Wall clock time and date at job start Tue Mar 31 2020 06:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.58873 * 2 1 4 4 C 1.53190 * 109.58399 * 120.28459 * 2 1 3 5 5 C 1.53039 * 109.31657 * 65.14793 * 4 2 1 6 6 H 1.09001 * 109.45980 * 301.34969 * 5 4 2 7 7 C 1.52997 * 109.46235 * 181.38400 * 5 4 2 8 8 C 1.52996 * 109.47043 * 60.00301 * 7 5 4 9 9 C 1.53004 * 109.47014 * 180.02562 * 7 5 4 10 10 C 1.52997 * 109.47409 * 300.00367 * 7 5 4 11 11 C 1.53048 * 109.53540 * 61.36685 * 5 4 2 12 12 C 1.53190 * 109.31101 * 298.63510 * 11 5 4 13 13 N 1.46924 * 109.58742 * 239.71410 * 2 1 3 14 14 C 1.34775 * 120.63319 * 113.81621 * 13 2 1 15 15 O 1.21593 * 119.99638 * 354.97656 * 14 13 2 16 16 N 1.34769 * 120.00510 * 174.97074 * 14 13 2 17 17 C 1.46504 * 120.00280 * 185.07468 * 16 14 13 18 18 C 1.50701 * 109.46848 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00363 * 0.02562 * 18 17 16 20 20 C 1.37886 * 119.99422 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00097 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99661 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47286 * 90.00323 * 22 20 18 24 24 H 1.48500 * 109.47108 * 210.00667 * 22 20 18 25 25 H 1.48507 * 109.47285 * 330.00277 * 22 20 18 26 26 H 1.08991 * 109.47059 * 300.00242 * 1 2 3 27 27 H 1.08997 * 109.47150 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46553 * 60.00001 * 1 2 3 29 29 H 1.08997 * 109.49797 * 185.10509 * 4 2 1 30 30 H 1.09005 * 109.49809 * 305.19711 * 4 2 1 31 31 H 1.09006 * 109.46928 * 60.00089 * 8 7 5 32 32 H 1.09002 * 109.47515 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47486 * 299.99911 * 8 7 5 34 34 H 1.08993 * 109.47065 * 60.00620 * 9 7 5 35 35 H 1.09005 * 109.46589 * 180.02562 * 9 7 5 36 36 H 1.08993 * 109.47127 * 300.00112 * 9 7 5 37 37 H 1.08999 * 109.47131 * 59.99753 * 10 7 5 38 38 H 1.09002 * 109.47700 * 180.02562 * 10 7 5 39 39 H 1.09003 * 109.47384 * 299.99824 * 10 7 5 40 40 H 1.09002 * 109.49722 * 58.58549 * 11 5 4 41 41 H 1.08997 * 109.49813 * 178.65249 * 11 5 4 42 42 H 1.08998 * 109.58630 * 174.42084 * 12 11 5 43 43 H 1.08994 * 109.58999 * 294.70451 * 12 11 5 44 44 H 0.97005 * 119.99871 * 5.07608 * 16 14 13 45 45 H 1.08991 * 109.46821 * 299.99874 * 17 16 14 46 46 H 1.09004 * 109.46989 * 60.00366 * 17 16 14 47 47 H 0.96998 * 120.00101 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 1.6414 -2.2026 1.1730 6 1 0.5564 -2.2800 1.1022 7 6 2.1227 -2.9255 2.4326 8 6 1.4831 -2.2831 3.6651 9 6 1.7212 -4.4001 2.3592 10 6 3.6454 -2.8164 2.5329 11 6 2.2800 -2.8466 -0.0598 12 6 1.7692 -2.1428 -1.3210 13 7 2.0226 -0.6981 -1.1953 14 6 2.6940 -0.0291 -2.1535 15 8 2.8181 1.1782 -2.0786 16 7 3.2279 -0.6981 -3.1944 17 6 4.0515 0.0115 -4.1766 18 6 4.5231 -0.9572 -5.2302 19 1 4.2377 -1.9972 -5.1742 20 6 5.3183 -0.5153 -6.2664 21 7 5.6655 0.7514 -6.3349 22 14 5.9024 -1.7158 -7.5729 23 1 4.9141 -1.7617 -8.6803 24 1 7.2173 -1.2715 -8.1009 25 1 6.0402 -3.0686 -6.9760 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 -0.8900 29 1 3.1297 -0.6488 1.2922 30 1 1.6075 -0.2757 2.1372 31 1 0.3982 -2.3609 3.5936 32 1 1.8256 -2.7983 4.5625 33 1 1.7694 -1.2326 3.7172 34 1 2.1772 -4.8575 1.4812 35 1 2.0638 -4.9150 3.2568 36 1 0.6365 -4.4782 2.2875 37 1 3.9318 -1.7660 2.5850 38 1 3.9884 -3.3318 3.4300 39 1 4.1012 -3.2741 1.6548 40 1 3.3639 -2.7475 -0.0017 41 1 2.0127 -3.9025 -0.0984 42 1 2.2944 -2.5303 -2.1939 43 1 0.6992 -2.3195 -1.4301 44 1 3.0669 -1.6496 -3.2934 45 1 3.4609 0.7990 -4.6447 46 1 4.9140 0.4525 -3.6767 47 1 6.2252 1.0622 -7.0636 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336431806.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:51 Heat of formation + Delta-G solvation = -51.817563 kcal Electronic energy + Delta-G solvation = -23673.252023 eV Core-core repulsion = 20469.170930 eV Total energy + Delta-G solvation = -3204.081093 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.42721 -38.58253 -35.95154 -34.22471 -32.76115 -31.70968 -31.13788 -28.24498 -27.48374 -27.09526 -26.81678 -24.30887 -22.89545 -22.33330 -20.53992 -18.98444 -18.59273 -17.57195 -16.05025 -15.70496 -15.45215 -14.84329 -14.73128 -14.43806 -14.21734 -14.12539 -14.03167 -13.56726 -13.17269 -12.84836 -12.75543 -12.53283 -12.11645 -12.04788 -12.00696 -11.92671 -11.85789 -11.67138 -11.38955 -11.28723 -11.03779 -10.91700 -10.85656 -10.81141 -10.38909 -10.27371 -10.16409 -9.98824 -9.33420 -9.24230 -8.69243 -8.29727 -7.65097 -6.12255 -4.18584 3.25019 3.26545 3.33029 3.36002 3.97358 4.33925 4.50905 4.54154 4.56329 4.74955 5.01637 5.04790 5.13390 5.15378 5.23721 5.24923 5.37948 5.43504 5.44677 5.51206 5.55719 5.59912 5.66311 5.69977 5.76599 5.80459 5.82582 5.89734 5.90548 5.96797 6.05036 6.11394 6.13877 6.17263 6.29313 6.33056 6.52525 6.92749 7.24349 7.57064 7.61161 7.62328 7.92671 8.07012 8.80562 8.97290 9.38531 9.53263 10.98062 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023737 B = 0.003876 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.309854 B = 7221.670303 C = 7851.825216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.155 3.845 3 H 0.097 0.903 4 C -0.126 4.126 5 C -0.074 4.074 6 H 0.072 0.928 7 C -0.064 4.064 8 C -0.143 4.143 9 C -0.143 4.143 10 C -0.146 4.146 11 C -0.133 4.133 12 C 0.113 3.887 13 N -0.632 5.632 14 C 0.698 3.302 15 O -0.601 6.601 16 N -0.731 5.731 17 C 0.267 3.733 18 C -0.541 4.541 19 H 0.061 0.939 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.903 3.097 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.385 0.615 45 H 0.024 0.976 46 H 0.023 0.977 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.770 -9.934 18.671 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 H 0.115 0.885 4 C -0.164 4.164 5 C -0.092 4.092 6 H 0.091 0.909 7 C -0.064 4.064 8 C -0.200 4.200 9 C -0.200 4.200 10 C -0.203 4.203 11 C -0.171 4.171 12 C -0.011 4.011 13 N -0.371 5.371 14 C 0.399 3.601 15 O -0.480 6.480 16 N -0.385 5.385 17 C 0.145 3.855 18 C -0.579 4.579 19 H 0.079 0.921 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.730 3.270 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.220 0.780 45 H 0.042 0.958 46 H 0.041 0.959 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.507 -8.885 18.553 22.661 hybrid contribution 0.281 -1.118 -0.839 1.426 sum -9.226 -10.003 17.713 22.337 Atomic orbital electron populations 1.22148 0.95915 1.01793 1.01960 1.20884 0.93231 0.97431 0.83409 0.88495 1.22105 1.01777 0.95113 0.97409 1.21159 1.00001 0.94528 0.93526 0.90949 1.20541 0.95732 0.95202 0.94953 1.21922 1.00320 1.00820 0.96920 1.21926 1.01079 0.95334 1.01676 1.21984 0.94758 1.02052 1.01515 1.22099 1.01512 0.99263 0.94231 1.21570 1.00279 0.81103 0.98178 1.47410 1.60348 1.08011 1.21336 1.16062 0.78567 0.85308 0.80149 1.90850 1.65856 1.12331 1.78963 1.45872 1.54146 1.12053 1.26398 1.18960 0.89093 0.92381 0.85018 1.21221 1.32460 0.95189 1.09031 0.92070 1.24941 0.95770 0.95383 0.97909 1.69980 1.35964 1.14201 1.32152 0.86426 0.78165 0.80885 0.81476 1.20493 1.21025 1.19787 0.92045 0.92513 0.92398 0.91253 0.90928 0.92842 0.93029 0.92274 0.92244 0.93016 0.92852 0.92302 0.93172 0.92266 0.91025 0.90857 0.90298 0.92037 0.78032 0.95753 0.95926 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.02 37.16 0.34 -1.50 16 2 C 0.15 2.14 3.18 -67.60 -0.22 1.92 16 3 H 0.10 1.60 7.03 -51.93 -0.37 1.23 16 4 C -0.13 -1.37 4.12 -26.61 -0.11 -1.48 16 5 C -0.07 -0.69 1.30 -90.58 -0.12 -0.80 16 6 H 0.07 0.66 6.50 -51.93 -0.34 0.32 16 7 C -0.06 -0.53 0.57 -154.51 -0.09 -0.61 16 8 C -0.14 -1.07 8.12 37.16 0.30 -0.77 16 9 C -0.14 -1.07 8.12 37.16 0.30 -0.77 16 10 C -0.15 -1.30 7.77 37.16 0.29 -1.01 16 11 C -0.13 -1.37 4.65 -26.61 -0.12 -1.49 16 12 C 0.11 1.41 6.02 -3.56 -0.02 1.39 16 13 N -0.63 -10.15 2.69 -170.68 -0.46 -10.61 16 14 C 0.70 15.13 8.30 -86.93 -0.72 14.40 16 15 O -0.60 -15.53 15.78 5.28 0.08 -15.45 16 16 N -0.73 -16.33 5.46 -66.41 -0.36 -16.70 16 17 C 0.27 7.33 5.43 -5.19 -0.03 7.30 16 18 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 19 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 20 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 22 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.58 5.73 -51.93 -0.30 0.29 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.85 6.51 -51.93 -0.34 0.52 16 30 H 0.07 0.68 6.36 -51.93 -0.33 0.35 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.45 6.40 -51.93 -0.33 0.12 16 34 H 0.06 0.45 6.40 -51.93 -0.33 0.12 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.56 6.46 -51.93 -0.34 0.23 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.56 6.46 -51.93 -0.34 0.23 16 40 H 0.07 0.84 6.51 -51.93 -0.34 0.50 16 41 H 0.07 0.64 6.36 -51.93 -0.33 0.31 16 42 H 0.08 1.02 5.59 -51.93 -0.29 0.73 16 43 H 0.06 0.69 7.50 -51.93 -0.39 0.30 16 44 H 0.38 7.48 5.80 -40.82 -0.24 7.24 16 45 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -32.29 348.22 -8.32 -40.60 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.93 Total: 3.61 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.62 Total: 2.98 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.09 Total: -53.05 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.08 Total: -15.45 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.29 -8.32 -40.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336431806.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.213 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds