4 C 1.53247 * 109.49174 * 239.94787 * 2 1 3 5 5 N 1.47087 * 108.51744 * 186.24120 * 4 2 1 6 6 C 1.34775 * 120.85566 * 231.19101 * 5 4 2 7 7 O 1.21290 * 119.99840 * 185.18244 * 6 5 4 8 8 C 1.50697 * 120.00337 * 5.17849 * 6 5 4 9 9 C 1.53001 * 109.47175 * 178.72476 * 8 6 5 10 10 C 1.52997 * 109.47356 * 298.72776 * 8 6 5 11 11 C 1.52998 * 109.46917 * 58.72601 * 8 6 5 12 12 C 1.47071 * 118.26095 * 51.13673 * 5 4 2 13 13 C 1.53245 * 108.52607 * 308.83796 * 12 5 4 14 14 H 1.08998 * 109.51120 * 293.85978 * 13 12 5 15 15 C 1.53001 * 109.49624 * 173.78830 * 13 12 5 16 16 N 1.46899 * 109.49260 * 120.05661 * 2 1 3 17 17 C 1.46893 * 110.99820 * 307.21145 * 16 2 1 18 18 C 1.50702 * 109.47402 * 294.18640 * 17 16 2 19 19 H 1.07997 * 119.99838 * 5.02322 * 18 17 16 20 20 C 1.37876 * 120.00138 * 185.02326 * 18 17 16 21 21 N 1.31513 * 120.00308 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00011 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46993 * 89.99899 * 22 20 18 24 24 H 1.48493 * 109.47458 * 209.99954 * 22 20 18 25 25 H 1.48506 * 109.47211 * 330.00294 * 22 20 18 26 26 H 1.08999 * 109.46864 * 302.41455 * 1 2 3 27 27 H 1.09004 * 109.47214 * 182.41553 * 1 2 3 28 28 H 1.09004 * 109.47461 * 62.41458 * 1 2 3 29 29 H 1.08998 * 109.62887 * 305.92141 * 4 2 1 30 30 H 1.08998 * 109.62822 * 66.49994 * 4 2 1 31 31 H 1.08996 * 109.47364 * 60.00132 * 9 8 6 32 32 H 1.09003 * 109.47473 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47193 * 300.00042 * 9 8 6 34 34 H 1.08992 * 109.47170 * 62.80302 * 10 8 6 35 35 H 1.09003 * 109.47171 * 182.80906 * 10 8 6 36 36 H 1.09003 * 109.46866 * 302.80548 * 10 8 6 37 37 H 1.09005 * 109.47500 * 75.38795 * 11 8 6 38 38 H 1.08999 * 109.47305 * 195.38324 * 11 8 6 39 39 H 1.08999 * 109.47087 * 315.38739 * 11 8 6 40 40 H 1.08999 * 109.63265 * 189.12922 * 12 5 4 41 41 H 1.09005 * 109.62876 * 68.54280 * 12 5 4 42 42 H 1.09003 * 109.46759 * 293.20787 * 15 13 12 43 43 H 1.08995 * 109.46617 * 53.20806 * 15 13 12 44 44 H 1.09000 * 109.46720 * 173.21202 * 15 13 12 45 45 H 1.09002 * 109.47666 * 54.18905 * 17 16 2 46 46 H 1.09010 * 109.47289 * 174.18846 * 17 16 2 47 47 H 0.96991 * 120.00661 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2504 5 7 3.5042 -0.8436 -1.1552 6 6 4.2977 -0.4490 -2.1707 7 8 5.4940 -0.6410 -2.1153 8 6 3.6986 0.2305 -3.3750 9 6 4.8112 0.6010 -4.3577 10 6 2.7107 -0.7181 -4.0570 11 6 2.9655 1.4986 -2.9329 12 6 4.0781 -1.4042 0.0773 13 6 3.4866 -0.6534 1.2752 14 1 3.8234 0.3830 1.2577 15 6 3.9485 -1.3186 2.5734 16 7 2.0202 -0.6936 1.1986 17 6 1.4140 -0.1354 2.4146 18 6 1.8794 1.2857 2.6012 19 1 2.4921 1.7567 1.8468 20 6 1.5232 1.9846 3.7351 21 7 0.7776 1.4109 4.6541 22 14 2.1008 3.7459 3.9667 23 1 1.1018 4.6755 3.3807 24 1 2.2516 4.0309 5.4162 25 1 3.4080 3.9316 3.2870 26 1 -0.3633 0.5509 0.8676 27 1 -0.3634 -1.0268 0.0433 28 1 -0.3634 0.4759 -0.9109 29 1 1.5957 -1.7166 -1.3068 30 1 1.7776 -0.1498 -2.1389 31 1 5.3335 -0.3024 -4.6726 32 1 4.3780 1.0929 -5.2286 33 1 5.5150 1.2768 -3.8717 34 1 1.8918 -0.9425 -3.3738 35 1 2.3148 -0.2455 -4.9560 36 1 3.2219 -1.6420 -4.3274 37 1 3.6928 2.2768 -2.7013 38 1 2.3123 1.8394 -3.7361 39 1 2.3692 1.2831 -2.0463 40 1 5.1610 -1.2806 0.0663 41 1 3.8282 -2.4628 0.1491 42 1 3.5103 -2.3139 2.6475 43 1 5.0354 -1.3991 2.5735 44 1 3.6286 -0.7165 3.4238 45 1 0.3282 -0.1526 2.3203 46 1 1.7133 -0.7319 3.2766 47 1 0.5273 1.9024 5.4519 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336121599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:28 Heat of formation + Delta-G solvation = -23.211753 kcal Electronic energy + Delta-G solvation = -24737.529996 eV Core-core repulsion = 21534.689344 eV Total energy + Delta-G solvation = -3202.840652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.60146 -38.19191 -35.87405 -34.51652 -33.01430 -32.41766 -28.83487 -27.68641 -27.42593 -26.71433 -26.14816 -25.38936 -22.94322 -21.37670 -20.62116 -19.24794 -18.43345 -16.47192 -16.20233 -16.07590 -15.37737 -15.08805 -14.91181 -14.30392 -14.17735 -13.95951 -13.63691 -13.00835 -12.77312 -12.53054 -12.38902 -12.24056 -12.14997 -11.94381 -11.76959 -11.69435 -11.54320 -11.48822 -11.21909 -11.02732 -10.98559 -10.81781 -10.77625 -10.66034 -10.35923 -10.18896 -9.93547 -9.87968 -9.64314 -9.25107 -8.44978 -8.30354 -7.22932 -6.07204 -4.16055 2.83334 3.23157 3.24074 3.31153 3.34344 4.36731 4.45794 4.72024 4.75335 4.84089 5.13811 5.22070 5.27957 5.34657 5.46421 5.50071 5.53917 5.64057 5.70158 5.74371 5.78964 5.80838 5.82943 5.92843 5.98426 6.03861 6.07898 6.16589 6.18317 6.23044 6.26492 6.30017 6.48383 6.68182 6.74848 6.84397 6.91423 7.00541 7.23803 7.51661 7.67083 7.87469 8.01058 8.23834 8.25028 8.39719 8.94024 9.51055 10.97383 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.005542 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.911515 B = 5050.769639 C = 5223.937406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 H 0.048 0.952 4 C 0.092 3.908 5 N -0.603 5.603 6 C 0.522 3.478 7 O -0.552 6.552 8 C -0.086 4.086 9 C -0.124 4.124 10 C -0.155 4.155 11 C -0.159 4.159 12 C 0.119 3.881 13 C 0.080 3.920 14 H 0.048 0.952 15 C -0.137 4.137 16 N -0.531 5.531 17 C 0.181 3.819 18 C -0.545 4.545 19 H 0.053 0.947 20 C 0.068 3.932 21 N -0.889 5.889 22 Si 0.884 3.116 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.077 0.923 45 H 0.035 0.965 46 H 0.040 0.960 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.249 -3.600 -14.491 14.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.036 4.036 3 H 0.066 0.934 4 C -0.030 4.030 5 N -0.335 5.335 6 C 0.310 3.690 7 O -0.430 6.430 8 C -0.089 4.089 9 C -0.181 4.181 10 C -0.212 4.212 11 C -0.216 4.216 12 C -0.004 4.004 13 C -0.030 4.030 14 H 0.066 0.934 15 C -0.195 4.195 16 N -0.257 5.257 17 C 0.056 3.944 18 C -0.585 4.585 19 H 0.071 0.929 20 C -0.135 4.135 21 N -0.528 5.528 22 Si 0.712 3.288 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.200 1.200 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.053 0.947 46 H 0.058 0.942 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.664 -4.182 -14.311 15.002 hybrid contribution 0.467 1.982 0.427 2.080 sum 2.130 -2.200 -13.883 14.217 Atomic orbital electron populations 1.21812 0.94222 1.01970 1.01958 1.21756 0.95464 0.96153 0.90273 0.93413 1.22660 0.79253 1.01497 0.99595 1.48117 1.07144 1.61948 1.16278 1.20542 0.86519 0.78086 0.83826 1.90643 1.15302 1.56811 1.80214 1.20746 0.97462 0.96562 0.94127 1.21639 0.96991 1.01987 0.97528 1.22255 0.98924 0.98976 1.01094 1.22233 1.00803 0.95875 1.02699 1.21898 0.98499 0.97403 0.82590 1.21690 0.89602 0.98223 0.93489 0.93365 1.21735 0.99027 1.00918 0.97837 1.62573 1.04801 1.54456 1.03836 1.19899 0.95149 0.92852 0.86469 1.21682 1.32755 0.99252 1.04769 0.92885 1.24908 0.94915 0.97817 0.95854 1.69925 1.36499 1.36962 1.09399 0.86728 0.79188 0.85539 0.77388 1.20676 1.21130 1.20047 0.90416 0.92583 0.93515 0.91166 0.87979 0.92129 0.92256 0.92090 0.90535 0.91499 0.92208 0.91995 0.91422 0.90353 0.89775 0.91517 0.92735 0.93650 0.90446 0.94733 0.94191 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.64 37.16 0.32 -1.95 16 2 C 0.07 1.28 1.98 -67.59 -0.13 1.14 16 3 H 0.05 0.95 6.32 -51.93 -0.33 0.62 16 4 C 0.09 1.32 3.50 -3.59 -0.01 1.30 16 5 N -0.60 -9.65 2.99 -172.45 -0.52 -10.16 16 6 C 0.52 8.44 6.49 -10.99 -0.07 8.36 16 7 O -0.55 -10.66 15.46 5.55 0.09 -10.58 16 8 C -0.09 -1.06 0.75 -155.66 -0.12 -1.17 16 9 C -0.12 -1.43 7.71 37.16 0.29 -1.15 16 10 C -0.16 -1.54 8.07 37.16 0.30 -1.24 16 11 C -0.16 -1.85 8.09 37.16 0.30 -1.55 16 12 C 0.12 2.02 5.86 -3.60 -0.02 2.00 16 13 C 0.08 1.53 2.13 -67.59 -0.14 1.38 16 14 H 0.05 1.07 6.74 -51.93 -0.35 0.72 16 15 C -0.14 -2.52 8.46 37.16 0.31 -2.20 16 16 N -0.53 -10.52 4.52 -219.84 -0.99 -11.51 16 17 C 0.18 4.31 4.17 -4.98 -0.02 4.29 16 18 C -0.55 -14.13 7.49 -34.44 -0.26 -14.39 16 19 H 0.05 1.41 5.88 -52.49 -0.31 1.10 16 20 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 21 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 22 Si 0.88 20.98 29.54 -169.99 -5.02 15.96 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 H 0.08 1.48 6.35 -51.93 -0.33 1.15 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.10 1.22 2.74 -51.93 -0.14 1.08 16 31 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 34 H 0.08 0.73 4.70 -51.93 -0.24 0.49 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 38 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 39 H 0.08 1.01 4.16 -51.93 -0.22 0.79 16 40 H 0.08 1.48 7.10 -51.93 -0.37 1.12 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.64 6.58 -51.93 -0.34 1.30 16 45 H 0.03 0.87 5.91 -51.93 -0.31 0.56 16 46 H 0.04 1.03 6.46 -51.92 -0.34 0.70 16 47 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 342.74 15.07 5.16 5.16 Total: -1.00 -29.24 342.74 -7.79 -37.03 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.89 Total: 1.86 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 0.65 Total: -3.44 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -0.77 Total: -46.00 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.24 -7.79 -37.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336121599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.815 kcal (2) G-P(sol) polarization free energy of solvation -29.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds