Wall clock time and date at job start Tue Mar 31 2020 06:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.53005 * 109.46864 * 240.00024 * 2 1 3 5 5 C 1.52997 * 109.47452 * 299.99825 * 4 2 1 6 6 C 1.53002 * 109.46817 * 300.00239 * 5 4 2 7 7 C 1.53000 * 109.47233 * 60.00194 * 6 5 4 8 8 C 1.52997 * 109.47060 * 299.99657 * 7 6 5 9 9 H 1.09002 * 109.47153 * 300.00319 * 8 7 6 10 10 C 1.52992 * 109.47482 * 180.02562 * 8 7 6 11 11 C 1.53001 * 109.47279 * 65.00040 * 10 8 7 12 12 N 1.46497 * 109.47669 * 180.02562 * 11 10 8 13 13 C 1.34776 * 120.00452 * 180.02562 * 12 11 10 14 14 O 1.21593 * 119.99462 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00544 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00113 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.46904 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.47229 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99616 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99838 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00207 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99540 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47496 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47253 * 119.99755 * 22 20 18 25 25 H 1.48501 * 109.46994 * 239.99818 * 22 20 18 26 26 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47261 * 299.99608 * 1 2 3 28 28 H 1.09001 * 109.47377 * 60.00149 * 1 2 3 29 29 H 1.09002 * 109.46935 * 179.97438 * 4 2 1 30 30 H 1.09001 * 109.46812 * 60.00041 * 4 2 1 31 31 H 1.08993 * 109.47194 * 179.97438 * 5 4 2 32 32 H 1.09002 * 109.46695 * 59.99734 * 5 4 2 33 33 H 1.08992 * 109.47063 * 299.99823 * 6 5 4 34 34 H 1.09004 * 109.46733 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47398 * 59.99826 * 7 6 5 36 36 H 1.09001 * 109.47194 * 180.02562 * 7 6 5 37 37 H 1.08996 * 109.47729 * 184.99759 * 10 8 7 38 38 H 1.09001 * 109.47563 * 305.00337 * 10 8 7 39 39 H 1.09001 * 109.46924 * 300.00271 * 11 10 8 40 40 H 1.09000 * 109.47104 * 59.99686 * 11 10 8 41 41 H 0.97003 * 119.99611 * 359.97438 * 12 11 10 42 42 H 0.96997 * 119.99179 * 0.02562 * 15 13 12 43 43 H 1.08994 * 109.47172 * 300.00359 * 16 15 13 44 44 H 1.09001 * 109.46715 * 60.00878 * 16 15 13 45 45 H 1.09000 * 109.47062 * 300.00390 * 17 16 15 46 46 H 1.09000 * 109.47165 * 60.00076 * 17 16 15 47 47 H 0.96998 * 119.99502 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5301 -2.1638 -1.2493 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2492 8 6 2.0400 -0.7213 1.2492 9 1 3.1300 -0.7213 1.2492 10 6 1.5306 -0.0002 2.4987 11 6 2.1412 -0.6454 3.7445 12 7 1.6529 0.0446 4.9410 13 6 2.0603 -0.3540 6.1623 14 8 2.8328 -1.2867 6.2710 15 7 1.6115 0.2811 7.2631 16 6 2.0540 -0.1526 8.5906 17 6 1.4013 0.7275 9.6584 18 6 1.8569 0.2818 11.0240 19 1 2.5430 -0.5467 11.1206 20 6 1.3970 0.9310 12.1501 21 7 0.5612 1.9395 12.0325 22 14 1.9612 0.3780 13.8428 23 1 2.8946 -0.7686 13.7034 24 1 2.6550 1.5002 14.5245 25 1 0.7832 -0.0368 14.6462 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.1300 -0.7209 -1.2495 30 1 1.6766 -0.2074 -2.1392 31 1 1.8930 -2.6774 -2.1395 32 1 0.4401 -2.1637 -1.2493 33 1 3.1301 -2.8849 -0.0001 34 1 1.6764 -3.9125 0.0001 35 1 0.4401 -2.1638 1.2492 36 1 1.8938 -2.6773 2.1392 37 1 1.8189 1.0500 2.4552 38 1 0.4443 -0.0772 2.5452 39 1 1.8528 -1.6956 3.7881 40 1 3.2275 -0.5685 3.6981 41 1 1.0370 0.7890 4.8542 42 1 0.9950 1.0249 7.1762 43 1 1.7636 -1.1912 8.7490 44 1 3.1382 -0.0639 8.6591 45 1 1.6913 1.7662 9.5001 46 1 0.3171 0.6385 9.5897 47 1 0.2380 2.3964 12.8247 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343747597.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:24 Heat of formation + Delta-G solvation = -80.085372 kcal Electronic energy + Delta-G solvation = -21911.185751 eV Core-core repulsion = 18705.878873 eV Total energy + Delta-G solvation = -3205.306877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.00898 -39.31750 -35.59178 -34.57492 -32.97200 -32.61298 -32.06192 -29.68589 -28.34338 -26.68264 -24.76523 -23.63448 -22.39014 -21.14366 -20.99295 -20.44572 -18.72866 -17.86366 -16.46311 -16.20961 -15.75213 -15.60577 -15.01758 -14.58191 -14.52634 -14.43927 -13.92116 -13.84369 -13.49300 -13.27948 -13.02840 -12.95400 -12.39527 -12.25334 -11.93881 -11.84426 -11.83576 -11.44550 -11.36100 -11.15134 -11.03308 -10.87463 -10.59604 -10.50105 -10.30374 -10.28072 -10.15711 -9.87497 -9.52466 -9.21862 -8.93412 -8.46150 -8.19404 -6.07444 -4.09739 3.11813 3.29927 3.37501 3.43292 3.66055 4.31257 4.33309 4.37719 4.43094 4.73814 4.75020 4.83179 4.96672 5.03715 5.07265 5.11015 5.17885 5.24861 5.29756 5.34879 5.40788 5.50983 5.53786 5.66114 5.69487 5.72172 5.81700 5.84555 5.91717 5.98964 5.99659 6.03985 6.15162 6.27460 6.34590 6.43670 6.68953 6.81647 7.05397 7.30139 7.60282 7.66239 7.92299 8.28912 8.49566 8.95785 9.06147 9.54912 11.04315 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.050066 B = 0.002201 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.132110 B =12721.275305 C =13048.234612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 H 0.068 0.932 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.120 4.120 7 C -0.121 4.121 8 C -0.077 4.077 9 H 0.073 0.927 10 C -0.128 4.128 11 C 0.139 3.861 12 N -0.755 5.755 13 C 0.697 3.303 14 O -0.600 6.600 15 N -0.740 5.740 16 C 0.140 3.860 17 C 0.012 3.988 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.393 0.607 42 H 0.393 0.607 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.851 -3.184 -28.190 28.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.087 0.913 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.159 4.159 8 C -0.096 4.096 9 H 0.091 0.909 10 C -0.166 4.166 11 C 0.014 3.986 12 N -0.411 5.411 13 C 0.397 3.603 14 O -0.479 6.479 15 N -0.393 5.393 16 C 0.017 3.983 17 C -0.025 4.025 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.226 0.774 42 H 0.226 0.774 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.211 -3.948 -27.949 28.227 hybrid contribution -0.358 0.560 0.893 1.113 sum -0.569 -3.388 -27.056 27.273 Atomic orbital electron populations 1.21997 0.95346 1.02165 1.01535 1.21105 0.95998 0.98984 0.94319 0.91308 1.21559 1.00539 0.95697 0.97396 1.21575 1.00976 0.95621 0.97735 1.21526 1.00801 0.98788 0.94591 1.21717 1.01082 0.95045 0.98016 1.21073 1.00411 0.94820 0.93293 0.90889 1.21899 1.01225 1.00004 0.93447 1.21178 0.98650 0.96375 0.82364 1.45153 1.52537 1.38549 1.04901 1.16089 0.81129 0.82642 0.80471 1.90884 1.39630 1.31328 1.86022 1.45532 1.50753 1.36937 1.06098 1.21576 0.98834 0.99127 0.78738 1.19332 0.96243 0.94845 0.92094 1.21102 1.27685 1.16483 0.90509 0.92155 1.25004 0.94986 0.94931 0.99489 1.69967 1.32258 1.21688 1.29471 0.86453 0.78558 0.78683 0.83848 1.19562 1.20967 1.20961 0.92009 0.92426 0.93086 0.92057 0.92201 0.92415 0.91761 0.92046 0.92157 0.91580 0.91441 0.91314 0.91010 0.91740 0.92097 0.77387 0.77445 0.92838 0.92830 0.95980 0.95978 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.15 37.16 0.30 -0.64 16 2 C -0.09 -0.55 2.72 -90.61 -0.25 -0.79 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.11 -0.70 5.45 -26.73 -0.15 -0.84 16 5 C -0.12 -0.75 5.65 -26.73 -0.15 -0.90 16 6 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 7 C -0.12 -0.91 4.69 -26.73 -0.13 -1.03 16 8 C -0.08 -0.55 1.96 -90.63 -0.18 -0.73 16 9 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 10 C -0.13 -1.00 4.29 -26.73 -0.11 -1.12 16 11 C 0.14 1.57 5.43 -4.04 -0.02 1.55 16 12 N -0.75 -9.86 5.56 -65.23 -0.36 -10.22 16 13 C 0.70 12.67 8.57 -86.92 -0.74 11.93 16 14 O -0.60 -13.40 16.34 5.28 0.09 -13.32 16 15 N -0.74 -13.51 5.56 -65.23 -0.36 -13.87 16 16 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 17 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 18 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 19 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 22 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H 0.06 0.39 4.81 -51.93 -0.25 0.14 16 27 H 0.06 0.36 6.55 -51.93 -0.34 0.02 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 36 H 0.07 0.58 6.56 -51.93 -0.34 0.23 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.53 6.71 -51.93 -0.35 0.19 16 39 H 0.06 0.80 6.56 -51.93 -0.34 0.45 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.39 3.99 8.49 -40.82 -0.35 3.64 16 42 H 0.39 6.13 8.49 -40.82 -0.35 5.78 16 43 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 360.77 15.07 5.44 5.44 Total: -1.00 -32.35 360.77 -10.09 -42.43 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.44 Total: 2.27 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -2.16 Total: -3.69 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.01 Total: -49.69 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.35 -10.09 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343747597.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.652 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds