Wall clock time and date at job start Tue Mar 31 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47147 * 90.00197 * 8 6 4 10 10 H 1.48499 * 109.46797 * 209.99607 * 8 6 4 11 11 H 1.48500 * 109.47032 * 329.99738 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.46499 * 120.00271 * 300.00476 * 12 2 1 14 14 C 1.34783 * 119.99826 * 120.00322 * 12 2 1 15 15 O 1.21278 * 120.00109 * 359.97438 * 14 12 2 16 16 C 1.50703 * 120.00065 * 180.02562 * 14 12 2 17 17 C 1.52997 * 109.46952 * 179.97438 * 16 14 12 18 18 N 1.46905 * 109.46755 * 179.97438 * 17 16 14 19 19 C 1.46849 * 110.99645 * 66.05408 * 18 17 16 20 20 C 1.53035 * 109.52542 * 174.15531 * 19 18 17 21 21 C 1.53125 * 109.27533 * 59.17789 * 20 19 18 22 22 C 1.53117 * 109.16170 * 302.34522 * 21 20 19 23 23 C 1.46846 * 111.00563 * 301.84065 * 18 17 16 24 24 H 1.08997 * 109.46036 * 65.81841 * 23 18 17 25 25 C 1.53001 * 109.45844 * 305.85555 * 23 18 17 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 28 28 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 29 29 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47057 * 89.99771 * 13 12 2 31 31 H 1.09006 * 109.46711 * 209.99932 * 13 12 2 32 32 H 1.08998 * 109.46853 * 329.99725 * 13 12 2 33 33 H 1.08999 * 109.46819 * 299.99778 * 16 14 12 34 34 H 1.08998 * 109.47107 * 59.99963 * 16 14 12 35 35 H 1.08993 * 109.47397 * 300.00155 * 17 16 14 36 36 H 1.09006 * 109.46660 * 60.00266 * 17 16 14 37 37 H 1.09004 * 109.45810 * 294.17582 * 19 18 17 38 38 H 1.09002 * 109.46221 * 54.13667 * 19 18 17 39 39 H 1.08992 * 109.50450 * 179.11429 * 20 19 18 40 40 H 1.09002 * 109.50485 * 299.19939 * 20 19 18 41 41 H 1.09000 * 109.52587 * 62.24947 * 21 20 19 42 42 H 1.08996 * 109.51968 * 182.44269 * 21 20 19 43 43 H 1.08996 * 109.50767 * 177.59720 * 22 21 20 44 44 H 1.09001 * 109.50458 * 297.67697 * 22 21 20 45 45 H 1.08996 * 109.47244 * 59.99939 * 25 23 18 46 46 H 1.08999 * 109.46750 * 179.97438 * 25 23 18 47 47 H 1.08996 * 109.47094 * 299.99366 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4124 10 1 1.3431 -0.9492 5.1120 11 1 2.4857 -2.5663 3.7119 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0834 15 8 3.0859 1.1255 -1.8917 16 6 3.2950 -0.7460 -3.3141 17 6 4.1446 0.2158 -4.1472 18 7 4.6343 -0.4768 -5.3466 19 6 3.5242 -0.8273 -6.2418 20 6 4.0807 -1.4135 -7.5414 21 6 4.9134 -2.6574 -7.2190 22 6 6.0331 -2.2747 -6.2473 23 6 5.4200 -1.6636 -4.9853 24 1 4.7714 -2.3962 -4.5051 25 6 6.5364 -1.2610 -4.0196 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.7090 1.1614 3.4844 30 1 0.7374 -2.1443 -1.9993 31 1 2.4628 -2.5819 -1.9864 32 1 1.5294 -2.5969 -0.4708 33 1 3.9004 -1.6026 -3.0178 34 1 2.4470 -1.0881 -3.9073 35 1 3.5390 1.0722 -4.4435 36 1 4.9927 0.5582 -3.5541 37 1 2.8844 -1.5639 -5.7558 38 1 2.9426 0.0668 -6.4665 39 1 3.2562 -1.6880 -8.1992 40 1 4.7090 -0.6722 -8.0352 41 1 4.2761 -3.4137 -6.7606 42 1 5.3473 -3.0532 -8.1371 43 1 6.6034 -3.1645 -5.9806 44 1 6.6931 -1.5478 -6.7206 45 1 6.0998 -0.8266 -3.1203 46 1 7.1195 -2.1419 -3.7509 47 1 7.1850 -0.5280 -4.4992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339276052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:49 Heat of formation + Delta-G solvation = -46.207873 kcal Electronic energy + Delta-G solvation = -23525.269056 eV Core-core repulsion = 20321.431217 eV Total energy + Delta-G solvation = -3203.837839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.92327 -38.70057 -35.40555 -34.26577 -32.85632 -32.53571 -30.32252 -28.81299 -27.14671 -26.08424 -25.24311 -24.79524 -22.73768 -21.48031 -20.86002 -19.31095 -18.10806 -16.77793 -16.33805 -15.82315 -15.44645 -15.21159 -15.12872 -14.46710 -14.44831 -14.10611 -13.73799 -13.09762 -12.95719 -12.72525 -12.49604 -12.31808 -12.13960 -11.94964 -11.90507 -11.87163 -11.58643 -11.44667 -11.29228 -11.04867 -10.89666 -10.87317 -10.70316 -10.65089 -10.46578 -10.24249 -10.18953 -10.17241 -9.19432 -8.92420 -8.42711 -8.26440 -7.57886 -6.07734 -4.15840 3.26286 3.32493 3.33745 3.41587 3.79142 4.05244 4.39558 4.63084 4.68895 4.75006 4.96676 5.19181 5.21019 5.22360 5.24133 5.26166 5.30101 5.37628 5.50478 5.57855 5.66374 5.68438 5.76274 5.77038 5.83629 5.87155 5.96122 6.00250 6.05889 6.07119 6.15052 6.25799 6.34973 6.42184 6.75078 6.83355 7.06792 7.09681 7.13655 7.43152 7.54285 7.71744 8.01680 8.20275 8.54704 8.83144 9.07798 9.50763 10.97578 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027570 B = 0.003769 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.357014 B = 7427.580670 C = 7749.394875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.594 5.594 13 C 0.086 3.914 14 C 0.506 3.494 15 O -0.553 6.553 16 C -0.177 4.177 17 C 0.070 3.930 18 N -0.530 5.530 19 C 0.050 3.950 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.111 4.111 23 C 0.077 3.923 24 H 0.043 0.957 25 C -0.152 4.152 26 H 0.028 0.972 27 H 0.093 0.907 28 H 0.010 0.990 29 H 0.263 0.737 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.057 0.943 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.837 -8.117 -17.548 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.325 5.325 13 C -0.059 4.059 14 C 0.292 3.708 15 O -0.433 6.433 16 C -0.219 4.219 17 C -0.058 4.058 18 N -0.254 5.254 19 C -0.078 4.078 20 C -0.154 4.154 21 C -0.160 4.160 22 C -0.149 4.149 23 C -0.031 4.031 24 H 0.061 0.939 25 C -0.209 4.209 26 H 0.047 0.953 27 H 0.111 0.889 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.202 -7.071 -17.542 19.904 hybrid contribution -0.402 -1.253 1.386 1.911 sum 5.800 -8.324 -16.156 19.078 Atomic orbital electron populations 1.22075 0.98274 0.99308 1.00741 1.18926 0.90832 0.94553 0.80024 0.91913 1.21317 1.31801 1.12998 0.90361 0.92332 1.24899 0.94929 0.94995 0.98963 1.69887 1.36313 1.22612 1.23741 0.86497 0.78677 0.79832 0.82388 1.20581 1.21104 1.19953 1.48260 1.49070 1.11541 1.23663 1.21564 0.98562 0.83493 1.02242 1.20300 0.79165 0.87116 0.84202 1.90646 1.58496 1.17138 1.76996 1.22368 1.01480 1.01165 0.96858 1.22028 0.98814 0.95730 0.89275 1.62269 1.22492 1.24851 1.15769 1.22119 0.92529 0.99761 0.93347 1.21581 0.99546 0.97444 0.96825 1.21588 0.97555 0.97592 0.99226 1.21631 0.97752 1.00167 0.95339 1.21641 0.94947 0.91253 0.95293 0.93928 1.21942 0.98152 1.01633 0.99189 0.95252 0.88861 0.97101 0.92682 0.94065 0.93083 0.90139 0.89466 0.89862 0.90027 0.89350 0.94720 0.90687 0.91800 0.91192 0.92357 0.92018 0.91791 0.91164 0.91847 0.92385 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.97 37.16 0.33 -3.20 16 2 C 0.26 6.64 2.64 -69.08 -0.18 6.46 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.31 7.99 -34.44 -0.28 -14.58 16 5 H 0.06 1.56 7.33 -52.49 -0.38 1.18 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.27 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.59 -12.78 2.75 -175.26 -0.48 -13.26 16 13 C 0.09 1.45 9.24 59.85 0.55 2.01 16 14 C 0.51 10.45 7.67 -10.98 -0.08 10.37 16 15 O -0.55 -13.62 15.31 5.56 0.09 -13.53 16 16 C -0.18 -2.64 3.45 -27.88 -0.10 -2.74 16 17 C 0.07 0.99 4.08 -3.82 -0.02 0.98 16 18 N -0.53 -6.33 4.69 -226.69 -1.06 -7.39 16 19 C 0.05 0.53 5.05 -3.83 -0.02 0.51 16 20 C -0.12 -1.01 6.09 -26.65 -0.16 -1.18 16 21 C -0.12 -1.01 6.00 -26.61 -0.16 -1.17 16 22 C -0.11 -1.00 5.37 -26.65 -0.14 -1.15 16 23 C 0.08 0.83 1.84 -67.72 -0.12 0.71 16 24 H 0.04 0.48 6.61 -51.93 -0.34 0.14 16 25 C -0.15 -1.66 8.68 37.16 0.32 -1.34 16 26 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 27 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.71 6.44 -51.93 -0.33 0.38 16 32 H 0.08 1.46 7.02 -51.93 -0.36 1.09 16 33 H 0.09 1.21 5.49 -51.93 -0.29 0.93 16 34 H 0.08 1.12 6.65 -51.93 -0.35 0.78 16 35 H 0.08 1.25 8.02 -51.93 -0.42 0.83 16 36 H 0.09 1.38 6.28 -51.93 -0.33 1.05 16 37 H 0.03 0.37 6.76 -51.93 -0.35 0.02 16 38 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.80 6.07 -51.93 -0.32 0.49 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -30.32 352.41 -9.01 -39.33 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -8.32 Total: 0.78 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -0.15 Total: -2.65 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.92 Total: -45.30 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.32 -9.01 -39.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339276052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.876 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds