Wall clock time and date at job start Tue Mar 31 2020 06:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 109.69772 * 2 1 4 4 C 1.53190 * 109.59178 * 120.35285 * 2 1 3 5 5 C 1.53039 * 109.31789 * 174.42459 * 4 2 1 6 6 H 1.08999 * 109.45857 * 58.65490 * 5 4 2 7 7 C 1.52995 * 109.46191 * 178.61396 * 5 4 2 8 8 C 1.53000 * 109.47017 * 60.00154 * 7 5 4 9 9 C 1.52999 * 109.47021 * 180.02562 * 7 5 4 10 10 C 1.53003 * 109.47124 * 300.00060 * 7 5 4 11 11 C 1.53034 * 109.53668 * 298.63836 * 5 4 2 12 12 C 1.52760 * 109.38759 * 61.23703 * 11 5 4 13 13 N 1.46925 * 109.00854 * 305.59113 * 12 11 5 14 14 C 1.34780 * 120.63002 * 233.58240 * 13 12 11 15 15 O 1.21585 * 120.00064 * 185.36392 * 14 13 12 16 16 N 1.34774 * 120.00069 * 5.09336 * 14 13 12 17 17 C 1.46501 * 120.00337 * 175.20738 * 16 14 13 18 18 C 1.50693 * 109.47255 * 179.97438 * 17 16 14 19 19 H 1.08008 * 120.00153 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00235 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99926 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00512 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46843 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47131 * 119.99514 * 22 20 18 25 25 H 1.48500 * 109.47500 * 240.00094 * 22 20 18 26 26 H 1.09009 * 109.46696 * 172.87305 * 1 2 3 27 27 H 1.09000 * 109.47463 * 292.87121 * 1 2 3 28 28 H 1.09002 * 109.47458 * 52.87569 * 1 2 3 29 29 H 1.09002 * 109.49631 * 294.37831 * 4 2 1 30 30 H 1.08997 * 109.49712 * 54.46864 * 4 2 1 31 31 H 1.09004 * 109.47162 * 60.00087 * 8 7 5 32 32 H 1.09003 * 109.47199 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47277 * 299.99935 * 8 7 5 34 34 H 1.08999 * 109.47228 * 60.00230 * 9 7 5 35 35 H 1.09003 * 109.46837 * 180.02562 * 9 7 5 36 36 H 1.09004 * 109.47333 * 300.00020 * 9 7 5 37 37 H 1.08994 * 109.46929 * 60.00198 * 10 7 5 38 38 H 1.09006 * 109.46796 * 180.02562 * 10 7 5 39 39 H 1.08999 * 109.47224 * 299.99831 * 10 7 5 40 40 H 1.09004 * 109.50134 * 181.31473 * 11 5 4 41 41 H 1.09001 * 109.49977 * 301.37897 * 11 5 4 42 42 H 1.09002 * 109.51572 * 185.70239 * 12 11 5 43 43 H 1.09004 * 109.43384 * 65.42341 * 12 11 5 44 44 H 0.97001 * 119.99712 * 355.19732 * 16 14 13 45 45 H 1.09001 * 109.46564 * 299.99438 * 17 16 14 46 46 H 1.09000 * 109.46885 * 59.99212 * 17 16 14 47 47 H 0.97001 * 120.00363 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7293 1.2454 5 6 3.5676 -0.8478 1.1701 6 1 4.0061 0.1475 1.0993 7 6 4.0874 -1.5451 2.4289 8 6 3.4714 -2.9420 2.5292 9 6 5.6110 -1.6632 2.3541 10 6 3.6996 -0.7269 3.6622 11 6 3.9570 -1.6655 -0.0634 12 6 3.4645 -0.9518 -1.3211 13 7 2.0226 -0.6995 -1.1945 14 6 1.1674 -1.1070 -2.1532 15 8 -0.0091 -0.8077 -2.0855 16 7 1.6173 -1.8415 -3.1897 17 6 0.6729 -2.3731 -4.1755 18 6 1.4257 -3.1513 -5.2236 19 1 2.5003 -3.2407 -5.1619 20 6 0.7428 -3.7493 -6.2613 21 7 -0.5658 -3.6410 -6.3362 22 14 1.6759 -4.7134 -7.5610 23 1 3.1279 -4.6854 -7.2506 24 1 1.1995 -6.1199 -7.5711 25 1 1.4423 -4.1020 -8.8939 26 1 -0.3633 -1.0198 -0.1275 27 1 -0.3634 0.3994 0.9469 28 1 -0.3634 0.6202 -0.8194 29 1 1.7660 -0.1667 2.1368 30 1 1.6031 -1.7252 1.2914 31 1 3.7477 -3.5250 1.6506 32 1 3.8414 -3.4387 3.4262 33 1 2.3860 -2.8576 2.5827 34 1 6.0495 -0.6678 2.2829 35 1 5.9812 -2.1604 3.2507 36 1 5.8876 -2.2459 1.4754 37 1 2.6143 -0.6424 3.7156 38 1 4.0704 -1.2235 4.5589 39 1 4.1385 0.2683 3.5907 40 1 5.0413 -1.7694 -0.1037 41 1 3.4989 -2.6529 -0.0050 42 1 3.6505 -1.5796 -2.1925 43 1 3.9928 -0.0047 -1.4311 44 1 2.5666 -2.0181 -3.2831 45 1 -0.0406 -3.0297 -3.6776 46 1 0.1393 -1.5488 -4.6487 47 1 -1.0463 -4.0614 -7.0665 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336431810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:54 Heat of formation + Delta-G solvation = -38.251922 kcal Electronic energy + Delta-G solvation = -23723.654153 eV Core-core repulsion = 20520.161310 eV Total energy + Delta-G solvation = -3203.492843 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.44856 -38.64475 -35.75079 -34.47286 -32.85917 -31.70094 -31.13657 -28.14068 -27.48829 -27.08944 -26.49489 -24.32330 -22.87301 -21.87134 -20.96052 -19.15347 -18.42383 -17.54901 -16.01451 -15.88857 -15.39356 -14.94679 -14.71072 -14.47224 -14.33181 -14.13753 -13.88820 -13.44562 -13.12238 -12.84062 -12.47436 -12.34340 -12.17475 -12.06354 -11.99316 -11.94748 -11.77774 -11.62684 -11.24642 -11.18748 -11.11395 -10.90018 -10.87410 -10.70234 -10.45962 -10.27088 -10.17884 -10.14764 -9.31008 -8.69354 -8.57361 -8.20934 -7.64436 -6.12762 -4.18906 3.25395 3.25940 3.33121 3.36592 3.98216 4.33643 4.50190 4.53246 4.57938 4.74661 5.01485 5.07049 5.14415 5.16533 5.23419 5.32111 5.37524 5.44945 5.45053 5.56229 5.61055 5.65741 5.72517 5.76041 5.80322 5.80907 5.86915 5.92038 5.96891 6.06733 6.07826 6.14256 6.18364 6.28106 6.41348 6.59621 6.75689 7.08852 7.24699 7.57465 7.62192 7.64001 7.92267 8.07130 8.80977 8.97919 9.39624 9.54510 10.97546 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023133 B = 0.003966 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.088190 B = 7058.429390 C = 7824.105807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.164 3.836 3 H 0.059 0.941 4 C -0.129 4.129 5 C -0.073 4.073 6 H 0.069 0.931 7 C -0.064 4.064 8 C -0.146 4.146 9 C -0.143 4.143 10 C -0.143 4.143 11 C -0.134 4.134 12 C 0.113 3.887 13 N -0.634 5.634 14 C 0.696 3.304 15 O -0.592 6.592 16 N -0.732 5.732 17 C 0.267 3.733 18 C -0.540 4.540 19 H 0.061 0.939 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.903 3.097 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.068 0.932 27 H 0.033 0.967 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.384 0.616 45 H 0.022 0.978 46 H 0.024 0.976 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.870 5.335 18.467 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.060 3.940 3 H 0.077 0.923 4 C -0.167 4.167 5 C -0.092 4.092 6 H 0.087 0.913 7 C -0.064 4.064 8 C -0.203 4.203 9 C -0.200 4.200 10 C -0.200 4.200 11 C -0.172 4.172 12 C -0.011 4.011 13 N -0.374 5.374 14 C 0.398 3.602 15 O -0.471 6.471 16 N -0.387 5.387 17 C 0.146 3.854 18 C -0.578 4.578 19 H 0.079 0.921 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.730 3.270 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.218 0.782 45 H 0.040 0.960 46 H 0.042 0.958 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.802 5.463 18.353 21.985 hybrid contribution 1.006 -0.690 -0.809 1.464 sum 11.808 4.773 17.544 21.679 Atomic orbital electron populations 1.22144 0.92648 1.04389 0.99813 1.20962 0.95748 0.94038 0.83242 0.92259 1.22207 0.95156 1.01735 0.97613 1.21130 0.95616 0.98818 0.93615 0.91295 1.20534 0.95302 0.95650 0.94902 1.21983 1.01013 0.95784 1.01513 1.21928 0.94821 1.01582 1.01689 1.21926 1.01620 0.99551 0.96918 1.22034 1.00953 0.99931 0.94265 1.21457 0.81568 0.99805 0.98239 1.47365 1.06002 1.62739 1.21329 1.16114 0.84749 0.79288 0.80071 1.90898 1.15836 1.62004 1.78387 1.45978 1.11362 1.54695 1.26621 1.18946 0.87963 0.93571 0.84949 1.21261 0.93822 1.33614 1.09124 0.92053 1.24939 0.94899 0.96277 0.97903 1.69990 1.06582 1.43685 1.32045 0.86381 0.79814 0.79595 0.81218 1.19680 1.20836 1.20818 0.91301 0.94869 0.90413 0.90988 0.91159 0.92263 0.93150 0.92301 0.92827 0.92998 0.92247 0.92262 0.93001 0.92835 0.90797 0.91034 0.90186 0.92117 0.78171 0.95957 0.95759 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 7.61 37.16 0.28 -1.84 16 2 C 0.16 2.29 3.49 -67.60 -0.24 2.05 16 3 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 4 C -0.13 -1.43 3.94 -26.61 -0.10 -1.54 16 5 C -0.07 -0.70 1.51 -90.58 -0.14 -0.84 16 6 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 7 C -0.06 -0.53 0.57 -154.51 -0.09 -0.62 16 8 C -0.15 -1.31 7.77 37.16 0.29 -1.02 16 9 C -0.14 -1.08 8.12 37.16 0.30 -0.78 16 10 C -0.14 -1.09 8.12 37.16 0.30 -0.79 16 11 C -0.13 -1.39 4.63 -26.84 -0.12 -1.51 16 12 C 0.11 1.42 6.40 -3.93 -0.03 1.40 16 13 N -0.63 -10.18 2.98 -171.17 -0.51 -10.69 16 14 C 0.70 14.73 8.10 -86.92 -0.70 14.02 16 15 O -0.59 -14.46 11.92 5.29 0.06 -14.39 16 16 N -0.73 -16.17 5.46 -66.42 -0.36 -16.53 16 17 C 0.27 7.25 5.43 -5.20 -0.03 7.23 16 18 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 19 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 22 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H 0.07 1.29 6.83 -51.92 -0.35 0.93 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 1.44 6.67 -51.93 -0.35 1.10 16 29 H 0.07 0.70 6.36 -51.93 -0.33 0.37 16 30 H 0.07 0.88 6.51 -51.93 -0.34 0.54 16 31 H 0.06 0.57 6.46 -51.93 -0.34 0.23 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.57 6.46 -51.93 -0.34 0.23 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.45 6.40 -51.93 -0.33 0.12 16 37 H 0.06 0.46 6.40 -51.93 -0.33 0.13 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.65 6.36 -51.93 -0.33 0.32 16 41 H 0.07 0.84 6.51 -51.93 -0.34 0.50 16 42 H 0.08 1.03 5.56 -51.93 -0.29 0.75 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.38 7.42 5.78 -40.82 -0.24 7.18 16 45 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -31.29 346.71 -8.64 -39.93 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -8.08 Total: 3.83 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.69 Total: 2.24 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.14 Total: -52.85 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.06 Total: -14.39 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.29 -8.64 -39.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336431810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.680 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds