Wall clock time and date at job start Tue Mar 31 2020 06:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.50728 * 2 1 4 4 C 1.53231 * 109.49165 * 239.93476 * 2 1 3 5 5 N 1.47077 * 108.52187 * 293.86605 * 4 2 1 6 6 C 1.34777 * 120.88676 * 128.79432 * 5 4 2 7 7 O 1.21275 * 120.00353 * 185.09684 * 6 5 4 8 8 C 1.50706 * 119.99276 * 5.09697 * 6 5 4 9 9 C 1.53004 * 109.46762 * 171.80784 * 8 6 5 10 10 C 1.53005 * 109.47140 * 291.80651 * 8 6 5 11 11 C 1.53000 * 109.47157 * 51.81254 * 8 6 5 12 12 C 1.47082 * 118.23736 * 308.82088 * 5 4 2 13 13 C 1.53239 * 108.52352 * 51.17982 * 12 5 4 14 14 H 1.09001 * 109.48893 * 66.13511 * 13 12 5 15 15 C 1.52997 * 109.49452 * 186.21386 * 13 12 5 16 16 N 1.46896 * 109.49262 * 120.06206 * 2 1 3 17 17 C 1.46902 * 111.00624 * 292.70878 * 16 2 1 18 18 C 1.50697 * 109.46722 * 291.22859 * 17 16 2 19 19 H 1.08004 * 120.00446 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99804 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99895 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00024 * 179.71972 * 20 18 17 23 23 H 1.48496 * 109.46904 * 180.27423 * 22 20 18 24 24 H 1.48499 * 109.47219 * 300.27958 * 22 20 18 25 25 H 1.48499 * 109.46871 * 60.27920 * 22 20 18 26 26 H 1.09009 * 109.47117 * 299.93157 * 1 2 3 27 27 H 1.08995 * 109.47450 * 59.93094 * 1 2 3 28 28 H 1.08999 * 109.46717 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.63113 * 174.15899 * 4 2 1 30 30 H 1.08998 * 109.63314 * 53.57554 * 4 2 1 31 31 H 1.09002 * 109.46814 * 59.99924 * 9 8 6 32 32 H 1.08995 * 109.46963 * 179.97438 * 9 8 6 33 33 H 1.08996 * 109.47339 * 300.00293 * 9 8 6 34 34 H 1.08998 * 109.46744 * 63.74543 * 10 8 6 35 35 H 1.08997 * 109.46683 * 183.74535 * 10 8 6 36 36 H 1.08999 * 109.47111 * 303.74494 * 10 8 6 37 37 H 1.08994 * 109.47374 * 67.39872 * 11 8 6 38 38 H 1.09000 * 109.46940 * 187.39971 * 11 8 6 39 39 H 1.09003 * 109.46885 * 307.39695 * 11 8 6 40 40 H 1.09000 * 109.62715 * 291.46947 * 12 5 4 41 41 H 1.08999 * 109.79463 * 170.98949 * 12 5 4 42 42 H 1.08999 * 109.47459 * 188.02187 * 15 13 12 43 43 H 1.09002 * 109.46961 * 308.01634 * 15 13 12 44 44 H 1.08994 * 109.47442 * 68.01446 * 15 13 12 45 45 H 1.08992 * 109.47103 * 171.22435 * 17 16 2 46 46 H 1.08997 * 109.46462 * 51.22197 * 17 16 2 47 47 H 0.97000 * 119.99967 * 359.72348 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7237 -1.2501 5 7 1.6653 -2.1424 -1.1553 6 6 1.0283 -2.7587 -2.1707 7 8 0.6436 -3.9014 -2.0407 8 6 0.7942 -2.0276 -3.4676 9 6 0.2440 -3.0026 -4.5105 10 6 -0.2143 -0.8992 -3.2421 11 6 2.1152 -1.4388 -3.9668 12 6 2.0023 -2.8708 0.0772 13 6 1.4925 -2.0625 1.2752 14 1 0.4030 -2.0339 1.2574 15 6 1.9654 -2.7200 2.5732 16 7 2.0202 -0.6937 1.1985 17 6 1.6968 0.0641 2.4148 18 6 2.5106 1.3320 2.4478 19 1 3.1995 1.5527 1.6458 20 6 2.3758 2.2104 3.5020 21 7 1.5374 1.9414 4.4789 22 14 3.3903 3.7783 3.5469 23 1 3.0668 4.5420 4.7787 24 1 4.8347 3.4336 3.5430 25 1 3.0756 4.6057 2.3546 26 1 -0.3634 0.5128 0.8907 27 1 -0.3634 0.5149 -0.8893 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1263 -0.6355 -1.3063 30 1 1.5889 -0.2836 -2.1388 31 1 -0.6971 -3.4221 -4.1548 32 1 0.0743 -2.4738 -5.4483 33 1 0.9624 -3.8064 -4.6710 34 1 0.2055 -0.1699 -2.5494 35 1 -0.4339 -0.4131 -4.1926 36 1 -1.1327 -1.3110 -2.8238 37 1 2.7885 -2.2471 -4.2521 38 1 1.9257 -0.8019 -4.8308 39 1 2.5726 -0.8480 -3.1732 40 1 3.0835 -2.9889 0.1487 41 1 1.5267 -3.8515 0.0682 42 1 1.4881 -2.2317 3.4228 43 1 1.6975 -3.7765 2.5639 44 1 3.0475 -2.6204 2.6577 45 1 1.9294 -0.5400 3.2917 46 1 0.6357 0.3132 2.4161 47 1 1.0109 1.1271 4.4558 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336121600.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:31 Heat of formation + Delta-G solvation = -20.024541 kcal Electronic energy + Delta-G solvation = -24677.678181 eV Core-core repulsion = 21474.975737 eV Total energy + Delta-G solvation = -3202.702444 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.81885 -38.42757 -35.97616 -34.61131 -32.97801 -32.60136 -28.94760 -27.84398 -27.56406 -26.46508 -26.40236 -25.36953 -22.81074 -21.70507 -21.48922 -19.08607 -18.27884 -16.76735 -16.57328 -15.87843 -15.40581 -15.27905 -14.57999 -14.55101 -14.27638 -14.01932 -13.72642 -13.47676 -13.00260 -12.74506 -12.47598 -12.43428 -12.24483 -11.97043 -11.89649 -11.81747 -11.74270 -11.40192 -11.32158 -11.26209 -11.22843 -11.04073 -10.75114 -10.70121 -10.53509 -10.16645 -10.12868 -9.99372 -9.38315 -8.75935 -8.41645 -8.35487 -7.33669 -6.38835 -4.07753 2.73682 3.12373 3.41445 3.43874 3.62189 4.36793 4.45907 4.60780 4.66665 4.74693 5.01341 5.14606 5.20504 5.33070 5.37088 5.41391 5.44065 5.46351 5.54293 5.58107 5.63281 5.67184 5.72515 5.78679 5.81239 5.87913 5.93700 5.95789 6.01395 6.06605 6.13780 6.16529 6.32086 6.34057 6.47230 6.49709 6.66978 6.73249 7.03492 7.09653 7.56032 7.76431 7.95282 8.28103 8.29441 8.54461 8.84339 9.62312 10.99884 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024275 B = 0.005001 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.191625 B = 5597.937707 C = 6204.702461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.074 3.926 3 H 0.104 0.896 4 C 0.095 3.905 5 N -0.602 5.602 6 C 0.524 3.476 7 O -0.552 6.552 8 C -0.085 4.085 9 C -0.124 4.124 10 C -0.156 4.156 11 C -0.164 4.164 12 C 0.123 3.877 13 C 0.062 3.938 14 H 0.039 0.961 15 C -0.141 4.141 16 N -0.517 5.517 17 C 0.176 3.824 18 C -0.586 4.586 19 H 0.055 0.945 20 C 0.015 3.985 21 N -0.914 5.914 22 Si 1.070 2.930 23 H -0.284 1.284 24 H -0.288 1.288 25 H -0.289 1.289 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.065 0.935 45 H 0.029 0.971 46 H -0.015 1.015 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.753 -5.860 -15.274 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.036 4.036 3 H 0.122 0.878 4 C -0.028 4.028 5 N -0.334 5.334 6 C 0.312 3.688 7 O -0.430 6.430 8 C -0.088 4.088 9 C -0.182 4.182 10 C -0.212 4.212 11 C -0.220 4.220 12 C 0.000 4.000 13 C -0.048 4.048 14 H 0.056 0.944 15 C -0.199 4.199 16 N -0.241 5.241 17 C 0.051 3.949 18 C -0.625 4.625 19 H 0.074 0.926 20 C -0.189 4.189 21 N -0.551 5.551 22 Si 0.898 3.102 23 H -0.209 1.209 24 H -0.214 1.214 25 H -0.215 1.215 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.047 0.953 46 H 0.003 0.997 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.130 -5.143 -14.326 15.222 hybrid contribution -1.189 -1.278 -0.730 1.892 sum -1.320 -6.421 -15.056 16.421 Atomic orbital electron populations 1.22455 0.98344 1.01271 1.02092 1.21970 0.92428 0.99283 0.89927 0.87834 1.22640 1.00659 0.80155 0.99320 1.48093 1.57463 1.11691 1.16119 1.20555 0.76815 0.86521 0.84948 1.90641 1.51175 1.18647 1.82525 1.20739 0.97686 0.96941 0.93439 1.21636 1.01711 0.98073 0.96760 1.22254 0.98612 0.97459 1.02916 1.22349 0.95506 1.01635 1.02560 1.21762 1.00444 0.95454 0.82335 1.21932 0.97061 0.91269 0.94511 0.94365 1.21817 1.02551 0.98919 0.96652 1.62269 1.57867 1.00286 1.03696 1.19975 0.94491 0.93491 0.86978 1.21937 1.25673 1.05053 1.09792 0.92642 1.25798 0.97802 1.02771 0.92512 1.70802 1.24057 1.27400 1.32799 0.83518 0.75500 0.75129 0.76004 1.20917 1.21420 1.21536 0.91727 0.92888 0.93120 0.90734 0.87858 0.91953 0.92194 0.92274 0.90374 0.91397 0.92091 0.92189 0.91483 0.90108 0.91111 0.89573 0.91894 0.93007 0.91573 0.95294 0.99745 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 8.00 37.16 0.30 -2.77 16 2 C 0.07 1.29 2.80 -67.59 -0.19 1.10 16 3 H 0.10 1.99 6.90 -51.93 -0.36 1.63 16 4 C 0.09 1.33 3.77 -3.61 -0.01 1.31 16 5 N -0.60 -9.04 2.46 -172.47 -0.42 -9.47 16 6 C 0.52 7.91 6.49 -10.98 -0.07 7.84 16 7 O -0.55 -10.09 15.44 5.56 0.09 -10.00 16 8 C -0.08 -0.97 0.75 -155.65 -0.12 -1.09 16 9 C -0.12 -1.33 7.80 37.16 0.29 -1.04 16 10 C -0.16 -1.61 8.21 37.16 0.31 -1.31 16 11 C -0.16 -1.57 8.08 37.16 0.30 -1.27 16 12 C 0.12 1.96 5.88 -3.60 -0.02 1.94 16 13 C 0.06 1.10 2.24 -67.59 -0.15 0.95 16 14 H 0.04 0.73 6.10 -51.93 -0.32 0.41 16 15 C -0.14 -2.37 8.47 37.16 0.31 -2.06 16 16 N -0.52 -10.35 4.39 -219.86 -0.96 -11.31 16 17 C 0.18 4.27 3.66 -4.98 -0.02 4.25 16 18 C -0.59 -15.72 8.44 -34.44 -0.29 -16.02 16 19 H 0.06 1.48 7.34 -52.48 -0.39 1.10 16 20 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 21 N -0.91 -27.07 13.65 55.43 0.76 -26.32 16 22 Si 1.07 24.52 29.90 -169.99 -5.08 19.44 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 26 H 0.06 1.26 6.43 -51.92 -0.33 0.92 16 27 H 0.05 0.75 6.55 -51.93 -0.34 0.41 16 28 H 0.05 0.87 5.92 -51.93 -0.31 0.56 16 29 H 0.07 1.04 7.86 -51.93 -0.41 0.63 16 30 H 0.10 1.20 2.64 -51.93 -0.14 1.07 16 31 H 0.06 0.73 8.01 -51.93 -0.42 0.32 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.84 3.02 -51.93 -0.16 0.68 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.80 4.14 -51.93 -0.22 0.58 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.09 1.40 7.06 -51.93 -0.37 1.03 16 42 H 0.06 1.15 6.55 -51.93 -0.34 0.81 16 43 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.03 0.75 5.53 -51.93 -0.29 0.46 16 46 H -0.02 -0.39 6.05 -51.93 -0.31 -0.70 16 47 H 0.27 7.87 7.22 -40.82 -0.29 7.58 16 LS Contribution 337.81 15.07 5.09 5.09 Total: -1.00 -30.69 337.81 -7.58 -38.27 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.58 Total: 2.16 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 0.54 Total: -7.86 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -0.63 Total: -47.10 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.08 Total: 19.44 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.69 -7.58 -38.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336121600.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.242 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds