Wall clock time and date at job start Tue Mar 31 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47290 * 2 1 4 4 C 1.50701 * 109.47125 * 240.00401 * 2 1 3 5 5 H 1.08002 * 120.00248 * 273.97558 * 4 2 1 6 6 C 1.37882 * 120.00135 * 93.97417 * 4 2 1 7 7 N 1.31515 * 119.99967 * 174.40356 * 6 4 2 8 8 Si 1.86793 * 119.99751 * 354.40749 * 6 4 2 9 9 H 1.48507 * 109.47201 * 93.98695 * 8 6 4 10 10 H 1.48502 * 109.47116 * 213.98463 * 8 6 4 11 11 H 1.48500 * 109.47195 * 333.98680 * 8 6 4 12 12 N 1.46502 * 109.47213 * 120.00615 * 2 1 3 13 13 C 1.46493 * 120.00057 * 60.00058 * 12 2 1 14 14 C 1.34771 * 119.99653 * 239.99729 * 12 2 1 15 15 O 1.21281 * 120.00119 * 0.02562 * 14 12 2 16 16 C 1.50702 * 119.99806 * 179.97438 * 14 12 2 17 17 C 1.53002 * 109.47373 * 180.02562 * 16 14 12 18 18 N 1.46897 * 109.47461 * 179.97438 * 17 16 14 19 19 C 1.46842 * 111.00213 * 287.10547 * 18 17 16 20 20 C 1.53038 * 109.52388 * 174.15967 * 19 18 17 21 21 C 1.53119 * 109.27755 * 59.17702 * 20 19 18 22 22 C 1.53117 * 109.16041 * 302.34651 * 21 20 19 23 23 C 1.46852 * 110.99411 * 162.85030 * 18 17 16 24 24 H 1.08998 * 109.42726 * 65.81308 * 23 18 17 25 25 C 1.52996 * 109.49719 * 305.84012 * 23 18 17 26 26 H 1.09004 * 109.47060 * 64.46746 * 1 2 3 27 27 H 1.09002 * 109.47109 * 184.46556 * 1 2 3 28 28 H 1.08994 * 109.47111 * 304.46191 * 1 2 3 29 29 H 0.96999 * 119.99978 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46831 * 270.00096 * 13 12 2 31 31 H 1.09001 * 109.47543 * 29.99526 * 13 12 2 32 32 H 1.09005 * 109.47419 * 150.00203 * 13 12 2 33 33 H 1.09000 * 109.46823 * 60.00275 * 16 14 12 34 34 H 1.09000 * 109.47494 * 300.00371 * 16 14 12 35 35 H 1.09001 * 109.47006 * 59.99694 * 17 16 14 36 36 H 1.09000 * 109.46970 * 300.00515 * 17 16 14 37 37 H 1.09002 * 109.46335 * 54.14266 * 19 18 17 38 38 H 1.09000 * 109.45108 * 294.17060 * 19 18 17 39 39 H 1.09005 * 109.50171 * 299.23401 * 20 19 18 40 40 H 1.09004 * 109.53250 * 179.14223 * 20 19 18 41 41 H 1.09005 * 109.52048 * 182.43908 * 21 20 19 42 42 H 1.08998 * 109.52214 * 62.25332 * 21 20 19 43 43 H 1.09004 * 109.50007 * 177.59852 * 22 21 20 44 44 H 1.08996 * 109.50226 * 297.67203 * 22 21 20 45 45 H 1.09002 * 109.47297 * 307.72537 * 25 23 18 46 46 H 1.09001 * 109.47207 * 67.72781 * 25 23 18 47 47 H 1.09001 * 109.47262 * 187.73278 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1512 -1.7838 -1.2237 6 6 2.3402 0.0102 -2.3651 7 7 2.8816 -0.5934 -3.4006 8 14 1.9882 1.8434 -2.4314 9 1 3.2032 2.5957 -2.0272 10 1 1.6075 2.2247 -3.8152 11 1 0.8743 2.1675 -1.5043 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4278 14 6 2.7932 -0.0358 2.0832 15 8 3.0858 1.1255 1.8916 16 6 3.2951 -0.7461 3.3139 17 6 4.1448 0.2156 4.1471 18 7 4.6335 -0.4767 5.3470 19 6 3.5484 -0.6820 6.3148 20 6 4.0580 -1.5302 7.4823 21 6 5.2350 -0.8145 8.1511 22 6 6.3311 -0.5696 7.1105 23 6 5.7563 0.2503 5.9532 24 1 5.4055 1.2117 6.3283 25 6 6.8435 0.4796 4.9014 26 1 -0.3633 0.4430 -0.9273 27 1 -0.3633 -1.0246 0.0800 28 1 -0.3633 0.5815 0.8473 29 1 3.0985 -0.0865 -4.1986 30 1 0.7376 -2.1445 1.9991 31 1 1.5295 -2.5969 0.4706 32 1 2.4629 -2.5821 1.9861 33 1 3.9005 -1.6027 3.0175 34 1 2.4472 -1.0884 3.9072 35 1 3.5391 1.0719 4.4434 36 1 4.9927 0.5582 3.5540 37 1 2.7195 -1.1955 5.8275 38 1 3.2080 0.2835 6.6888 39 1 4.3860 -2.5011 7.1108 40 1 3.2569 -1.6700 8.2082 41 1 5.6288 -1.4352 8.9560 42 1 4.8982 0.1394 8.5569 43 1 7.1540 -0.0224 7.5706 44 1 6.6954 -1.5253 6.7337 45 1 7.0967 -0.4689 4.4278 46 1 6.4781 1.1764 4.1470 47 1 7.7304 0.8947 5.3802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339276050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:44 Heat of formation + Delta-G solvation = -45.513196 kcal Electronic energy + Delta-G solvation = -23303.200320 eV Core-core repulsion = 20099.392604 eV Total energy + Delta-G solvation = -3203.807715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.70091 -38.85194 -35.49124 -34.19241 -32.81541 -32.57713 -30.86959 -29.39522 -27.14461 -26.15204 -25.24861 -24.77567 -22.58057 -21.43437 -20.38229 -19.76328 -18.16349 -17.23222 -16.39735 -15.91239 -15.44919 -15.20701 -15.04960 -14.55808 -14.32595 -14.11319 -13.87928 -13.29429 -13.01826 -12.64426 -12.53901 -12.38824 -12.23697 -12.06119 -12.01410 -11.98799 -11.92373 -11.40521 -11.35844 -11.16110 -11.11727 -11.01628 -10.80154 -10.64763 -10.39967 -10.35057 -10.20611 -9.77572 -9.23842 -8.95674 -8.62253 -8.33094 -7.62763 -6.15723 -4.16979 3.29923 3.37319 3.39655 3.44505 3.61993 4.09614 4.39707 4.60553 4.65369 4.72700 4.93522 5.15364 5.16165 5.22542 5.27235 5.28596 5.36297 5.42772 5.48123 5.58370 5.65365 5.70977 5.74071 5.76315 5.81269 5.87291 5.95085 5.99462 6.02298 6.09267 6.13859 6.25268 6.28320 6.28448 6.38510 6.43689 6.60043 6.95186 7.07503 7.09047 7.12733 7.52960 7.66551 8.17649 8.53236 8.85978 8.99697 9.47506 10.96324 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027009 B = 0.003796 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.444346 B = 7374.827639 C = 7795.389234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.224 3.776 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.078 0.922 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.873 3.127 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.589 5.589 13 C 0.083 3.917 14 C 0.505 3.495 15 O -0.562 6.562 16 C -0.131 4.131 17 C 0.065 3.935 18 N -0.535 5.535 19 C 0.053 3.947 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.111 4.111 23 C 0.083 3.917 24 H 0.037 0.963 25 C -0.152 4.152 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.024 0.976 29 H 0.266 0.734 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.030 0.970 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.747 -2.187 21.280 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.123 3.877 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.699 3.301 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.184 1.184 12 N -0.320 5.320 13 C -0.061 4.061 14 C 0.292 3.708 15 O -0.442 6.442 16 C -0.172 4.172 17 C -0.062 4.062 18 N -0.261 5.261 19 C -0.075 4.075 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.149 4.149 23 C -0.025 4.025 24 H 0.055 0.945 25 C -0.209 4.209 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.049 0.951 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.123 -2.019 20.818 21.148 hybrid contribution -0.532 1.543 -0.007 1.632 sum 2.592 -0.476 20.812 20.978 Atomic orbital electron populations 1.22261 0.98595 1.00186 0.99635 1.19227 0.90513 0.94911 0.83032 0.91925 1.21123 1.44693 0.95853 0.94777 0.90430 1.24939 0.93548 0.98362 0.95617 1.69906 1.41091 1.36747 1.05124 0.86924 0.79931 0.85957 0.77246 1.19929 1.21255 1.18443 1.48238 1.49143 1.11682 1.22893 1.21627 0.98913 0.83126 1.02442 1.20474 0.78906 0.87039 0.84403 1.90625 1.58709 1.17486 1.77344 1.21594 1.00536 1.00059 0.94963 1.21913 0.99291 0.94355 0.90659 1.61902 1.08224 1.49605 1.06330 1.22127 0.93818 0.98622 0.92971 1.21583 0.97695 0.99586 0.96543 1.21587 0.96231 1.00319 0.97807 1.21632 0.97440 1.00832 0.94963 1.21564 0.91642 0.94742 0.94560 0.94467 1.21962 0.97607 1.02618 0.98742 0.92421 0.93400 0.95684 0.92453 0.93989 0.90083 0.92265 0.88529 0.89863 0.94181 0.89271 0.90539 0.95139 0.91027 0.91792 0.91965 0.92485 0.91797 0.91000 0.91462 0.92020 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.92 37.16 0.33 -2.82 16 2 C 0.22 5.45 2.18 -69.08 -0.15 5.30 16 3 H 0.06 1.68 4.47 -51.93 -0.23 1.45 16 4 C -0.53 -14.55 8.72 -34.44 -0.30 -14.85 16 5 H 0.08 2.26 6.82 -52.49 -0.36 1.90 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -26.98 13.96 55.43 0.77 -26.21 16 8 Si 0.87 22.14 26.46 -169.99 -4.50 17.64 16 9 H -0.27 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 11 H -0.26 -6.32 6.09 56.52 0.34 -5.98 16 12 N -0.59 -12.32 2.75 -175.27 -0.48 -12.80 16 13 C 0.08 1.36 9.20 59.84 0.55 1.91 16 14 C 0.50 10.27 7.67 -10.99 -0.08 10.19 16 15 O -0.56 -13.56 15.31 5.56 0.09 -13.48 16 16 C -0.13 -1.96 4.32 -27.88 -0.12 -2.08 16 17 C 0.07 0.94 4.08 -3.82 -0.02 0.93 16 18 N -0.54 -6.41 4.44 -226.69 -1.01 -7.42 16 19 C 0.05 0.55 5.30 -3.84 -0.02 0.53 16 20 C -0.12 -1.00 6.09 -26.65 -0.16 -1.17 16 21 C -0.12 -0.99 6.00 -26.61 -0.16 -1.15 16 22 C -0.11 -0.99 5.37 -26.65 -0.14 -1.13 16 23 C 0.08 0.90 2.44 -67.72 -0.17 0.73 16 24 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 25 C -0.15 -1.64 8.57 37.16 0.32 -1.32 16 26 H 0.06 1.25 7.05 -51.93 -0.37 0.88 16 27 H 0.05 0.93 7.52 -51.93 -0.39 0.54 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.45 6.56 -51.93 -0.34 1.11 16 32 H 0.06 0.82 6.44 -51.93 -0.33 0.49 16 33 H 0.10 1.38 7.40 -51.93 -0.38 1.00 16 34 H 0.08 1.07 6.67 -51.93 -0.35 0.73 16 35 H 0.04 0.62 8.00 -51.93 -0.42 0.21 16 36 H 0.09 1.40 5.48 -51.93 -0.28 1.12 16 37 H 0.08 0.78 6.55 -51.93 -0.34 0.44 16 38 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 47 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 LS Contribution 352.98 15.07 5.32 5.32 Total: -1.00 -31.92 352.98 -8.42 -40.34 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -8.39 Total: -0.65 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -0.22 Total: -2.75 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.71 Total: -46.42 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.50 Total: 17.64 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.92 -8.42 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339276050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.170 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds