Wall clock time and date at job start Tue Mar 31 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47106 * 2 1 4 4 C 1.50693 * 109.47164 * 120.00032 * 2 1 3 5 5 H 1.07997 * 120.00187 * 87.20816 * 4 2 1 6 6 C 1.37881 * 120.00350 * 267.20407 * 4 2 1 7 7 N 1.31510 * 120.00210 * 176.79476 * 6 4 2 8 8 Si 1.86800 * 119.99706 * 356.79768 * 6 4 2 9 9 H 1.48498 * 109.47245 * 269.79734 * 8 6 4 10 10 H 1.48500 * 109.47243 * 29.79420 * 8 6 4 11 11 H 1.48502 * 109.47187 * 149.79642 * 8 6 4 12 12 N 1.46502 * 109.46938 * 240.00008 * 2 1 3 13 13 C 1.46494 * 120.00018 * 300.00210 * 12 2 1 14 14 C 1.34779 * 119.99869 * 119.99681 * 12 2 1 15 15 O 1.21286 * 120.00139 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99846 * 179.97438 * 14 12 2 17 17 C 1.53002 * 109.47010 * 180.02562 * 16 14 12 18 18 N 1.46904 * 109.47268 * 179.97438 * 17 16 14 19 19 C 1.46853 * 110.99462 * 45.79221 * 18 17 16 20 20 C 1.53032 * 109.51897 * 185.83662 * 19 18 17 21 21 C 1.53116 * 109.28046 * 300.82285 * 20 19 18 22 22 C 1.53109 * 109.16284 * 57.65593 * 21 20 19 23 23 C 1.46838 * 110.99815 * 169.99900 * 18 17 16 24 24 H 1.08999 * 109.46789 * 294.16883 * 23 18 17 25 25 C 1.53001 * 109.46379 * 54.15216 * 23 18 17 26 26 H 1.08995 * 109.47247 * 179.81601 * 1 2 3 27 27 H 1.09005 * 109.46630 * 299.81833 * 1 2 3 28 28 H 1.09003 * 109.47263 * 59.81731 * 1 2 3 29 29 H 0.96999 * 119.99714 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.47432 * 90.00094 * 13 12 2 31 31 H 1.09000 * 109.47126 * 209.99953 * 13 12 2 32 32 H 1.08997 * 109.47457 * 329.99670 * 13 12 2 33 33 H 1.08998 * 109.47148 * 300.00203 * 16 14 12 34 34 H 1.08998 * 109.47068 * 60.00781 * 16 14 12 35 35 H 1.08999 * 109.47588 * 300.00304 * 17 16 14 36 36 H 1.09007 * 109.47036 * 60.00290 * 17 16 14 37 37 H 1.09002 * 109.46167 * 305.85378 * 19 18 17 38 38 H 1.08999 * 109.46064 * 65.82374 * 19 18 17 39 39 H 1.09000 * 109.50506 * 180.87804 * 20 19 18 40 40 H 1.09003 * 109.53383 * 60.78816 * 20 19 18 41 41 H 1.09000 * 109.52309 * 297.74317 * 21 20 19 42 42 H 1.09008 * 109.52110 * 177.56155 * 21 20 19 43 43 H 1.09001 * 109.50493 * 182.40388 * 22 21 20 44 44 H 1.09005 * 109.53765 * 62.30626 * 22 21 20 45 45 H 1.09005 * 109.47102 * 59.99253 * 25 23 18 46 46 H 1.09003 * 109.47358 * 179.97438 * 25 23 18 47 47 H 1.09001 * 109.47153 * 299.99603 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.1694 -1.7815 1.2174 6 6 2.3171 0.0071 2.3729 7 7 2.6950 -0.6192 3.4657 8 14 2.1659 1.8690 2.3683 9 1 3.4644 2.4701 1.9710 10 1 1.1150 2.2780 1.4021 11 1 1.7982 2.3391 3.7281 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0931 -1.4280 14 6 2.7931 -0.0356 -2.0834 15 8 3.0865 1.1255 -1.8913 16 6 3.2959 -0.7462 -3.3136 17 6 4.1462 0.2154 -4.1462 18 7 4.6368 -0.4774 -5.3451 19 6 3.5597 -1.2389 -5.9906 20 6 4.1358 -2.0604 -7.1461 21 6 4.7964 -1.1182 -8.1562 22 6 5.8813 -0.3026 -7.4477 23 6 5.2547 0.4681 -6.2834 24 1 4.4945 1.1491 -6.6662 25 6 6.3391 1.2692 -5.5600 26 1 -0.3633 -1.0276 -0.0033 27 1 -0.3633 0.5110 0.8917 28 1 -0.3634 0.5167 -0.8884 29 1 2.8949 -0.1144 4.2695 30 1 0.7374 -2.1443 -1.9994 31 1 2.4628 -2.5818 -1.9864 32 1 1.5294 -2.5969 -0.4709 33 1 3.9016 -1.6023 -3.0166 34 1 2.4483 -1.0890 -3.9070 35 1 3.5409 1.0718 -4.4432 36 1 4.9939 0.5579 -3.5526 37 1 3.1012 -1.9079 -5.2624 38 1 2.8076 -0.5497 -6.3746 39 1 3.3337 -2.6134 -7.6348 40 1 4.8780 -2.7599 -6.7614 41 1 4.0464 -0.4446 -8.5706 42 1 5.2460 -1.7024 -8.9593 43 1 6.3263 0.4004 -8.1519 44 1 6.6518 -0.9734 -7.0674 45 1 7.0991 0.5882 -5.1768 46 1 6.7981 1.9708 -6.2565 47 1 5.8928 1.8189 -4.7313 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339276053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:52 Heat of formation + Delta-G solvation = -44.046548 kcal Electronic energy + Delta-G solvation = -23342.779620 eV Core-core repulsion = 20139.035503 eV Total energy + Delta-G solvation = -3203.744117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.79396 -38.85167 -35.51362 -34.24899 -32.90152 -32.59617 -30.80264 -29.30278 -27.15033 -26.17514 -25.28661 -24.96472 -22.53590 -21.47256 -20.39962 -19.69709 -18.19409 -17.29313 -16.46253 -15.83078 -15.44462 -15.32868 -15.09785 -14.53278 -14.25722 -14.18949 -13.81870 -13.33861 -13.07138 -12.69016 -12.50726 -12.36681 -12.26486 -12.10162 -12.01482 -11.96791 -11.96076 -11.40600 -11.36977 -11.20310 -11.07947 -11.03381 -10.80090 -10.69693 -10.44766 -10.32911 -10.28131 -9.76584 -9.27661 -8.97186 -8.60827 -8.31088 -7.65821 -6.16159 -4.18172 3.30041 3.33886 3.39117 3.45481 3.62763 4.05037 4.39025 4.60352 4.64655 4.72186 4.95076 5.09943 5.13405 5.21003 5.23965 5.26377 5.33123 5.39275 5.46553 5.55834 5.62890 5.68969 5.73740 5.75959 5.78726 5.84257 5.94746 5.96772 6.02546 6.08157 6.11932 6.22321 6.26795 6.28285 6.36470 6.41635 6.59592 6.93821 7.05456 7.08193 7.11872 7.49008 7.65147 8.15982 8.51437 8.84776 8.96593 9.46520 10.95836 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027168 B = 0.003840 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.373870 B = 7289.665963 C = 7801.447271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.222 3.778 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.078 0.922 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.262 1.262 11 H -0.287 1.287 12 N -0.589 5.589 13 C 0.082 3.918 14 C 0.505 3.495 15 O -0.560 6.560 16 C -0.142 4.142 17 C 0.072 3.928 18 N -0.534 5.534 19 C 0.046 3.954 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.111 4.111 23 C 0.083 3.917 24 H 0.038 0.962 25 C -0.151 4.151 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.024 0.976 29 H 0.266 0.734 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.039 0.961 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.030 0.970 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.343 -2.312 -21.570 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.121 3.879 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.701 3.299 9 H -0.198 1.198 10 H -0.186 1.186 11 H -0.213 1.213 12 N -0.320 5.320 13 C -0.061 4.061 14 C 0.292 3.708 15 O -0.440 6.440 16 C -0.182 4.182 17 C -0.055 4.055 18 N -0.260 5.260 19 C -0.082 4.082 20 C -0.154 4.154 21 C -0.160 4.160 22 C -0.149 4.149 23 C -0.025 4.025 24 H 0.056 0.944 25 C -0.208 4.208 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.893 -2.017 -21.096 21.389 hybrid contribution -0.735 1.340 -0.040 1.529 sum 2.158 -0.677 -21.136 21.257 Atomic orbital electron populations 1.22225 0.98484 1.00488 0.99311 1.19303 0.90661 0.95002 0.82891 0.91813 1.21126 1.44954 0.96069 0.94209 0.90394 1.24943 0.93762 0.98457 0.95309 1.69888 1.45291 1.36083 1.01704 0.86894 0.79753 0.86137 0.77097 1.19797 1.18649 1.21321 1.48252 1.49144 1.11675 1.22913 1.21633 0.98858 0.83133 1.02520 1.20426 0.78996 0.87053 0.84338 1.90631 1.58640 1.17464 1.77233 1.21817 1.00637 1.00284 0.95453 1.21861 0.98662 0.94587 0.90431 1.62052 1.30662 1.26718 1.06567 1.22230 0.92555 0.96959 0.96433 1.21588 1.00342 0.97969 0.95539 1.21588 0.98197 0.98332 0.97846 1.21632 0.98192 0.98929 0.96113 1.21598 0.96085 0.92442 0.92407 0.94440 1.21923 0.98666 0.99645 1.00588 0.93297 0.92561 0.95668 0.92417 0.93962 0.92364 0.89996 0.88398 0.89476 0.94232 0.89475 0.89937 0.95146 0.91753 0.91037 0.92482 0.91972 0.91809 0.91018 0.91695 0.92451 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.13 37.16 0.34 -2.78 16 2 C 0.22 5.39 2.20 -69.08 -0.15 5.24 16 3 H 0.06 1.71 4.15 -51.93 -0.22 1.49 16 4 C -0.53 -14.49 8.72 -34.44 -0.30 -14.79 16 5 H 0.08 2.26 6.83 -52.49 -0.36 1.91 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 8 Si 0.87 22.28 26.75 -169.99 -4.55 17.73 16 9 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.26 -6.45 6.53 56.52 0.37 -6.09 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 N -0.59 -12.21 2.75 -175.27 -0.48 -12.70 16 13 C 0.08 1.33 9.28 59.84 0.56 1.89 16 14 C 0.51 10.19 7.67 -10.98 -0.08 10.11 16 15 O -0.56 -13.45 15.31 5.55 0.09 -13.37 16 16 C -0.14 -2.08 3.50 -27.88 -0.10 -2.18 16 17 C 0.07 1.04 3.65 -3.82 -0.01 1.02 16 18 N -0.53 -6.42 4.64 -226.68 -1.05 -7.47 16 19 C 0.05 0.48 4.85 -3.83 -0.02 0.46 16 20 C -0.12 -1.01 6.09 -26.65 -0.16 -1.17 16 21 C -0.12 -1.00 6.00 -26.61 -0.16 -1.16 16 22 C -0.11 -0.99 5.37 -26.65 -0.14 -1.13 16 23 C 0.08 0.89 2.40 -67.72 -0.16 0.73 16 24 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 25 C -0.15 -1.60 8.78 37.16 0.33 -1.27 16 26 H 0.05 0.96 7.66 -51.93 -0.40 0.56 16 27 H 0.06 1.22 7.67 -51.93 -0.40 0.82 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 32 H 0.08 1.45 6.57 -51.93 -0.34 1.11 16 33 H 0.10 1.36 7.40 -51.93 -0.38 0.97 16 34 H 0.09 1.09 6.17 -51.93 -0.32 0.77 16 35 H 0.04 0.61 8.04 -51.93 -0.42 0.19 16 36 H 0.09 1.38 6.80 -51.93 -0.35 1.03 16 37 H 0.08 0.83 5.81 -51.93 -0.30 0.52 16 38 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.75 6.55 -51.93 -0.34 0.41 16 LS Contribution 353.38 15.07 5.33 5.33 Total: -1.00 -31.91 353.38 -8.47 -40.39 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -8.40 Total: -0.91 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -0.17 Total: -2.85 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.76 Total: -46.31 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.55 Total: 17.73 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.91 -8.47 -40.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339276053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.661 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds